Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 8.2e-79 297.0 148 100.0
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 4.7e-74 281.2 145 96.6
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 2.7e-66 255.4 143 85.3
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.3e-65 252.3 143 84.6
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 5.2e-65 251.1 143 85.3
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.0e-64 249.2 156 79.5
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.0e-64 249.2 156 80.1
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 2.0e-64 249.2 156 80.1
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.6e-64 248.8 157 79.0
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.3e-64 248.4 156 78.8
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.4e-64 248.1 156 79.5
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 7.4e-64 247.3 156 78.2
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 9.7e-64 246.9 151 81.5
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.7e-63 246.1 156 78.8
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 3.7e-63 245.0 155 79.4
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 3.7e-63 245.0 154 79.9
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 3.7e-63 245.0 156 78.2
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.8e-63 244.6 156 78.8
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 6.3e-63 244.2 140 85.7
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 8.2e-63 243.8 156 78.2
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 8.2e-63 243.8 131 88.5
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 8.2e-63 243.8 140 85.7
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 8.2e-63 243.8 156 78.2
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.1e-62 243.4 155 79.4
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.8e-62 242.7 140 85.0
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.8e-62 242.7 156 77.6
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 3.1e-62 241.9 155 78.7
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 3.1e-62 241.9 162 75.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 5.3e-62 241.1 151 80.1
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 5.3e-62 241.1 140 84.3
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 5.3e-62 241.1 155 77.4
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 7.0e-62 240.7 155 78.7
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 7.0e-62 240.7 155 78.7
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 7.0e-62 240.7 152 80.3
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 9.1e-62 240.4 155 78.1
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 9.1e-62 240.4 155 77.4
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 9.1e-62 240.4 156 76.9
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.2e-61 240.0 154 77.9
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.6e-61 239.6 155 78.7
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.6e-61 239.6 140 85.0
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 2.0e-61 239.2 155 78.1
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 2.0e-61 239.2 155 78.1
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.0e-61 239.2 143 81.8
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.6e-61 238.8 156 76.9
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 3.5e-61 238.4 155 76.8
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.5e-61 238.4 155 77.4
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.5e-61 238.4 155 77.4
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 5.9e-61 237.7 155 76.1
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 5.9e-61 237.7 155 78.1
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 7.7e-61 237.3 155 76.8
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.3e-60 236.5 153 75.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.7e-60 236.1 139 84.2
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.7e-60 236.1 141 81.6
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 2.2e-60 235.7 139 82.7
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.2e-60 235.7 155 76.8
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 2.2e-60 235.7 155 76.8
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 2.9e-60 235.3 139 82.7
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 2.9e-60 235.3 143 79.7
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.9e-60 235.3 155 76.8
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 3.8e-60 235.0 138 84.8
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.8e-60 235.0 154 77.3
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.5e-60 234.2 157 76.4
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 8.5e-60 233.8 155 74.8
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 8.5e-60 233.8 155 74.8
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 8.5e-60 233.8 155 76.8
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 8.5e-60 233.8 156 78.2
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 8.5e-60 233.8 155 76.8
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 8.5e-60 233.8 155 74.8
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.1e-59 233.4 154 76.6
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.1e-59 233.4 154 76.6
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.5e-59 233.0 152 77.0
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.5e-59 233.0 152 77.0
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.5e-59 233.0 155 74.2
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.9e-59 232.6 142 81.0
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.9e-59 232.6 142 82.4
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.2e-59 231.9 155 76.8
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.5e-59 231.1 158 76.6
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 5.5e-59 231.1 155 74.2
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 7.2e-59 230.7 155 74.8
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 9.4e-59 230.3 154 75.3
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 9.4e-59 230.3 153 75.2
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 9.4e-59 230.3 139 82.7
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 9.4e-59 230.3 139 82.7
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 9.4e-59 230.3 153 75.8
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.2e-58 229.9 142 78.9
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.2e-58 229.9 130 86.2
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 1.6e-58 229.6 154 74.7
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 2.7e-58 228.8 153 74.5
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.7e-58 228.8 154 76.0
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 3.6e-58 228.4 151 76.8
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.6e-58 228.4 153 75.2
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 3.6e-58 228.4 153 75.2
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 4.7e-58 228.0 153 75.2
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 4.7e-58 228.0 153 75.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 4.7e-58 228.0 153 75.2
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 4.7e-58 228.0 125 88.0
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 8.0e-58 227.3 152 75.7
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 8.0e-58 227.3 153 75.2
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 1.0e-57 226.9 153 74.5
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.0e-57 226.9 131 83.2
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.3e-57 225.7 153 74.5
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 3.0e-57 225.3 153 73.2
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 5.2e-57 224.6 154 74.7
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 8.8e-57 223.8 153 73.9
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.5e-56 223.0 153 73.2
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.5e-56 223.0 153 73.2
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.5e-56 223.0 153 73.2
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.5e-56 223.0 153 73.2
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 2.0e-56 222.6 212 59.0
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.3e-56 221.9 153 72.5
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 3.7e-55 218.4 153 72.5
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 3.7e-55 218.4 122 86.9
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.0e-53 212.6 122 86.1
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 4.5e-53 211.5 116 85.3
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 2.9e-52 208.8 134 74.6
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 2.7e-50 202.2 141 71.6
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.4e-46 189.1 197 53.3
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 9.1e-46 187.2 103 86.4
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 8.6e-44 180.6 138 64.5
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 8.6e-44 180.6 130 67.7
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 2.5e-43 179.1 134 66.4
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 5.5e-43 177.9 99 87.9
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 1.8e-41 172.9 128 66.4
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 1.5e-40 169.9 127 66.1
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 3.4e-40 168.7 152 61.8
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.1e-38 161.8 97 79.4
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.5e-37 158.7 142 60.6
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.9e-36 155.6 154 57.1
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.2e-32 143.7 124 54.8
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.5e-27 126.7 128 50.0
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.2e-26 123.6 68 85.3
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.6e-26 122.1 151 44.4
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.5e-21 105.5 57 86.0
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.5e-21 105.5 57 86.0
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 3.3e-19 99.0 49 93.9
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.4e-15 84.7 75 61.3
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.4e-14 82.8 131 42.7
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 4.7e-10 68.6 51 70.6
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.4e-09 67.0 51 68.6
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 1.8e-09 66.6 61 59.0
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 6.4e-07 58.2 32 78.1
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.2e-06 55.8 117 34.2


User provided reference genes

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