Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 4.4e-102 374.8 211 100.0
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 3.1e-71 272.3 214 72.9
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.2e-70 270.4 212 72.2
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 7.6e-70 267.7 210 71.9
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.3e-69 266.9 211 70.1
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 4.2e-68 261.9 212 69.3
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 7.1e-68 261.2 212 69.8
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.6e-67 260.0 214 70.1
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 6.0e-67 258.1 210 70.5
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.0e-66 257.3 211 68.7
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 1.7e-66 256.5 212 71.7
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 5.1e-66 255.0 213 69.5
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 6.6e-66 254.6 216 67.6
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 8.7e-66 254.2 211 69.7
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.1e-65 253.8 215 70.2
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 1.9e-65 253.1 213 70.0
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.8e-64 249.2 216 68.1
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 2.8e-64 249.2 217 68.7
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 4.8e-64 248.4 214 67.3
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.4e-63 246.9 223 68.6
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.1e-63 245.7 226 68.1
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 4.0e-63 245.4 213 70.0
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 6.9e-63 244.6 214 67.8
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.2e-62 243.8 232 61.6
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.0e-62 243.0 212 67.0
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 2.0e-62 243.0 193 71.0
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 2.6e-62 242.7 212 68.9
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.4e-62 242.3 221 66.1
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.4e-62 242.3 221 66.1
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 4.5e-62 241.9 211 68.2
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 9.9e-62 240.7 212 67.0
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 3.8e-61 238.8 215 65.6
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 3.8e-61 238.8 214 69.2
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 4.9e-61 238.4 216 66.7
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 4.9e-61 238.4 212 67.5
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 4.9e-61 238.4 224 65.6
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.4e-61 238.0 232 62.9
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 6.4e-61 238.0 229 64.2
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 6.4e-61 238.0 232 62.9
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.4e-60 236.9 229 64.2
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 1.6e-59 233.4 231 62.3
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.6e-59 233.4 211 63.5
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.6e-59 233.4 211 63.5
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.7e-59 232.6 211 64.5
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 4.6e-59 231.9 212 67.9
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.8e-58 229.9 229 63.8
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 2.3e-58 229.6 215 65.1
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.3e-58 229.6 233 60.1
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.0e-58 229.2 232 61.6
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 5.1e-58 228.4 209 67.5
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 6.7e-58 228.0 212 63.2
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.5e-57 226.9 226 62.4
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 4.3e-57 225.3 235 60.0
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 4.3e-57 225.3 220 64.1
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 5.6e-57 224.9 214 66.4
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 7.4e-57 224.6 211 61.6
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 9.6e-57 224.2 211 65.9
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 3.7e-56 222.2 211 63.5
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 6.2e-56 221.5 213 65.3
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.4e-55 220.3 221 64.7
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.4e-55 220.3 200 66.5
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 6.9e-55 218.0 207 64.7
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.2e-54 217.2 236 58.9
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.2e-54 217.2 236 58.9
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.5e-54 216.9 218 61.5
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 3.4e-54 215.7 221 61.5
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 5.8e-54 214.9 224 60.7
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 7.6e-54 214.5 220 60.5
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 1.7e-53 213.4 126 85.7
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.2e-53 213.0 214 63.1
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 3.8e-53 212.2 212 61.8
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 4.9e-53 211.8 213 63.4
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 6.5e-53 211.5 244 54.1
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.1e-52 210.7 210 61.9
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.9e-52 209.9 211 62.6
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 2.5e-52 209.5 128 82.8
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 3.2e-52 209.1 127 83.5
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 3.2e-52 209.1 218 61.0
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 5.5e-52 208.4 220 59.5
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 9.3e-52 207.6 238 54.2
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.2e-51 207.2 224 60.3
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.6e-51 206.8 126 80.2
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 2.7e-51 206.1 126 82.5
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 3.5e-51 205.7 255 52.9
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 7.9e-51 204.5 211 64.0
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 7.9e-51 204.5 128 82.0
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.3e-50 203.8 244 52.0
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.3e-50 203.8 241 52.3
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.3e-50 203.8 208 61.5
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 3.9e-50 202.2 122 83.6
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 3.9e-50 202.2 210 62.9
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 3.3e-49 199.1 211 61.6
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 9.6e-49 197.6 252 52.8
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 6.2e-48 194.9 199 59.8
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.4e-47 193.7 261 51.7
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 3.1e-47 192.6 126 77.0
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 5.3e-47 191.8 127 76.4
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 6.9e-47 191.4 168 66.1
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 4.5e-46 188.7 127 74.8
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 5.8e-46 188.3 258 50.4
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 7.6e-46 188.0 225 55.6
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.0e-45 187.6 191 61.8
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.7e-45 186.8 218 54.6
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 1.7e-45 186.8 218 55.0
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 3.8e-45 185.7 127 73.2
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 6.5e-45 184.9 125 73.6
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.1e-44 184.1 211 55.0
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.1e-44 184.1 218 55.0
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.9e-44 183.3 125 72.8
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 3.2e-44 182.6 129 76.7
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 4.2e-44 182.2 217 53.5
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.6e-43 180.3 105 88.6
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.3e-42 177.2 211 52.1
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.8e-42 176.8 212 54.7
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 2.3e-42 176.4 212 54.2
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.9e-42 175.6 106 84.9
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.5e-41 172.9 204 52.9
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 3.7e-40 169.1 203 56.2
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 6.3e-40 168.3 212 50.0
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 5.3e-39 165.2 225 48.4
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 9.0e-39 164.5 170 62.4
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.0e-38 163.3 145 62.1
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.7e-37 160.2 95 83.2
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 6.5e-37 158.3 214 48.6
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 2.5e-36 156.4 101 79.2
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 2.5e-36 156.4 171 59.6
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 5.5e-36 155.2 195 54.9
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 1.6e-35 153.7 196 52.0
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 1.6e-35 153.7 196 52.0
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 7.9e-35 151.4 126 61.9
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 7.9e-35 151.4 211 48.8
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-34 150.2 128 63.3
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 5.1e-34 148.7 129 64.3
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.5e-33 147.1 213 46.5
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-33 147.1 137 63.5
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 5.7e-33 145.2 131 61.8
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.3e-32 144.1 109 71.6
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 3.1e-31 139.4 167 49.7
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 3.1e-31 139.4 214 43.9
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.5e-30 137.1 135 60.7
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 8.5e-29 131.3 87 80.5
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 4.2e-28 129.0 103 62.1
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.2e-27 127.5 168 53.6
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 1.6e-27 127.1 148 60.8
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 6.1e-27 125.2 130 54.6
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-26 123.6 221 45.7
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 5.1e-26 122.1 223 43.0
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.7e-22 108.2 82 69.5
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 2.5e-20 103.2 79 69.6
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 2.8e-16 89.7 170 42.4
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 8.2e-16 88.2 108 54.6
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 2.4e-15 86.7 116 54.3
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 4.5e-14 82.4 108 54.6
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 5.9e-14 82.0 48 81.2
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.9e-12 77.0 113 42.5
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 4.2e-12 75.9 65 60.0
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.0e-10 71.2 120 36.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 7.5e-09 65.1 94 44.7
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 1.3e-08 64.3 147 40.1
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 4.8e-08 62.4 41 68.3
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 3.1e-07 59.7 37 73.0
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-06 57.8 47 63.8


User provided reference genes

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