Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.6e-89 332.0 169 100.0
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.4e-82 309.7 169 90.5
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.4e-82 309.7 169 90.5
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.8e-82 309.3 169 91.1
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 4.1e-82 308.1 168 91.7
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 2.6e-81 305.4 169 89.3
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 7.7e-81 303.9 169 88.2
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.0e-80 303.5 168 89.3
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 1.0e-80 303.5 167 89.2
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.0e-80 303.5 169 89.9
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.3e-80 303.1 169 89.3
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 2.2e-80 302.4 169 88.2
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.9e-80 302.0 168 89.3
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 3.8e-80 301.6 169 88.2
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 3.8e-80 301.6 169 88.2
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.8e-80 301.6 169 87.6
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 3.8e-80 301.6 169 87.6
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 3.8e-80 301.6 168 89.3
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 5.0e-80 301.2 169 88.2
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 88.8
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 87.6
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 88.8
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.1e-79 300.1 169 89.3
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 1.1e-79 300.1 169 87.6
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.4e-79 299.7 167 86.2
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.4e-79 299.7 169 87.6
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.9e-79 299.3 169 88.2
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.9e-79 299.3 169 88.8
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.5e-79 298.9 169 87.6
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 87.0
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-79 298.5 166 87.3
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 4.2e-79 298.1 167 86.8
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 4.2e-79 298.1 169 87.6
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 9.4e-79 297.0 169 88.2
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 1.6e-78 296.2 186 81.7
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.7e-78 295.4 168 86.9
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.7e-78 295.4 168 86.9
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.0e-77 293.5 166 87.3
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-77 293.5 166 87.3
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-77 293.5 166 87.3
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.0e-77 293.5 166 87.3
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.8e-77 292.7 166 87.3
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.8e-77 292.7 166 86.1
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.3e-77 292.4 169 87.0
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 3.0e-77 292.0 169 84.0
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 3.9e-77 291.6 169 86.4
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 3.9e-77 291.6 169 85.2
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 3.9e-77 291.6 167 84.4
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.9e-77 291.6 167 86.8
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 5.1e-77 291.2 169 84.6
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 5.1e-77 291.2 182 81.3
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 5.1e-77 291.2 169 85.8
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 86.4
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 8.8e-77 290.4 166 85.5
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.5e-76 289.7 169 85.8
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.5e-76 289.7 169 84.0
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 2.0e-76 289.3 169 85.8
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 85.2
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 86.4
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 2.5e-76 288.9 207 72.9
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 85.2
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 3.3e-76 288.5 169 84.0
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 5.7e-76 287.7 169 84.6
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 7.4e-76 287.3 169 85.2
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.7e-75 286.2 169 84.0
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.2e-75 285.8 169 85.8
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 4.8e-75 284.6 169 83.4
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 4.8e-75 284.6 167 85.0
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 4.8e-75 284.6 192 76.6
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 8.2e-75 283.9 169 83.4
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 8.2e-75 283.9 169 83.4
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 8.2e-75 283.9 169 83.4
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.1e-74 283.5 169 82.8
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 82.8
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.3e-74 281.2 183 78.7
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 82.2
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.9e-74 280.8 183 78.7
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.9e-74 280.8 183 78.7
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 2.0e-73 279.3 226 67.7
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.6e-73 278.9 169 81.7
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 7.7e-73 277.3 167 79.0
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.0e-72 276.9 167 82.0
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.7e-72 276.2 169 81.7
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.9e-72 275.4 197 74.1
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 8.5e-72 273.9 169 80.5
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 8.5e-72 273.9 169 81.1
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.1e-71 273.5 169 79.3
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.4e-71 273.1 149 89.3
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.4e-71 273.1 169 78.1
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 1.4e-71 273.1 149 89.3
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.5e-71 272.3 158 86.1
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 4.2e-71 271.6 149 87.2
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.2e-71 271.6 214 68.2
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 4.2e-71 271.6 149 87.9
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 9.4e-71 270.4 169 81.1
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 9.4e-71 270.4 149 86.6
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 9.4e-71 270.4 169 79.9
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.1e-70 269.2 147 88.4
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 2.1e-70 269.2 169 80.5
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-70 269.2 169 77.5
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.1e-70 269.2 158 85.4
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.7e-70 268.9 168 81.5
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.4e-69 266.5 145 89.7
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.9e-69 265.0 153 87.6
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 3.9e-69 265.0 148 88.5
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 6.7e-69 264.2 153 85.0
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 6.7e-69 264.2 167 76.6
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 2.0e-68 262.7 166 78.9
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 7.4e-68 260.8 167 74.3
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.3e-67 260.0 143 87.4
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 4.8e-67 258.1 168 76.8
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 4.1e-66 255.0 150 82.7
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 7.0e-66 254.2 239 60.3
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 4.5e-65 251.5 177 75.1
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 3.8e-64 248.4 167 75.4
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 3.6e-62 241.9 149 79.2
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 2.3e-61 239.2 156 79.5
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 3.9e-61 238.4 170 75.9
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 7.4e-60 234.2 149 77.2
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 9.7e-60 233.8 127 94.5
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.3e-59 233.4 124 88.7
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.8e-58 229.6 169 74.6
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 3.1e-58 228.8 149 77.2
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 3.1e-58 228.8 126 84.9
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 3.5e-57 225.3 152 75.7
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 3.5e-57 225.3 124 91.1
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 1.7e-56 223.0 191 60.2
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.9e-55 219.5 157 68.2
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-55 218.8 121 89.3
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 4.2e-55 218.4 121 88.4
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 4.2e-55 218.4 121 88.4
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 5.5e-55 218.0 123 82.9
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 9.4e-55 217.2 121 87.6
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 9.4e-55 217.2 166 69.3
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 2.7e-54 215.7 123 87.0
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 4.7e-54 214.9 168 68.5
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 6.1e-54 214.5 124 89.5
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.4e-53 213.4 131 80.9
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 4.4e-52 208.4 149 72.5
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 4.1e-50 201.8 148 73.6
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.5e-49 198.7 136 69.9
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.8e-48 195.3 141 72.3
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.7e-43 179.9 134 73.9
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 5.9e-41 171.4 90 91.1
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.8e-38 162.5 90 82.2
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.1e-38 161.4 94 89.4
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 7.0e-34 147.9 83 89.2
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.3e-32 143.7 112 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.0e-28 129.8 94 69.1
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.0e-28 129.8 99 66.7
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.7e-27 126.7 73 89.0
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 4.1e-26 122.1 103 64.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.4e-26 121.7 82 70.7
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.8e-21 106.7 74 67.6
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.0e-21 105.5 75 70.7
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.4e-20 102.4 75 66.7
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.9e-18 96.7 64 70.3
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.4e-18 96.3 161 39.1
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 5.4e-18 95.1 130 42.3
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-17 93.2 65 70.8
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 4.3e-15 85.5 49 87.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 4.3e-15 85.5 49 87.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-13 80.9 108 50.9
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 3.4e-12 75.9 165 35.2
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.2e-10 69.3 44 70.5
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.9e-08 62.4 37 75.7


User provided reference genes

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