Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 1.3e-174 616.3 316 100.0
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 2.5e-141 505.8 316 78.8
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 3.6e-140 501.9 318 79.6
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 3.0e-139 498.8 318 79.2
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 4.0e-139 498.4 318 79.2
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 8.8e-139 497.3 314 77.4
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 8.8e-139 497.3 316 77.5
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.2e-138 496.9 314 79.6
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 2.6e-138 495.7 316 75.9
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 5.7e-138 494.6 316 77.8
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 9.7e-138 493.8 316 78.2
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 4.8e-137 491.5 316 75.6
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 1.4e-136 490.0 316 77.8
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 1.8e-136 489.6 314 76.8
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 3.1e-136 488.8 316 76.3
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 5.3e-136 488.0 316 75.3
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 7.0e-136 487.6 316 76.3
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 7.0e-136 487.6 316 75.9
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 3.5e-135 485.3 316 75.3
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 3.5e-135 485.3 316 75.9
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 4.5e-135 485.0 316 75.0
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 4.5e-135 485.0 315 75.6
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 5.9e-135 484.6 316 75.3
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 1.0e-134 483.8 315 73.0
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.3e-134 483.4 316 73.4
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 2.9e-134 482.3 314 75.5
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 3.8e-134 481.9 316 75.3
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 8.5e-134 480.7 314 74.8
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 8.5e-134 480.7 313 74.4
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 1.1e-133 480.3 316 74.1
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 3.2e-133 478.8 312 74.7
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 5.5e-133 478.0 317 74.1
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 9.4e-133 477.2 311 76.8
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 2.7e-132 475.7 316 73.7
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 2.7e-132 475.7 293 78.8
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 4.7e-132 474.9 314 73.6
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 4.7e-132 474.9 314 73.2
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.8e-131 473.0 316 73.7
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 1.8e-131 473.0 315 71.4
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.8e-131 473.0 313 73.5
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 1.8e-131 473.0 314 74.2
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 1.8e-131 473.0 314 74.2
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 2.3e-131 472.6 314 72.9
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.3e-131 472.6 294 79.9
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 3.0e-131 472.2 314 73.9
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 4.0e-131 471.9 314 73.9
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 5.2e-131 471.5 313 73.2
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 5.2e-131 471.5 314 73.6
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 8.8e-131 470.7 316 74.1
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 8.8e-131 470.7 316 72.8
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 1.5e-130 469.9 316 72.2
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 2.6e-130 469.2 305 76.7
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 4.4e-130 468.4 316 72.8
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 5.7e-130 468.0 313 70.6
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 2.2e-129 466.1 315 73.7
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 2.8e-129 465.7 315 74.6
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 8.3e-129 464.2 314 71.7
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 8.3e-129 464.2 298 72.8
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.1e-128 463.8 341 70.1
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 4.1e-128 461.8 313 72.8
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 5.4e-128 461.5 313 69.6
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 2.7e-127 459.1 311 72.3
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 2.7e-127 459.1 314 71.3
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 6.6e-126 454.5 286 78.7
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.9e-125 453.0 312 70.8
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.9e-125 453.0 316 69.9
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.5e-125 452.6 312 70.5
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 3.3e-125 452.2 311 72.3
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 7.2e-125 451.1 317 72.6
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 9.5e-125 450.7 311 70.7
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 9.5e-125 450.7 308 73.4
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 1.2e-124 450.3 313 71.2
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 2.8e-124 449.1 313 71.9
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 3.6e-124 448.7 317 72.2
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 1.8e-123 446.4 313 71.6
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 4.0e-123 445.3 314 69.1
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 4.0e-123 445.3 314 69.4
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 1.5e-122 443.4 314 69.4
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 1.5e-122 443.4 314 70.4
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 2.0e-122 443.0 341 65.1
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 5.7e-122 441.4 329 68.4
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 5.7e-122 441.4 329 68.4
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 5.7e-122 441.4 329 68.4
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 1.3e-121 440.3 316 68.0
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 1.3e-121 440.3 316 68.0
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 3.7e-121 438.7 316 67.7
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 8.3e-121 437.6 316 67.4
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 8.3e-121 437.6 316 67.4
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 8.3e-121 437.6 329 67.5
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 1.1e-120 437.2 293 71.3
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.1e-120 437.2 314 70.4
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 2.4e-120 436.0 329 67.5
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 3.2e-120 435.6 313 69.3
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 5.4e-120 434.9 313 69.3
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 5.4e-120 434.9 312 67.9
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 9.2e-120 434.1 314 71.0
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 1.2e-119 433.7 316 66.5
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.0e-119 433.0 339 66.4
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 2.7e-119 432.6 313 68.7
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 1.0e-118 430.6 311 68.5
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 1.3e-118 430.3 320 65.9
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 2.3e-118 429.5 298 69.8
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 2.3e-118 429.5 298 68.5
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 2.9e-118 429.1 317 65.3
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 5.0e-118 428.3 298 69.5
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 6.6e-118 427.9 298 69.1
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 6.6e-118 427.9 298 69.1
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 2.5e-117 426.0 291 72.5
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 1.4e-115 420.2 316 65.5
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 6.8e-115 417.9 318 65.7
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 2.6e-114 416.0 316 64.6
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 6.4e-113 411.4 269 71.4
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 5.4e-112 408.3 300 66.0
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.7e-110 403.3 314 65.3
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.7e-110 403.3 315 65.4
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 3.9e-110 402.1 257 74.7
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.1e-109 400.6 329 64.1
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.1e-107 394.0 253 73.9
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 9.5e-101 370.9 314 62.7
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 4.0e-99 365.5 314 62.1
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.7e-95 352.8 231 78.4
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 7.8e-95 351.3 296 59.1
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 6.8e-91 338.2 234 70.1
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 8.4e-89 331.3 320 52.8
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.7e-87 326.2 222 72.5
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 7.8e-87 324.7 299 54.8
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.5e-82 310.5 314 52.5
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 2.4e-80 303.1 307 52.4
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 1.3e-78 297.4 276 56.9
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 1.7e-78 297.0 275 56.0
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 4.9e-73 278.9 309 48.5
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 5.6e-69 265.4 230 61.3
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 8.1e-68 261.5 285 50.5
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 3.8e-49 199.5 271 40.6
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 1.6e-47 194.1 173 63.0
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.0e-37 160.6 104 73.1
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 4.2e-32 142.9 94 72.3
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 4.7e-31 139.4 93 72.0
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 7.4e-29 132.1 90 70.0
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 4.2e-24 116.3 79 65.8
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 4.1e-19 99.8 116 50.0
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 2.0e-18 97.4 92 56.5
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 2.0e-18 97.4 92 56.5
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 3.0e-14 83.6 92 51.1
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 3.7e-12 76.6 99 48.5


User provided reference genes

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