Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 7.3e-147 523.9 263 100.0
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 8.3e-74 281.2 145 96.6
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 8.9e-68 261.2 145 86.2
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.3e-66 257.3 158 79.1
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.7e-66 256.9 150 81.3
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.1e-65 252.3 152 81.6
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 4.1e-65 252.3 152 81.6
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 5.4e-65 251.9 151 82.8
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 7.0e-65 251.5 149 80.5
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.2e-64 250.8 154 80.5
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.6e-64 250.4 149 81.2
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.7e-64 249.6 154 79.9
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.5e-64 249.2 154 79.9
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 3.5e-64 249.2 152 80.3
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 4.5e-64 248.8 145 82.8
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 4.5e-64 248.8 159 78.6
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 7.8e-64 248.1 136 87.5
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.3e-63 246.5 155 79.4
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 2.3e-63 246.5 164 73.8
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 2.9e-63 246.1 145 83.4
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.9e-63 246.1 160 76.2
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 3.8e-63 245.7 152 78.9
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 5.0e-63 245.4 145 82.8
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.3e-62 242.7 153 81.0
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 4.3e-62 242.3 154 79.2
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 7.3e-62 241.5 154 79.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 7.3e-62 241.5 149 78.5
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 7.3e-62 241.5 136 85.3
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.2e-61 240.7 145 82.8
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.6e-61 240.4 145 82.8
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.6e-61 240.4 145 82.8
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.6e-61 240.4 145 82.8
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.6e-61 240.4 145 81.4
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.6e-61 240.4 156 76.3
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 2.1e-61 240.0 154 79.2
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 3.6e-61 239.2 154 78.6
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 4.7e-61 238.8 145 82.1
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 4.7e-61 238.8 149 80.5
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 6.1e-61 238.4 155 78.1
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 6.1e-61 238.4 152 79.6
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 6.1e-61 238.4 145 81.4
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 8.0e-61 238.0 145 81.4
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.0e-60 237.7 142 83.1
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.0e-60 237.7 145 81.4
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.0e-60 237.7 145 82.1
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.0e-60 237.7 149 79.9
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.0e-60 237.7 145 81.4
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.0e-60 237.7 145 83.4
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.0e-60 237.7 183 69.4
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.0e-60 237.7 152 75.7
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.8e-60 236.9 145 81.4
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 2.3e-60 236.5 145 80.7
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 3.0e-60 236.1 149 79.2
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 3.0e-60 236.1 149 79.2
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 3.0e-60 236.1 145 80.7
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 5.2e-60 235.3 145 81.4
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 5.2e-60 235.3 145 81.4
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 6.8e-60 235.0 149 79.9
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 6.8e-60 235.0 149 79.9
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 8.9e-60 234.6 149 78.5
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 8.9e-60 234.6 149 79.9
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.5e-59 233.8 154 77.3
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.5e-59 233.8 145 81.4
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.0e-59 233.4 149 77.2
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.0e-59 233.4 145 80.7
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.0e-59 233.4 145 80.7
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.6e-59 233.0 149 77.9
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.6e-59 233.0 153 77.8
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 4.4e-59 232.3 148 80.4
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.4e-59 232.3 148 80.4
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.4e-59 232.3 153 76.5
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.7e-59 231.9 150 75.3
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.7e-59 231.9 150 75.3
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 5.7e-59 231.9 149 76.5
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 9.8e-59 231.1 145 80.0
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 9.8e-59 231.1 149 77.9
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.3e-58 230.7 149 77.9
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 1.3e-58 230.7 149 77.9
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.3e-58 230.7 149 77.2
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.9e-58 229.6 149 77.2
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 2.9e-58 229.6 154 74.7
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 2.9e-58 229.6 152 76.3
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.9e-58 229.6 152 76.3
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 3.7e-58 229.2 154 74.7
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 3.7e-58 229.2 201 61.2
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 3.7e-58 229.2 154 74.7
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 4.9e-58 228.8 145 75.9
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 6.4e-58 228.4 149 77.2
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 8.3e-58 228.0 148 77.7
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 8.3e-58 228.0 137 80.3
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 8.3e-58 228.0 149 75.8
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 8.3e-58 228.0 147 75.5
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.3e-58 228.0 154 76.0
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 8.3e-58 228.0 125 88.0
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.1e-57 227.6 145 77.9
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.1e-57 227.6 154 74.0
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 1.4e-57 227.3 150 75.3
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 2.4e-57 226.5 149 75.8
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.4e-57 226.5 149 76.5
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 3.2e-57 226.1 149 75.2
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 3.2e-57 226.1 149 75.8
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-56 223.4 149 75.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 2.0e-56 223.4 149 75.2
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 6.0e-56 221.9 149 74.5
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.0e-55 221.1 131 80.2
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 3.9e-55 219.2 149 73.2
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 3.9e-55 219.2 149 73.2
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 3.9e-55 219.2 149 73.2
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 3.9e-55 219.2 149 73.2
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 6.6e-55 218.4 149 74.5
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 6.6e-55 218.4 122 86.9
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 8.6e-55 218.0 149 72.5
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.6e-53 212.6 122 86.1
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 6.2e-53 211.8 144 72.2
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 8.0e-53 211.5 116 85.3
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 4.9e-50 202.2 150 68.0
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.5e-46 189.9 205 52.2
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 2.1e-45 186.8 105 85.7
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 5.2e-44 182.2 149 61.1
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 4.4e-43 179.1 138 65.9
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 5.8e-43 178.7 149 60.4
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.7e-42 177.2 99 87.9
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 3.2e-41 172.9 150 58.7
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 7.1e-41 171.8 140 61.4
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.6e-40 170.6 146 65.1
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.3e-38 162.5 149 59.7
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 7.3e-38 161.8 97 79.4
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.0e-35 153.7 150 55.3
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 2.1e-32 143.7 124 54.8
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 2.6e-27 126.7 128 50.0
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 5.8e-27 125.6 151 45.7
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.2e-26 123.6 68 85.3
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.8e-20 104.0 57 86.0
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.8e-20 104.0 57 86.0
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 1.3e-18 97.8 49 93.9
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.3e-15 87.0 70 65.7
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 4.3e-14 82.8 131 42.7
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 1.2e-11 74.7 59 64.4
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 1.6e-08 64.3 50 60.0
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.9e-06 57.4 43 67.4
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.9e-06 57.4 43 67.4


User provided reference genes

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