Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 2.0e-283 978.4 483 100.0
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 2.5e-193 679.1 485 70.1
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 9.5e-193 677.2 485 69.5
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 9.8e-190 667.2 486 70.2
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 5.4e-188 661.4 485 68.7
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 5.4e-188 661.4 494 69.2
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 7.0e-188 661.0 487 67.4
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 7.0e-188 661.0 485 68.9
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 6.0e-187 657.9 485 69.3
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 7.8e-187 657.5 487 68.8
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.3e-186 656.0 494 69.2
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.3e-186 656.0 435 72.6
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 2.3e-186 656.0 490 69.6
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 3.9e-186 655.2 444 74.3
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 8.6e-186 654.1 435 72.6
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 2.5e-185 652.5 481 69.9
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 5.6e-185 651.4 438 71.5
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 1.1e-183 647.1 485 68.5
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 1.1e-183 647.1 376 83.5
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 1.8e-183 646.4 444 73.0
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 3.1e-183 645.6 444 72.3
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 3.1e-183 645.6 486 67.9
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 8.9e-183 644.0 486 67.7
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.3e-181 640.2 474 68.8
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 2.2e-181 639.4 488 67.8
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 3.7e-181 638.6 376 83.0
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 4.9e-181 638.3 492 66.3
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 4.9e-181 638.3 435 72.0
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.9e-180 636.3 498 65.3
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.9e-180 636.3 475 68.6
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 2.4e-180 636.0 512 64.1
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 5.4e-180 634.8 383 80.7
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 9.2e-180 634.0 475 67.8
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 2.7e-179 632.5 498 64.7
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 7.8e-179 630.9 450 70.4
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 7.8e-179 630.9 450 70.4
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.7e-178 629.8 443 72.5
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.7e-178 629.8 443 69.5
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 3.9e-178 628.6 383 80.4
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 8.6e-178 627.5 489 65.4
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 1.1e-177 627.1 471 69.0
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 5.6e-177 624.8 381 77.4
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 7.3e-177 624.4 381 79.8
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 1.6e-176 623.2 367 81.7
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 4.7e-176 621.7 367 81.5
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 1.8e-175 619.8 489 65.0
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 2.4e-175 619.4 421 72.7
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 3.1e-175 619.0 367 80.7
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 4.0e-175 618.6 367 80.4
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 5.2e-175 618.2 367 80.7
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.5e-174 616.7 370 79.5
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 2.0e-174 616.3 433 70.7
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 2.6e-174 615.9 367 80.4
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 4.4e-174 615.1 370 79.2
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 9.9e-174 614.0 446 69.7
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 1.3e-173 613.6 367 79.8
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 1.7e-173 613.2 368 80.2
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 3.8e-173 612.1 375 78.9
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 3.8e-173 612.1 367 80.4
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 9.2e-172 607.4 452 66.6
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 9.2e-172 607.4 489 65.2
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.6e-171 606.7 487 65.9
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 1.6e-171 606.7 492 63.8
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 2.7e-171 605.9 500 62.8
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 2.7e-171 605.9 485 64.1
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 7.8e-171 604.4 398 73.6
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 3.9e-170 602.1 391 74.9
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 3.9e-170 602.1 384 75.0
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 5.1e-170 601.7 391 74.9
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 3.3e-169 599.0 489 61.8
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 3.3e-169 599.0 370 78.1
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 2.1e-168 596.3 368 78.8
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 4.7e-168 595.1 394 73.4
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 4.7e-168 595.1 450 67.3
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 3.4e-166 589.0 403 71.5
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 4.4e-166 588.6 376 75.0
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 5.8e-166 588.2 370 75.7
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 7.6e-166 587.8 378 75.4
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 7.6e-166 587.8 519 60.5
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.2e-165 586.3 479 63.0
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 3.8e-165 585.5 368 77.7
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 3.8e-165 585.5 484 62.2
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 8.4e-165 584.3 383 73.6
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 5.1e-162 575.1 367 76.6
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 5.1e-162 575.1 386 72.0
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 4.8e-160 568.5 449 64.1
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.0e-158 563.1 487 59.5
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.7e-157 560.1 487 59.3
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.4e-156 557.0 376 70.7
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 4.2e-156 555.4 573 53.9
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 6.7e-154 548.1 378 71.4
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 1.5e-153 547.0 302 83.4
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 1.5e-153 547.0 303 83.2
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 1.9e-153 546.6 405 66.9
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 5.6e-153 545.0 303 82.8
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 4.8e-152 542.0 456 61.2
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 6.9e-151 538.1 470 61.5
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 1.1e-148 530.8 286 87.4
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.4e-148 530.4 406 65.5
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 7.1e-140 501.5 363 67.5
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 3.4e-134 482.6 379 62.5
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.1e-127 459.1 335 65.1
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 2.0e-126 456.8 386 59.3
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 1.0e-122 444.5 357 58.8
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 6.3e-112 408.7 247 76.1
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 2.4e-111 406.8 292 63.7
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 1.9e-108 397.1 244 76.6
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 7.7e-102 375.2 302 64.2
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 2.3e-98 363.6 374 54.5
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 4.8e-96 355.9 196 81.6
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.6e-83 313.2 235 63.8
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.4e-71 274.6 204 58.3
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.9e-71 274.2 204 58.3
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 2.1e-70 270.8 316 44.9
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.6e-70 269.6 204 57.8
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 5.1e-69 266.2 204 55.9
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 5.6e-68 262.7 303 43.9
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.6e-54 218.0 210 53.3
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 3.6e-43 180.3 141 67.4
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.8e-34 151.4 98 64.3
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 4.5e-17 93.6 97 59.8
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 5.1e-13 80.1 93 54.8
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 1.1e-12 79.0 359 22.0
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 2.5e-12 77.8 270 23.0
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 7.4e-12 76.3 308 22.7
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 9.7e-12 75.9 344 23.3
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.7e-11 75.1 274 23.4
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.8e-11 74.3 280 22.9
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 3.7e-11 73.9 312 24.0
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 6.3e-11 73.2 299 21.7
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 6.3e-11 73.2 299 21.7
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 6.3e-11 73.2 293 21.8
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.4e-10 72.0 346 22.3
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.4e-10 71.2 299 21.4
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 5.3e-10 70.1 299 21.4
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 6.9e-10 69.7 307 23.5
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 6.9e-10 69.7 296 22.0
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 9.1e-10 69.3 311 21.2
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 1.2e-09 68.9 303 22.1
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.2e-09 68.9 301 21.6
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 2.6e-09 67.8 328 22.6
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 2.6e-09 67.8 275 22.9
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 3.4e-09 67.4 296 23.0
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.0e-08 65.9 339 20.4
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 1.0e-08 65.9 340 21.8
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.3e-08 65.5 143 25.9
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 2.2e-08 64.7 124 36.3
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 6.5e-08 63.2 162 21.6
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.4e-07 62.0 291 22.7


User provided reference genes

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