Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 2.1e-158 562.4 296 100.0
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 2.1e-73 280.0 209 72.2
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.5e-73 279.3 203 71.9
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 3.9e-72 275.8 276 57.2
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 5.1e-72 275.4 227 68.3
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 1.9e-71 273.5 205 73.2
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 2.5e-71 273.1 203 71.9
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 4.3e-71 272.3 205 71.2
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 5.6e-71 271.9 225 66.7
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 1.3e-70 270.8 226 67.3
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 1.3e-70 270.8 209 67.9
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.6e-70 270.4 180 76.7
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 2.8e-70 269.6 222 68.9
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 2.4e-69 266.5 199 69.8
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 4.0e-69 265.8 219 66.7
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 5.3e-69 265.4 182 76.4
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 5.3e-69 265.4 222 68.0
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 5.3e-69 265.4 203 70.0
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.2e-68 264.2 246 58.5
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 2.0e-68 263.5 177 78.0
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 2.0e-68 263.5 292 56.5
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 4.5e-68 262.3 196 71.9
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 5.8e-68 261.9 289 57.1
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 1.0e-67 261.2 291 54.6
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 1.3e-67 260.8 277 56.7
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 3.8e-67 259.2 194 71.6
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 3.8e-67 259.2 203 69.0
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 4.9e-67 258.8 204 69.1
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 6.5e-67 258.5 286 57.3
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 6.5e-67 258.5 228 64.5
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 1.4e-66 257.3 182 73.6
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 1.4e-66 257.3 205 65.9
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 1.9e-66 256.9 223 61.9
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 1.9e-66 256.9 204 68.1
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 2.5e-66 256.5 205 65.4
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 2.5e-66 256.5 272 56.2
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 3.2e-66 256.1 220 64.1
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 7.1e-66 255.0 180 72.8
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 9.3e-66 254.6 178 73.6
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 1.2e-65 254.2 205 67.8
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 1.2e-65 254.2 178 74.2
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 2.7e-65 253.1 202 68.8
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.7e-65 253.1 286 55.9
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.7e-65 253.1 281 55.5
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 2.7e-65 253.1 281 55.5
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 4.6e-65 252.3 222 61.3
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 1.8e-64 250.4 182 72.0
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 3.0e-64 249.6 181 72.4
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 5.1e-64 248.8 207 66.7
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 2.5e-63 246.5 180 69.4
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 3.3e-63 246.1 294 53.4
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 3.3e-63 246.1 187 71.1
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 7.4e-63 245.0 200 66.5
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 2.1e-62 243.4 247 57.5
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 1.4e-61 240.7 182 70.3
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 2.4e-61 240.0 181 70.7
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 5.3e-61 238.8 183 71.0
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 6.9e-61 238.4 182 70.9
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 2.0e-60 236.9 188 68.1
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 3.4e-60 236.1 186 68.8
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 3.4e-60 236.1 186 68.8
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 3.4e-60 236.1 186 68.8
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 3.4e-60 236.1 183 69.4
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 4.5e-60 235.7 186 68.3
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 4.5e-60 235.7 207 64.7
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 1.7e-59 233.8 185 67.6
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.7e-59 233.8 171 70.8
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.9e-59 233.0 170 71.2
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 2.9e-59 233.0 156 77.6
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 3.8e-59 232.6 182 68.1
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 3.8e-59 232.6 167 68.3
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 6.5e-59 231.9 170 70.6
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 6.5e-59 231.9 210 60.0
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 2.5e-58 229.9 297 49.2
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 2.5e-58 229.9 163 73.0
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 1.2e-57 227.6 205 61.5
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 4.6e-57 225.7 272 50.7
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 4.3e-55 219.2 169 69.8
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 5.7e-55 218.8 174 66.1
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 4.8e-54 215.7 259 52.5
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 6.3e-54 215.3 158 70.3
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 1.8e-53 213.8 160 68.8
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 3.1e-53 213.0 147 75.5
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.1e-53 213.0 147 72.8
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 6.9e-53 211.8 147 72.8
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 7.7e-52 208.4 216 56.0
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 7.2e-50 201.8 205 56.1
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 6.7e-48 195.3 153 64.1
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 4.4e-47 192.6 220 51.4
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 1.7e-46 190.7 144 70.1
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 4.1e-45 186.0 224 52.7
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 2.0e-44 183.7 207 50.2
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.8e-43 179.5 170 58.8
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 3.2e-42 176.4 194 54.6
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 1.4e-40 171.0 257 47.1
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 5.2e-40 169.1 142 60.6
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.5e-39 167.5 122 68.0
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 7.7e-36 155.2 208 47.6
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 8.5e-35 151.8 167 50.9
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 8.2e-30 135.2 103 68.0
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 2.7e-28 130.2 126 57.9
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 4.5e-28 129.4 148 54.7
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 1.0e-27 128.3 88 71.6
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 8.5e-27 125.2 143 47.6
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 1.6e-25 120.9 148 53.4
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.0e-24 116.7 85 75.3
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 7.5e-23 112.1 77 70.1
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 1.3e-22 111.3 182 41.8
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.7e-22 110.9 85 65.9
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 4.8e-22 109.4 113 48.7
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 6.3e-22 109.0 184 40.8
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 3.5e-20 103.2 93 59.1
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 5.9e-20 102.4 66 74.2
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 7.2e-18 95.5 126 49.2
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.2e-15 88.2 79 57.0
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 1.5e-15 87.8 86 64.0
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 4.4e-15 86.3 66 69.7
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 2.4e-13 80.5 65 63.1
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 4.1e-13 79.7 55 72.7
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 5.9e-12 75.9 43 81.4
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 1.0e-11 75.1 105 46.7
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 4.7e-09 66.2 53 62.3
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 3.0e-08 63.5 81 45.7
CANSAT25G0241 Cannabis sativa HOM05D002102 ORTHO05D008242 6.4e-06 55.8 59 52.5


User provided reference genes

Program Settings