Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 4.1e-125 451.4 231 100.0
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 2.0e-108 396.0 231 86.1
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 3.0e-104 382.1 231 84.8
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 4.4e-103 378.3 231 84.8
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 2.8e-102 375.6 231 84.0
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 4.8e-102 374.8 232 82.8
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 4.8e-102 374.8 232 83.2
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 8.2e-102 374.0 231 83.1
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 2.4e-101 372.5 231 82.7
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 5.3e-101 371.3 232 84.1
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 1.2e-100 370.2 231 82.3
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.6e-100 369.8 231 81.8
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 4.5e-100 368.2 231 81.8
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 8.5e-99 364.0 231 79.7
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 1.5e-98 363.2 233 81.5
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 1.4e-96 356.7 234 79.5
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 6.7e-96 354.4 231 79.7
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 8.8e-96 354.0 226 82.3
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 7.5e-95 350.9 231 80.5
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 1.3e-94 350.1 231 77.1
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 2.2e-94 349.4 231 81.0
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 3.7e-94 348.6 231 80.5
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 6.3e-94 347.8 231 80.5
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 1.1e-93 347.1 231 78.8
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 3.1e-93 345.5 226 79.6
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 5.3e-93 344.7 231 77.1
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 5.3e-93 344.7 231 79.2
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 1.2e-92 343.6 231 78.8
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 1.6e-92 343.2 234 76.1
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 5.9e-92 341.3 226 80.5
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 2.2e-91 339.3 226 77.9
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 2.2e-91 339.3 231 77.1
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 5.0e-91 338.2 228 78.1
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 5.0e-91 338.2 235 77.4
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 5.0e-91 338.2 231 76.2
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 6.5e-91 337.8 227 78.4
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 1.1e-90 337.0 226 78.8
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.1e-90 337.0 226 77.9
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 1.9e-90 336.3 233 76.8
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.9e-90 336.3 227 78.4
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.9e-90 336.3 227 78.0
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 1.9e-90 336.3 227 79.3
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 2.5e-90 335.9 234 76.5
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 4.2e-90 335.1 234 76.9
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 7.2e-90 334.3 228 77.2
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 9.4e-90 334.0 231 75.8
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 1.2e-89 333.6 231 74.9
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 1.2e-89 333.6 231 74.5
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 1.2e-89 333.6 231 74.5
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 1.2e-89 333.6 232 76.3
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 1.2e-89 333.6 232 77.6
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 1.6e-89 333.2 227 77.1
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 1.6e-89 333.2 233 76.8
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 2.1e-89 332.8 227 77.5
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 2.1e-89 332.8 227 77.5
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 2.7e-89 332.4 231 75.8
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 3.6e-89 332.0 227 77.5
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 1.0e-88 330.5 232 78.0
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 1.0e-88 330.5 232 77.2
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 1.0e-88 330.5 232 78.9
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 1.4e-88 330.1 231 74.5
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 1.4e-88 330.1 235 77.0
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 1.4e-88 330.1 228 79.4
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 3.0e-88 328.9 231 76.2
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 3.0e-88 328.9 231 76.6
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 4.0e-88 328.6 226 78.3
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 5.2e-88 328.2 236 75.0
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 5.2e-88 328.2 229 76.0
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 6.8e-88 327.8 232 75.0
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 3.4e-87 325.5 231 72.7
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 4.4e-87 325.1 236 74.6
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 9.8e-87 323.9 232 75.9
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 2.8e-86 322.4 231 74.0
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 3.7e-86 322.0 233 74.2
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 4.8e-86 321.6 238 73.1
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 1.1e-85 320.5 233 73.8
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.1e-85 320.5 228 77.2
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 5.4e-85 318.2 233 74.2
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 5.4e-85 318.2 233 73.4
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 9.1e-85 317.4 233 74.2
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 9.1e-85 317.4 233 74.2
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 9.1e-85 317.4 233 74.2
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 9.1e-85 317.4 233 74.2
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 1.2e-84 317.0 233 74.2
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 2.7e-84 315.8 233 73.8
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.7e-84 315.8 227 74.9
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 3.5e-84 315.5 235 74.5
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 3.5e-84 315.5 234 73.5
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 4.5e-84 315.1 236 73.7
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 5.9e-84 314.7 234 72.6
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 5.9e-84 314.7 234 72.6
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 5.9e-84 314.7 239 73.2
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 5.9e-84 314.7 233 73.0
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 7.7e-84 314.3 235 74.0
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 7.7e-84 314.3 235 74.0
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 2.9e-83 312.4 231 73.2
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 2.9e-83 312.4 231 73.2
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 2.9e-83 312.4 233 72.5
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.9e-83 312.4 228 75.9
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 2.9e-83 312.4 180 86.1
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 3.8e-83 312.0 228 72.8
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 5.0e-83 311.6 235 73.2
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 8.6e-83 310.8 234 71.8
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 1.1e-82 310.5 228 72.8
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 5.5e-82 308.1 232 72.8
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 7.2e-82 307.8 228 71.9
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.8e-81 305.8 228 73.2
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 3.6e-81 305.4 220 74.5
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 4.7e-81 305.1 179 84.9
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 6.1e-81 304.7 235 71.9
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 2.3e-80 302.8 228 70.6
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 3.0e-80 302.4 169 86.4
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 3.0e-80 302.4 169 86.4
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 2.6e-79 299.3 231 70.6
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 5.7e-79 298.1 235 68.9
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 1.3e-78 297.0 232 68.1
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.7e-78 296.6 228 69.3
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 4.9e-78 295.0 206 76.2
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 1.1e-77 293.9 156 92.3
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 1.7e-75 286.6 226 67.7
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 8.6e-75 284.3 212 70.8
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 8.0e-73 277.7 221 67.9
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 5.8e-71 271.6 228 65.8
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 5.2e-64 248.4 229 59.8
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 6.8e-64 248.1 227 58.6
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 1.2e-63 247.3 231 61.0
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 2.0e-63 246.5 174 69.0
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 3.4e-63 245.7 222 59.5
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.3e-62 243.8 203 63.5
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 5.6e-58 228.4 233 54.9
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 1.1e-56 224.2 226 54.4
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 4.6e-52 208.8 141 80.9
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 7.6e-47 191.4 205 51.7
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 1.9e-45 186.8 220 47.3
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 5.8e-39 165.2 152 66.4
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 2.7e-36 156.4 128 72.7
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 1.0e-35 154.5 175 49.1
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.5e-34 150.6 129 68.2
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 3.5e-28 129.4 72 75.0
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.5e-23 114.0 111 64.0
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 4.9e-22 109.0 57 84.2
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 3.2e-21 106.3 134 51.5
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 1.5e-10 70.9 44 84.1


User provided reference genes

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