Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g03930 Coffea canephora HOM05D001502 ORTHO05D002950 4.8e-103 377.9 193 100.0
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 1.0e-60 237.3 157 76.4
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.2e-60 236.1 157 76.4
Actinidia27382 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.1e-59 233.8 160 73.8
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 1.5e-59 233.4 160 75.0
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.0e-57 227.3 162 71.0
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.8e-57 226.5 162 71.0
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 2.6e-56 222.6 158 75.3
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 7.4e-56 221.1 157 70.1
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 2.2e-55 219.5 158 70.3
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 2.2e-55 219.5 157 70.1
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 2.2e-55 219.5 157 69.4
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 2.2e-55 219.5 158 69.6
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 3.7e-55 218.8 158 69.6
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 3.7e-55 218.8 161 69.6
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 4.8e-55 218.4 158 70.9
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 1.1e-54 217.2 157 69.4
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 1.8e-54 216.5 153 72.5
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 2.4e-54 216.1 157 70.1
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 3.1e-54 215.7 153 72.5
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 5.3e-54 214.9 162 69.1
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 9.1e-54 214.2 158 69.0
CAN.G774.38 Capsicum annuum HOM05D001502 ORTHO05D002950 9.1e-54 214.2 157 70.1
SalBow1G7558 Salvia bowleyana HOM05D001502 ORTHO05D002950 1.6e-53 213.4 154 70.1
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 2.0e-53 213.0 157 69.4
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 3.5e-53 212.2 158 67.1
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 4.5e-53 211.8 157 68.8
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 4.5e-53 211.8 162 69.1
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 4.5e-53 211.8 157 70.1
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 5.9e-53 211.5 159 67.3
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 1.0e-52 210.7 157 70.7
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.3e-52 210.3 160 68.1
Psat2g182400 Pisum sativum HOM05D001502 ORTHO05D002950 1.3e-52 210.3 157 67.5
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 1.3e-52 210.3 157 69.4
Migut.A00766 Erythranthe guttata HOM05D001502 ORTHO05D002950 1.7e-52 209.9 157 68.2
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 1.7e-52 209.9 157 68.2
Actinidia02007 Actinidia chinensis HOM05D001502 ORTHO05D002950 2.9e-52 209.1 161 67.7
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 2.9e-52 209.1 157 68.8
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 6.5e-52 208.0 158 69.0
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 1.1e-51 207.2 157 68.8
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 1.9e-51 206.5 161 65.2
CsaV3_5G002820 Cucumis sativus L. HOM05D001502 ORTHO05D002950 1.9e-51 206.5 158 65.8
DCAR_000610 Daucus carota HOM05D001502 ORTHO05D002950 1.9e-51 206.5 157 70.1
TPR.G16303 Trifolium pratense HOM05D001502 ORTHO05D002950 4.2e-51 205.3 157 65.6
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 7.2e-51 204.5 158 65.8
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 9.4e-51 204.1 157 70.1
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 1.2e-50 203.8 159 66.0
TPR.G6654 Trifolium pratense HOM05D001502 ORTHO05D002950 1.2e-50 203.8 157 65.6
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 1.6e-50 203.4 147 74.1
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 2.7e-50 202.6 157 66.9
RcHm_v2.0_Chr7g0197721 Rosa chinensis HOM05D001502 ORTHO05D002950 4.7e-50 201.8 162 64.8
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 1.0e-49 200.7 157 64.3
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 1.0e-49 200.7 161 65.2
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 1.4e-49 200.3 134 76.1
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 1.8e-49 199.9 158 65.8
Sed0021720 Sechium edule HOM05D001502 ORTHO05D002950 3.0e-49 199.1 159 64.8
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 8.8e-49 197.6 162 63.6
Aqoxy3G00056 Aquilegia oxysepala HOM05D001502 ORTHO05D002950 1.2e-48 197.2 158 65.2
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 1.5e-48 196.8 157 64.3
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 1.5e-48 196.8 157 65.0
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.0e-48 196.4 162 63.0
Prupe.5G100000 Prunus persica HOM05D001502 ORTHO05D002950 2.0e-48 196.4 158 64.6
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.6e-48 196.1 162 63.0
Migut.E01091 Erythranthe guttata HOM05D001502 ORTHO05D002950 9.7e-48 194.1 158 65.2
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 9.7e-48 194.1 139 71.2
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 9.7e-48 194.1 149 69.1
Hma1.2p1_0792F.1_g218570 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.3e-47 193.7 184 57.6
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 1.3e-47 193.7 160 62.5
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 1.7e-47 193.4 136 72.8
THA.LOC104814493 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 1.7e-47 193.4 161 59.0
MD06G1082900 Malus domestica HOM05D001502 ORTHO05D002950 2.2e-47 193.0 157 62.4
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 6.3e-47 191.4 160 65.6
MD14G1104300 Malus domestica HOM05D001502 ORTHO05D002950 8.3e-47 191.0 157 61.8
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 8.3e-47 191.0 157 62.4
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 1.8e-46 189.9 151 66.2
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 2.4e-46 189.5 151 66.2
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 2.4e-46 189.5 161 58.4
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 2.4e-46 189.5 157 63.1
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 5.3e-46 188.3 157 63.1
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 2.7e-45 186.0 139 67.6
TPR.G12968 Trifolium pratense HOM05D001502 ORTHO05D002950 1.0e-44 184.1 157 61.8
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 1.3e-44 183.7 129 71.3
HPP92_025727 Vanilla planifolia HOM05D001502 ORTHO05D002950 2.2e-44 183.0 150 60.7
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 3.8e-44 182.2 151 64.2
AUR62017203 Chenopodium quinoa HOM05D001502 ORTHO05D002950 3.8e-44 182.2 151 64.2
Cpa.g.sc74.49 Carica papaya HOM05D001502 ORTHO05D002950 3.2e-43 179.1 130 70.0
Sed0014228 Sechium edule HOM05D001502 ORTHO05D002950 3.2e-43 179.1 159 61.0
arahy.Tifrunner.gnm1.ann1.W3TBCC Arachis hypogaea HOM05D001502 ORTHO05D002950 7.2e-43 177.9 157 59.9
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 7.2e-43 177.9 132 68.9
Haze_08835 Corylus avellana HOM05D001502 ORTHO05D002950 1.2e-42 177.2 128 71.9
arahy.Tifrunner.gnm1.ann1.HI8SJE Arachis hypogaea HOM05D001502 ORTHO05D002950 2.7e-42 176.0 157 58.6
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 4.7e-42 175.3 206 50.5
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 1.8e-41 173.3 149 59.7
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 6.8e-41 171.4 132 66.7
Medtr8g098290 Medicago truncatula HOM05D001502 ORTHO05D002950 3.4e-40 169.1 139 64.0
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 5.7e-40 168.3 196 47.4
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 1.3e-39 167.2 132 60.6
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 1.7e-39 166.8 148 60.8
Lalb_Chr09g0320971 Lupinus albus HOM05D001502 ORTHO05D002950 2.2e-39 166.4 140 61.4
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 2.8e-39 166.0 141 63.8
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 3.7e-39 165.6 137 63.5
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 4.9e-39 165.2 141 63.8
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 4.9e-39 165.2 141 63.8
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 4.9e-39 165.2 131 67.2
Os01g0527400 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002950 6.3e-39 164.9 163 53.4
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 8.3e-39 164.5 144 61.8
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.4e-38 163.7 132 65.2
BraA02t07622Z Brassica rapa HOM05D001502 ORTHO05D002950 1.8e-38 163.3 156 57.7
TAR375G0676 Trochodendron aralioides HOM05D001502 ORTHO05D002950 5.4e-38 161.8 159 57.9
BcaB01g02692 Brassica carinata HOM05D001502 ORTHO05D002950 1.2e-37 160.6 149 58.4
BcaB05g23821 Brassica carinata HOM05D001502 ORTHO05D002950 1.2e-37 160.6 154 57.8
Thhalv10028529m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 1.6e-37 160.2 154 56.5
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 2.0e-37 159.8 139 60.4
Sp6g05920 Schrenkiella parvula HOM05D001502 ORTHO05D002950 2.7e-37 159.5 151 56.3
A03p29400 Brassica napus HOM05D001502 ORTHO05D002950 1.3e-36 157.1 149 55.7
Medtr8g098260 Medicago truncatula HOM05D001502 ORTHO05D002950 2.3e-36 156.4 142 57.7
BolC3t15864H Brassica oleracea HOM05D001502 ORTHO05D002950 3.8e-36 155.6 149 55.7
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 3.8e-36 155.6 127 62.2
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 1.1e-35 154.1 170 54.7
C03p35530 Brassica napus HOM05D001502 ORTHO05D002950 1.5e-35 153.7 144 56.2
Ciclev10003744m.g Citrus clementina HOM05D001502 ORTHO05D002950 1.9e-35 153.3 170 51.8
BcaC01g04626 Brassica carinata HOM05D001502 ORTHO05D002950 3.3e-35 152.5 144 56.2
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 3.3e-35 152.5 106 72.6
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 5.5e-35 151.8 147 53.7
Gohir.A08G182600 Gossypium hirsutum HOM05D001502 ORTHO05D002950 5.5e-35 151.8 106 72.6
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 1.2e-34 150.6 102 72.5
CAN.G774.45 Capsicum annuum HOM05D001502 ORTHO05D002950 1.6e-34 150.2 108 69.4
SEGI_08344 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 1.6e-34 150.2 164 50.6
THA.LOC104813019 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 2.8e-34 149.4 139 58.3
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 6.1e-34 148.3 165 53.3
BcaB01g01539 Brassica carinata HOM05D001502 ORTHO05D002950 1.4e-33 147.1 151 55.0
BcaC03g14142 Brassica carinata HOM05D001502 ORTHO05D002950 1.4e-33 147.1 150 52.7
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 2.3e-33 146.4 147 52.4
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 4.0e-33 145.6 147 53.7
BraA09t38408Z Brassica rapa HOM05D001502 ORTHO05D002950 1.2e-32 144.1 151 54.3
CARHR254850 Cardamine hirsuta HOM05D001502 ORTHO05D002950 1.2e-32 144.1 152 52.0
BolC2t07531H Brassica oleracea HOM05D001502 ORTHO05D002950 4.4e-32 142.1 150 51.3
Glyma.01G220200 Glycine max HOM05D001502 ORTHO05D002950 4.4e-32 142.1 113 61.9
BraA09t38407Z Brassica rapa HOM05D001502 ORTHO05D002950 7.5e-32 141.4 151 53.6
VMungo1215G2558 Vigna mungo HOM05D001502 ORTHO05D002950 2.8e-31 139.4 115 60.9
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 1.8e-30 136.7 107 65.4
Phvul.002G157900 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 1.8e-30 136.7 115 60.0
BcaB01g01656 Brassica carinata HOM05D001502 ORTHO05D002950 4.1e-30 135.6 153 49.7
Mapoly0111s0032 Marchantia polymorpha HOM05D001502 ORTHO05D002950 9.2e-30 134.4 135 53.3
MD07G1059700 Malus domestica HOM05D001502 ORTHO05D002950 5.9e-29 131.7 106 60.4
Lalb_Chr09g0320961 Lupinus albus HOM05D001502 ORTHO05D002950 2.9e-28 129.4 102 61.8
Nitab4.5_0023620g0010 Nicotiana tabacum HOM05D001502 ORTHO05D002950 5.0e-28 128.6 147 51.0
SMO364G0341 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 6.6e-28 128.3 132 48.5
Pp3c14_3750 Physcomitrium patens HOM05D001502 ORTHO05D002950 2.5e-27 126.3 128 50.0
SEGI_18030 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 7.3e-27 124.8 127 51.2
BcaB01g01516 Brassica carinata HOM05D001502 ORTHO05D002950 2.1e-26 123.2 101 60.4
BcaC04g21150 Brassica carinata HOM05D001502 ORTHO05D002950 4.7e-26 122.1 97 60.8
BolC9t56342H Brassica oleracea HOM05D001502 ORTHO05D002950 4.7e-26 122.1 97 60.8
Pp3c1_20810 Physcomitrium patens HOM05D001502 ORTHO05D002950 6.1e-26 121.7 128 47.7
AagrBONN_evm.TU.Sc2ySwM_344.901 Anthoceros agrestis HOM05D001502 ORTHO05D002950 3.1e-25 119.4 132 49.2
BraA09t38328Z Brassica rapa HOM05D001502 ORTHO05D002950 3.1e-25 119.4 97 59.8
CAN.G774.29 Capsicum annuum HOM05D001502 ORTHO05D002950 3.1e-25 119.4 164 47.0
CBR_g52340 Chara braunii HOM05D001502 ORTHO05D002950 2.6e-24 116.3 130 48.5
BcaC04g21078 Brassica carinata HOM05D001502 ORTHO05D002950 3.4e-24 115.9 157 47.8
BcaC03g16347 Brassica carinata HOM05D001502 ORTHO05D002950 3.9e-20 102.4 156 45.5
FvH4_5g02390 Fragaria vesca HOM05D001502 ORTHO05D002950 8.6e-20 101.3 85 61.2
CAN.G774.30 Capsicum annuum HOM05D001502 ORTHO05D002950 1.2e-18 97.4 126 50.8
BcaC04g21076 Brassica carinata HOM05D001502 ORTHO05D002950 1.6e-18 97.1 151 41.7
CAN.G4310.1 Capsicum annuum HOM05D001502 ORTHO05D002950 6.0e-13 78.6 52 75.0
CARHR101270 Cardamine hirsuta HOM05D001502 ORTHO05D002950 1.7e-12 77.0 73 54.8
SGA_v2.0_scaffold173G39192 Striga asiatica HOM05D001502 ORTHO05D002950 1.7e-12 77.0 81 49.4
PSO675G1241 Papaver somniferum HOM05D001502 ORTHO05D002950 3.0e-12 76.3 94 43.6
PSO675G2714 Papaver somniferum HOM05D001502 ORTHO05D002950 3.9e-12 75.9 94 43.6
PSO732G0359 Papaver somniferum HOM05D001502 ORTHO05D002950 6.6e-12 75.1 94 42.6
unitig_0.g2859 Utricularia gibba HOM05D001502 ORTHO05D002950 1.1e-11 74.3 77 54.5
PSO724G0222 Papaver somniferum HOM05D001502 ORTHO05D002950 1.9e-11 73.6 96 40.6
PSO729G0025 Papaver somniferum HOM05D001502 ORTHO05D002950 1.9e-11 73.6 96 40.6
Gohir.D08G201100 Gossypium hirsutum HOM05D001502 ORTHO05D002950 5.6e-11 72.0 52 69.2
SEGI_02304 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 4.7e-10 68.9 78 48.7
CAN.G774.28 Capsicum annuum HOM05D001502 ORTHO05D002950 6.2e-10 68.6 65 58.5
Sc22g0005600 Simmondsia chinensis HOM05D001502 ORTHO05D002950 6.2e-10 68.6 52 69.2
SMO353G0270 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 2.6e-08 63.2 75 45.3


User provided reference genes

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