Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 2.1e-124 449.1 238 100.0
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 1.9e-37 160.2 257 40.5
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 6.8e-35 151.8 227 42.7
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 1.1e-32 144.4 213 42.7
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.9e-32 143.7 256 39.1
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 3.5e-31 139.4 221 41.6
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 3.0e-30 136.3 221 40.7
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 3.9e-30 136.0 234 39.3
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 8.7e-30 134.8 213 40.8
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 3.3e-29 132.9 228 38.2
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 5.6e-29 132.1 218 40.4
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 7.3e-29 131.7 213 39.4
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 2.1e-28 130.2 202 41.1
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.4e-27 127.5 202 41.6
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 1.4e-27 127.5 222 37.8
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 2.4e-27 126.7 216 40.3
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 3.1e-27 126.3 225 37.3
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 4.0e-27 125.9 227 39.2
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 9.0e-27 124.8 222 40.5
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 1.5e-26 124.0 225 36.9
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 2.6e-26 123.2 208 40.4
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 3.4e-26 122.9 200 40.5
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 4.4e-26 122.5 203 39.4
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 7.6e-26 121.7 207 37.7
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 7.6e-26 121.7 227 37.9
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 2.9e-25 119.8 223 36.8
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.1e-24 117.9 231 36.8
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.9e-24 117.1 230 36.1
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 3.2e-24 116.3 242 36.0
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 7.1e-24 115.2 243 35.4
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 7.1e-24 115.2 214 37.9
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 1.2e-23 114.4 206 35.9
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 1.2e-23 114.4 251 35.9
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 1.6e-23 114.0 218 36.7
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 2.7e-23 113.2 199 37.7
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 4.6e-23 112.5 216 37.0
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.6e-23 112.5 257 34.2
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 6.0e-23 112.1 241 36.1
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 7.8e-23 111.7 198 38.4
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 7.8e-23 111.7 156 43.6
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 7.8e-23 111.7 221 38.0
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 1.3e-22 110.9 215 38.1
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.7e-22 110.5 219 36.1
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 1.7e-22 110.5 219 37.0
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 1.7e-22 110.5 255 34.9
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.3e-22 110.2 222 36.5
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.9e-22 109.4 230 33.9
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.9e-22 109.4 184 40.8
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 6.6e-22 108.6 194 38.7
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 6.6e-22 108.6 222 36.5
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 8.7e-22 108.2 198 37.9
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 1.5e-21 107.5 217 36.4
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 1.9e-21 107.1 214 36.9
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.9e-21 107.1 216 36.1
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.3e-21 105.9 216 36.1
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 5.6e-21 105.5 205 36.1
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 7.3e-21 105.1 190 38.4
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 2.8e-20 103.2 211 34.6
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 3.6e-20 102.8 210 38.1
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 6.2e-20 102.1 242 33.5
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 6.2e-20 102.1 197 36.5
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 8.1e-20 101.7 156 41.0
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 2.4e-19 100.1 258 32.6
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 3.1e-19 99.8 205 35.1
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 4.0e-19 99.4 253 35.6
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 5.3e-19 99.0 211 34.6
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 5.3e-19 99.0 203 35.5
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 6.9e-19 98.6 227 33.5
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 1.5e-18 97.4 262 32.8
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 2.0e-18 97.1 202 33.2
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 2.0e-18 97.1 182 35.2
Oeu049982.1 Olea europaea HOM05D003792 ORTHO05D003195 4.5e-18 95.9 171 38.0
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 5.8e-18 95.5 179 36.9
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.9e-17 93.2 231 32.9
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 3.8e-17 92.8 203 34.5
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 1.1e-16 91.3 179 37.4
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.4e-16 90.9 187 36.9
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 1.4e-16 90.9 170 34.1
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.9e-16 90.5 207 32.9
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 1.9e-16 90.5 171 34.5
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 2.4e-16 90.1 242 30.6
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 4.2e-16 89.4 208 30.8
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 4.2e-16 89.4 208 30.8
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 4.2e-16 89.4 184 34.8
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 4.2e-16 89.4 234 33.8
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 4.2e-16 89.4 187 36.9
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 7.1e-16 88.6 229 30.6
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 7.1e-16 88.6 174 36.8
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 1.2e-15 87.8 216 35.6
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 2.1e-15 87.0 233 31.3
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 2.7e-15 86.7 230 30.4
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 2.7e-15 86.7 230 30.4
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 2.7e-15 86.7 189 34.4
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 2.7e-15 86.7 165 34.5
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 3.5e-15 86.3 223 31.4
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 3.5e-15 86.3 168 33.9
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 4.6e-15 85.9 119 40.3
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 7.9e-15 85.1 209 34.9
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 7.9e-15 85.1 187 34.2
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 1.3e-14 84.3 228 31.1
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 5.1e-14 82.4 207 31.9
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.1e-14 82.4 154 39.0
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 6.7e-14 82.0 110 40.9
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 6.7e-14 82.0 240 29.6
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 8.7e-14 81.6 206 32.5
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 8.7e-14 81.6 190 34.7
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 8.7e-14 81.6 297 30.3
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 1.1e-13 81.3 219 32.9
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.5e-13 80.9 208 31.2
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.9e-13 80.5 239 29.7
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.9e-13 80.5 239 29.7
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 2.5e-13 80.1 227 29.5
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.5e-13 80.1 208 31.2
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 3.3e-13 79.7 231 30.3
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 3.3e-13 79.7 225 28.9
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 4.3e-13 79.3 249 28.9
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 5.6e-13 79.0 206 32.0
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 5.6e-13 79.0 241 30.7
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 7.4e-13 78.6 227 30.8
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 9.6e-13 78.2 229 31.0
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.3e-12 77.8 208 30.8
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 1.6e-12 77.4 210 31.9
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.1e-12 77.0 204 35.3
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 2.8e-12 76.6 117 41.0
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 8.1e-12 75.1 215 28.8
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.8e-11 73.9 220 28.6
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 1.8e-11 73.9 100 44.0
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 3.1e-11 73.2 184 32.6
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 3.1e-11 73.2 232 30.2
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 4.0e-11 72.8 125 37.6
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 4.0e-11 72.8 206 32.5
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 5.3e-11 72.4 222 31.1
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 5.3e-11 72.4 123 36.6
vmacro04447 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 5.3e-11 72.4 203 31.5
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 1.2e-10 71.2 235 28.1
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 1.5e-10 70.9 236 29.7
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 2.6e-10 70.1 201 32.3
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 7.6e-10 68.6 186 32.3
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 1.0e-09 68.2 227 30.0
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 1.0e-09 68.2 203 31.5
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 1.7e-09 67.4 219 28.8
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 2.9e-09 66.6 281 27.4
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 4.9e-09 65.9 217 28.6
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 4.9e-09 65.9 217 28.6
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 8.4e-09 65.1 231 28.6
Gohir.A01G007200 Gossypium hirsutum HOM05D003792 ORTHO05D003195 8.4e-09 65.1 207 31.9
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 1.9e-08 63.9 102 39.2
Gorai.002G008300 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.9e-08 63.9 204 30.4
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 2.5e-08 63.5 174 31.0
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 3.2e-08 63.2 217 30.4
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 4.2e-08 62.8 213 27.2
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 5.5e-08 62.4 139 34.5
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 1.2e-07 61.2 245 29.0
Duzib052G0481 Durio zibethinus HOM05D003792 ORTHO05D003195 1.6e-07 60.8 196 28.6
Aqoxy5G01231 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 2.1e-07 60.5 195 30.8
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 2.7e-07 60.1 205 26.8
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 3.5e-07 59.7 241 30.7
SEGI_08793 Sequoiadendron giganteum HOM05D019663 ORTHO05D003195 3.5e-07 59.7 130 33.8
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 6.0e-07 58.9 241 25.3
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 1.0e-06 58.2 255 28.2
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 1.0e-06 58.2 225 29.3
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 1.3e-06 57.8 224 27.7
SEGI_40396 Sequoiadendron giganteum HOM05D003792 ORTHO05D003195 1.3e-06 57.8 144 29.2
CDE10G0229 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 2.3e-06 57.0 157 32.5
Glyma.02G131800 Glycine max HOM05D003792 ORTHO05D003195 2.3e-06 57.0 212 28.8
Lalb_Chr09g0328351 Lupinus albus HOM05D003792 ORTHO05D003195 3.0e-06 56.6 197 27.4
Lalb_Chr05g0219211 Lupinus albus HOM05D003792 ORTHO05D003195 3.9e-06 56.2 259 22.8
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 3.9e-06 56.2 215 28.8
Sabra09G0077200 Salix brachista HOM05D003792 ORTHO05D003195 3.9e-06 56.2 236 29.7
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 3.9e-06 56.2 168 28.6
MELO3C018454.2 Cucumis melo HOM05D003792 ORTHO05D003195 5.1e-06 55.8 250 27.6


User provided reference genes

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