Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 1.2e-269 932.6 463 100.0
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 9.9e-147 524.2 423 63.1
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 1.7e-146 523.5 358 70.7
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 7.8e-144 514.6 380 65.0
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 5.6e-142 508.4 383 64.2
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 2.1e-141 506.5 355 66.8
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 2.8e-141 506.1 478 56.1
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 4.0e-140 502.3 469 57.4
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 6.8e-140 501.5 468 55.8
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 3.4e-139 499.2 470 55.3
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 5.8e-139 498.4 360 65.8
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 2.9e-138 496.1 342 64.9
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 2.4e-137 493.0 354 66.4
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.4e-137 493.0 345 65.2
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 3.2e-137 492.7 345 65.2
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 4.2e-137 492.3 345 64.6
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 2.1e-136 490.0 360 66.4
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.0e-135 487.6 368 62.0
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 3.9e-135 485.7 334 69.8
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 3.9e-135 485.7 388 62.4
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 4.3e-134 482.3 449 54.3
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 9.6e-134 481.1 465 54.8
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 1.1e-132 477.6 359 64.1
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 2.4e-132 476.5 346 63.9
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.1e-132 476.1 349 64.5
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 5.3e-132 475.3 342 63.2
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 9.0e-132 474.6 354 63.3
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 9.0e-132 474.6 349 66.2
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.5e-131 473.8 354 63.0
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 2.0e-131 473.4 426 55.2
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 2.6e-131 473.0 462 54.3
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 3.4e-131 472.6 364 63.7
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 2.2e-130 469.9 349 61.0
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 1.1e-129 467.6 361 61.2
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 2.1e-128 463.4 359 60.4
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.0e-127 461.1 369 61.5
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 1.0e-127 461.1 359 60.7
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 1.3e-127 460.7 341 63.0
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 2.3e-127 459.9 380 58.4
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 2.3e-127 459.9 307 69.4
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 6.6e-127 458.4 359 62.4
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 8.7e-127 458.0 308 65.6
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 1.1e-126 457.6 377 58.9
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.9e-126 456.8 434 53.2
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 5.6e-126 455.3 352 61.9
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 5.6e-126 455.3 355 62.0
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 7.4e-126 454.9 353 62.0
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.3e-125 454.1 367 59.9
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 3.6e-125 452.6 392 58.7
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 6.2e-125 451.8 382 57.9
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 2.4e-124 449.9 364 59.1
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 4.0e-124 449.1 363 62.3
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 1.2e-123 447.6 448 55.6
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.0e-123 446.8 349 59.9
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.6e-123 446.4 338 64.2
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 4.5e-123 445.7 435 52.9
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 5.8e-123 445.3 410 53.2
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 7.6e-123 444.9 378 56.6
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 7.6e-123 444.9 365 60.0
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 9.9e-123 444.5 359 58.8
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.3e-122 444.1 337 62.0
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 2.9e-122 443.0 359 57.9
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 3.8e-122 442.6 365 58.4
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 6.4e-122 441.8 372 59.7
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 1.9e-121 440.3 314 64.3
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 2.4e-121 439.9 457 51.0
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 3.2e-121 439.5 310 66.1
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 1.2e-120 437.6 367 58.6
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 1.6e-120 437.2 352 58.5
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 7.9e-120 434.9 323 62.5
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.8e-119 433.7 360 59.2
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 3.0e-119 433.0 351 61.0
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 5.1e-119 432.2 373 58.7
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 6.7e-119 431.8 373 58.7
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 8.7e-119 431.4 381 55.6
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 1.9e-118 430.3 381 55.4
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 3.3e-118 429.5 333 61.9
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 4.3e-118 429.1 349 56.4
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 5.6e-118 428.7 437 51.9
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 6.2e-117 425.2 347 58.5
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 8.1e-117 424.9 335 60.9
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.8e-116 423.7 481 47.8
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 6.9e-116 421.8 380 57.1
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 9.0e-116 421.4 371 55.8
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 1.2e-115 421.0 342 56.4
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 1.5e-115 420.6 342 56.4
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 3.4e-115 419.5 430 53.0
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 1.0e-114 417.9 362 58.3
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 1.7e-114 417.2 367 54.8
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 4.2e-113 412.5 348 57.8
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.2e-112 411.0 446 50.4
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 2.7e-112 409.8 356 57.3
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 1.3e-111 407.5 407 52.6
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.8e-111 407.1 360 52.8
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 2.3e-111 406.8 457 47.3
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 3.0e-111 406.4 357 57.7
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 5.1e-111 405.6 457 48.6
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 5.1e-111 405.6 342 57.0
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 1.1e-110 404.4 248 75.8
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 1.1e-110 404.4 342 57.3
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 4.3e-110 402.5 357 55.7
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 5.7e-110 402.1 461 48.2
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 5.7e-110 402.1 310 60.6
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 7.4e-110 401.7 461 48.2
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 7.4e-110 401.7 310 60.0
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 1.3e-109 401.0 425 49.2
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 2.8e-109 399.8 350 55.7
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 6.3e-109 398.7 357 54.9
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 8.2e-109 398.3 375 55.5
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 2.4e-108 396.7 359 56.8
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 1.8e-103 380.6 360 51.7
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 9.7e-102 374.8 265 65.3
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 2.2e-101 373.6 340 52.6
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 2.2e-101 373.6 431 46.2
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 2.8e-101 373.2 517 42.0
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 8.2e-101 371.7 423 46.8
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.0e-99 367.1 354 52.5
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 3.4e-99 366.3 365 51.8
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 3.4e-99 366.3 339 52.5
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.3e-98 364.4 354 52.3
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 1.7e-98 364.0 461 44.5
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 1.7e-98 364.0 463 44.9
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 2.9e-98 363.2 384 49.7
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 1.4e-97 360.9 368 50.5
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.4e-97 360.9 354 52.0
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 3.6e-96 356.3 288 56.2
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.6e-96 356.3 377 51.5
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 1.4e-95 354.4 339 51.9
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 3.7e-93 346.3 466 42.3
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 3.1e-92 343.2 466 42.3
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.1e-92 342.8 268 60.8
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 6.9e-92 342.0 271 60.5
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 1.5e-91 340.9 422 45.0
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 7.7e-91 338.6 446 42.6
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 2.2e-90 337.0 451 43.0
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 3.2e-89 333.2 456 42.5
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 6.7e-87 325.5 364 48.1
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 6.7e-87 325.5 349 47.0
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 5.9e-83 312.4 354 45.2
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 6.7e-79 298.9 334 45.2
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 8.8e-79 298.5 331 42.6
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 2.7e-72 276.9 268 51.9
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 9.8e-70 268.5 319 42.3
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 1.7e-66 257.7 322 40.7
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 5.0e-66 256.1 238 55.9
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 1.9e-65 254.2 290 44.5
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.2e-65 253.1 318 40.3
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.7e-64 249.6 318 39.9
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.3e-63 247.3 318 39.9
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 4.0e-63 246.5 360 36.9
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 6.8e-63 245.7 286 39.5
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 2.4e-60 237.3 314 36.9
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 2.7e-59 233.8 328 40.2
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 3.3e-57 226.9 291 39.2
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 4.3e-57 226.5 275 38.9
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.7e-53 214.5 191 50.8
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.2e-53 214.2 303 36.0
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.2e-53 214.2 303 36.0
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 5.6e-49 199.5 135 66.7
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.4e-47 194.9 198 47.5
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 1.6e-43 181.4 241 43.2
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.9e-41 174.5 138 59.4
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 5.6e-41 172.9 153 52.9
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.2e-40 171.8 118 66.1
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.1e-36 158.7 162 48.1
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.4e-36 157.5 164 49.4
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.6e-35 154.8 109 64.2
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 9.9e-30 135.6 258 32.6
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 2.1e-27 127.9 89 60.7
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 4.6e-27 126.7 140 47.9
MCO14G045 Micromonas commoda HOM05D000861 ORTHO05D004749 1.8e-23 114.8 332 26.8
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 3.9e-18 97.1 87 55.2
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 5.6e-17 93.2 71 54.9
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 5.3e-15 86.7 60 63.3
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.9e-12 78.2 103 44.7


User provided reference genes

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