Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 1.3e-134 483.0 240 100.0
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 7.6e-66 254.6 243 61.3
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 1.9e-64 250.0 239 61.1
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 2.5e-61 239.6 243 58.4
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 9.6e-61 237.7 243 56.0
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 1.2e-58 230.7 245 56.3
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 9.9e-58 227.6 241 55.2
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 9.9e-58 227.6 242 55.8
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 1.3e-57 227.3 247 54.3
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 6.4e-57 224.9 247 55.1
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 4.6e-55 218.8 245 53.9
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 1.3e-54 217.2 242 54.1
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 1.1e-53 214.2 238 52.1
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 9.6e-53 211.1 245 53.9
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 2.1e-52 209.9 239 50.6
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 2.1e-52 209.9 242 53.3
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 4.8e-52 208.8 242 50.8
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 1.8e-51 206.8 243 54.3
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 3.1e-51 206.1 236 53.4
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 1.2e-50 204.1 242 52.5
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 2.9e-49 199.5 244 50.4
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 3.8e-49 199.1 247 51.4
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 1.1e-48 197.6 241 51.5
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 3.2e-48 196.1 241 50.2
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.2e-47 194.1 235 50.2
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 2.1e-47 193.4 239 50.6
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 2.7e-47 193.0 242 49.6
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 3.5e-47 192.6 241 51.0
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 3.5e-47 192.6 241 49.4
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 6.0e-47 191.8 243 50.6
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 1.3e-46 190.7 242 49.6
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 3.9e-46 189.1 238 47.9
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 6.7e-46 188.3 243 49.4
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 9.6e-45 184.5 244 48.8
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 1.3e-44 184.1 239 47.3
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 2.1e-44 183.3 243 49.0
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 8.1e-44 181.4 241 48.5
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 1.1e-43 181.0 244 49.2
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.1e-43 181.0 241 49.0
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 1.4e-43 180.6 207 51.2
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 1.8e-43 180.3 207 51.2
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 1.5e-42 177.2 250 47.2
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 1.3e-41 174.1 241 46.1
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 2.9e-41 172.9 244 45.9
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 3.8e-41 172.6 251 45.4
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 3.8e-41 172.6 245 46.1
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 1.1e-40 171.0 246 45.9
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 1.9e-40 170.2 246 46.3
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 3.2e-40 169.5 200 50.5
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 5.5e-40 168.7 243 45.7
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 5.5e-40 168.7 220 46.8
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 7.1e-40 168.3 235 46.0
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 7.1e-40 168.3 235 46.0
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 1.6e-39 167.2 240 45.0
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 2.1e-39 166.8 247 44.9
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 6.0e-39 165.2 219 48.4
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 1.0e-38 164.5 220 46.8
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 1.0e-38 164.5 240 44.2
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 3.0e-38 162.9 246 43.1
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 3.9e-38 162.5 243 44.0
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 5.1e-38 162.2 237 46.8
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 5.6e-37 158.7 247 44.9
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 1.3e-36 157.5 205 47.8
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 8.2e-36 154.8 242 43.4
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 1.1e-35 154.5 225 45.8
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 1.8e-35 153.7 218 45.0
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 3.1e-35 152.9 237 43.0
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 3.1e-35 152.9 220 43.2
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 1.5e-34 150.6 245 42.4
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 4.5e-34 149.1 244 42.2
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 2.2e-33 146.7 244 41.4
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 2.2e-33 146.7 239 41.0
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 3.8e-33 146.0 244 41.8
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 1.1e-32 144.4 239 42.3
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 4.2e-32 142.5 244 41.4
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 9.3e-32 141.4 214 44.4
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 2.1e-31 140.2 214 44.4
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 6.0e-31 138.7 244 39.3
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 6.0e-31 138.7 198 43.9
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 6.0e-31 138.7 237 42.2
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 1.3e-30 137.5 240 38.8
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 1.3e-30 137.5 128 55.5
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.8e-30 137.1 249 41.0
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 3.9e-30 136.0 239 41.4
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 3.9e-30 136.0 238 41.2
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 7.4e-29 131.7 163 46.0
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 9.7e-29 131.3 258 38.0
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.8e-28 129.8 243 38.3
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 3.7e-28 129.4 245 38.8
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 4.1e-27 125.9 217 39.6
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 5.3e-27 125.6 254 36.2
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.2e-26 124.4 205 41.0
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 1.4e-24 117.5 249 33.7
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 1.9e-24 117.1 253 36.8
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 3.2e-24 116.3 204 38.7
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 4.2e-24 115.9 258 35.7
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 4.2e-24 115.9 196 42.3
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 4.2e-24 115.9 200 40.0
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 8.7e-22 108.2 243 34.2
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 1.1e-21 107.8 252 35.3
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 1.1e-21 107.8 252 35.3
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 1.5e-21 107.5 243 36.2
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 1.5e-21 107.5 243 36.2
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 7.4e-21 105.1 242 35.1
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 7.4e-21 105.1 242 35.1
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 5.3e-19 99.0 224 38.4
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 6.9e-19 98.6 250 33.2
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 1.0e-17 94.7 221 36.7
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 1.7e-17 94.0 261 31.4
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 1.7e-17 94.0 244 32.0
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 2.2e-17 93.6 259 33.6
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 8.5e-17 91.7 276 32.6
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.1e-16 91.3 240 32.5
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 7.2e-16 88.6 111 51.4
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 2.1e-15 87.0 242 31.8
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 2.1e-15 87.0 236 30.9
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 2.3e-14 83.6 206 32.5
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 4.4e-13 79.3 127 45.7
EL10Ac1g01104 Beta vulgaris HOM05D001755 ORTHO05D001665 2.8e-12 76.6 239 29.7
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 4.8e-12 75.9 108 46.3
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 8.2e-12 75.1 185 34.6
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 1.1e-11 74.7 168 36.9
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 4.1e-11 72.8 225 28.9
PGSC0003DMG400012901 Solanum tuberosum HOM05D001755 ORTHO05D001665 1.5e-10 70.9 240 26.7
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 2.6e-10 70.1 126 38.1
Sc26g0000240 Simmondsia chinensis HOM05D001755 ORTHO05D001665 3.4e-10 69.7 228 29.4
Cc10_g15590 Coffea canephora HOM05D001755 ORTHO05D001665 4.5e-10 69.3 281 26.3
CAN.G1658.8 Capsicum annuum HOM05D001755 ORTHO05D001665 8.5e-09 65.1 243 25.9
Solyc04g076030.3 Solanum lycopersicum HOM05D001755 ORTHO05D001665 1.4e-08 64.3 240 25.8
AUR62027851 Chenopodium quinoa HOM05D001755 ORTHO05D001665 1.9e-08 63.9 251 25.1
Duzib093G0625 Durio zibethinus HOM05D001755 ORTHO05D001665 1.9e-08 63.9 236 24.6
Sopen04g029980 Solanum pennellii HOM05D001755 ORTHO05D001665 1.9e-08 63.9 240 25.4
Thecc.08G067700 Theobroma cacao HOM05D001755 ORTHO05D001665 3.2e-08 63.2 177 29.4
Duzib041G0605 Durio zibethinus HOM05D001755 ORTHO05D001665 4.2e-08 62.8 244 24.2
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 5.5e-08 62.4 109 36.7
AUR62019010 Chenopodium quinoa HOM05D001755 ORTHO05D001665 5.5e-08 62.4 251 25.1
Migut.L01931 Erythranthe guttata HOM05D001755 ORTHO05D001665 7.2e-08 62.0 198 28.8
Manes.18G061300 Manihot esculenta HOM05D001755 ORTHO05D001665 7.2e-08 62.0 299 26.1
SGA_v2.0_scaffold94G28577 Striga asiatica HOM05D001755 ORTHO05D001665 7.2e-08 62.0 200 29.5
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 3.6e-07 59.7 247 24.3
Aqoxy6G01464 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 3.6e-07 59.7 247 26.3
Ah.05g170640 Amaranthus hybridus HOM05D001755 ORTHO05D001665 4.7e-07 59.3 238 27.3
PSO675G6469 Papaver somniferum HOM05D001755 ORTHO05D001665 6.1e-07 58.9 235 25.5
Nitab4.5_0002025g0030 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.0e-06 58.2 277 24.5
Aa31LG1G17560 Aethionema arabicum HOM05D001755 ORTHO05D001665 1.4e-06 57.8 200 25.5
A02p43280 Brassica napus HOM05D001755 ORTHO05D001665 1.8e-06 57.4 174 27.0
HPP92_004103 Vanilla planifolia HOM05D001755 ORTHO05D001665 1.8e-06 57.4 216 28.2
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 2.3e-06 57.0 209 26.3
TAR376G0504 Trochodendron aralioides HOM05D001755 ORTHO05D001665 2.3e-06 57.0 253 26.9
HPP92_004086 Vanilla planifolia HOM05D001755 ORTHO05D001665 2.3e-06 57.0 215 28.8
CiPaw.05G031200 Carya illinoinensis HOM05D001755 ORTHO05D001665 3.0e-06 56.6 245 24.9
THA.LOC104806804 Tarenaya hassleriana HOM05D001755 ORTHO05D001665 3.0e-06 56.6 259 24.7
PSO541G2838 Papaver somniferum HOM05D001755 ORTHO05D001665 3.9e-06 56.2 235 24.3
Sc23g0000580 Simmondsia chinensis HOM05D001755 ORTHO05D001665 3.9e-06 56.2 284 26.1
BraA02t09252Z Brassica rapa HOM05D001755 ORTHO05D001665 5.2e-06 55.8 168 27.4
Gohir.D05G267500 Gossypium hirsutum HOM05D001755 ORTHO05D001665 5.2e-06 55.8 244 23.8
TAR628G0401 Trochodendron aralioides HOM05D001755 ORTHO05D001665 5.2e-06 55.8 245 24.9
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 6.7e-06 55.5 105 33.3
Carub.0008s2513 Capsella rubella HOM05D001755 ORTHO05D001665 8.8e-06 55.1 210 27.6


User provided reference genes

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