Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.4e-193 679.5 341 100.0
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 9.5e-155 550.4 341 80.6
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 6.1e-154 547.7 344 79.4
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 9.8e-152 540.4 344 78.5
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 9.2e-150 533.9 346 77.2
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.7e-149 532.3 339 78.5
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.6e-149 531.6 341 78.0
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.1e-147 526.9 330 77.6
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.5e-147 526.6 332 77.7
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.9e-147 526.2 336 77.7
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 3.3e-147 525.4 341 77.1
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.3e-147 525.0 346 75.7
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 3.1e-145 518.8 326 76.4
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 5.2e-145 518.1 331 75.8
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 8.9e-145 517.3 325 76.6
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 8.9e-145 517.3 330 76.4
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.5e-144 514.2 328 75.9
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.2e-143 512.7 325 77.2
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 4.9e-143 511.5 323 77.1
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.4e-143 511.1 325 75.7
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.4e-142 510.0 328 75.0
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.2e-142 508.8 335 76.4
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 5.4e-142 508.1 333 75.4
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.6e-141 506.5 340 75.0
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.6e-141 506.5 324 76.5
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.0e-141 506.1 325 76.9
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.0e-141 506.1 320 78.8
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.7e-141 505.8 326 74.8
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.5e-141 505.4 330 75.2
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 4.6e-141 505.0 339 75.5
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 6.0e-141 504.6 329 75.4
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 6.0e-141 504.6 329 75.4
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.3e-140 503.4 323 74.9
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.0e-140 502.3 324 75.3
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 3.0e-140 502.3 326 74.2
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.0e-140 502.3 323 74.9
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 3.9e-140 501.9 323 76.2
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.9e-140 501.9 339 75.5
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.0e-140 501.5 322 78.3
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.6e-140 500.7 323 75.2
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.1e-139 500.4 338 72.8
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 3.3e-139 498.8 333 72.7
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 4.3e-139 498.4 359 70.5
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 5.6e-139 498.0 323 75.9
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 5.6e-139 498.0 323 74.3
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 5.6e-139 498.0 323 74.3
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 7.3e-139 497.7 325 74.5
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.8e-138 495.7 322 74.2
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 3.6e-138 495.4 309 79.0
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 8.1e-138 494.2 326 73.6
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 8.1e-138 494.2 341 71.6
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.1e-137 493.8 346 71.1
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.4e-137 493.4 330 73.0
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.4e-137 493.4 323 73.4
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 6.8e-137 491.1 362 68.8
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.5e-136 490.0 328 73.2
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.5e-136 490.0 373 68.6
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 4.4e-136 488.4 330 71.2
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 4.4e-136 488.4 323 74.0
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.8e-136 488.0 326 73.6
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.9e-135 485.0 326 72.1
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 4.9e-135 485.0 326 72.4
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 6.4e-135 484.6 327 72.2
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.9e-134 483.0 338 70.4
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.4e-134 482.6 324 72.8
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 7.1e-134 481.1 330 70.9
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 7.1e-134 481.1 339 69.6
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.5e-133 478.8 323 72.8
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 7.8e-133 477.6 332 71.4
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 3.0e-132 475.7 326 71.5
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.0e-132 475.7 322 70.2
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.9e-132 475.3 321 72.3
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.1e-132 474.9 304 76.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 6.6e-132 474.6 313 74.8
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 6.6e-132 474.6 305 77.0
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 8.6e-132 474.2 321 72.9
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.1e-131 473.8 327 71.6
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.1e-131 473.8 327 70.9
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.5e-131 473.4 329 72.6
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.9e-131 473.0 334 70.1
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.5e-131 472.6 328 69.8
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 5.6e-131 471.5 313 76.4
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 7.3e-131 471.1 319 71.8
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 7.3e-131 471.1 331 69.5
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 9.5e-131 470.7 327 71.3
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.6e-130 469.9 323 70.3
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.1e-130 469.5 334 69.5
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.1e-130 469.5 322 71.4
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.8e-130 469.2 319 71.2
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.8e-130 469.2 304 75.0
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 3.6e-130 468.8 335 68.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 4.7e-130 468.4 323 71.8
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 6.2e-130 468.0 365 67.1
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 6.2e-130 468.0 345 69.0
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.4e-129 466.8 319 71.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.4e-129 466.8 325 69.5
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 4.0e-129 465.3 319 71.2
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 6.8e-129 464.5 319 70.8
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 8.9e-129 464.2 324 69.4
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-128 463.8 320 70.9
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.5e-128 463.4 330 69.7
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.5e-128 463.4 332 69.0
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.0e-128 463.0 340 68.2
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.0e-128 463.0 327 68.8
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 7.6e-128 461.1 320 70.9
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 9.9e-128 460.7 320 70.9
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.3e-127 460.3 309 73.8
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.2e-127 459.5 320 71.2
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 3.7e-127 458.8 359 65.2
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 3.7e-127 458.8 324 69.1
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 4.9e-127 458.4 330 69.1
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 6.4e-127 458.0 319 69.6
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 3.2e-126 455.7 319 69.6
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.6e-125 453.4 324 69.1
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 2.1e-125 453.0 325 69.8
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 3.9e-124 448.7 322 69.3
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 5.1e-124 448.4 342 67.0
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.2e-122 443.7 327 68.2
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.4e-121 440.3 387 59.4
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 4.4e-120 435.3 528 48.5
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 7.6e-120 434.5 323 67.8
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.7e-119 433.3 330 66.4
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.9e-119 432.6 324 67.9
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.4e-118 430.3 325 67.1
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 2.1e-114 416.4 264 76.5
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 4.4e-112 408.7 308 65.6
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 3.9e-108 395.6 251 75.7
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 3.9e-108 395.6 265 74.0
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-104 384.0 322 62.7
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.6e-104 382.9 332 59.6
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.4e-102 376.3 265 72.1
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 4.2e-94 349.0 315 56.5
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 9.3e-94 347.8 327 55.0
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.1e-91 340.9 206 80.1
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.5e-91 340.5 208 82.7
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 9.6e-91 337.8 231 72.7
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.4e-89 333.2 215 73.5
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.9e-89 331.6 205 79.0
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.5e-88 330.5 285 62.8
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 3.2e-86 322.8 290 56.9
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 8.7e-84 314.7 216 74.1
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 6.3e-82 308.5 285 59.6
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.5e-67 260.8 163 77.3
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.4e-65 253.4 163 74.2
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 2.4e-65 253.4 375 40.3
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.6e-64 250.0 164 73.2
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 7.2e-62 241.9 172 70.9
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 4.8e-58 229.2 211 59.7
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 9.1e-57 224.9 167 69.5
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.0e-55 221.5 162 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 7.0e-49 198.7 252 46.0
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 6.1e-45 185.7 328 39.6
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.4e-44 184.5 123 69.9
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.0e-39 168.3 193 48.7
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.7e-34 149.8 111 67.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.3e-30 136.3 284 34.2
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.4e-28 131.3 384 31.2
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.4e-28 131.3 109 57.8
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 3.7e-26 123.2 256 33.6
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 9.2e-25 118.6 71 80.3
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.3e-22 109.0 206 35.9
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 3.1e-20 103.6 62 77.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.1e-17 93.2 57 75.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 2.7e-16 90.5 86 52.3
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 7.8e-16 89.0 63 65.1
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.6e-14 82.8 56 75.0
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 6.8e-12 75.9 72 55.6
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.6e-08 63.2 120 35.8
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 9.6e-06 55.5 46 54.3


User provided reference genes

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