Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 2.5e-289 998.0 487 100.0
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 6.4e-221 770.8 483 75.4
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 5.6e-209 731.1 486 72.6
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 4.4e-206 721.5 485 71.1
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 8.4e-205 717.2 461 73.3
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 9.2e-204 713.8 483 71.0
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 1.2e-203 713.4 485 70.3
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 2.1e-203 712.6 491 70.5
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 4.6e-203 711.4 485 69.7
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 6.0e-203 711.1 482 71.6
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 3.0e-202 708.8 399 81.7
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 3.9e-202 708.4 463 72.1
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 1.5e-201 706.4 474 71.3
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 5.6e-201 704.5 462 72.5
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 5.6e-201 704.5 487 69.4
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 2.8e-200 702.2 466 71.9
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 3.6e-200 701.8 485 68.9
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 4.7e-200 701.4 472 69.9
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 4.7e-200 701.4 483 71.4
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 5.2e-199 698.0 482 70.1
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 1.5e-198 696.4 485 69.3
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 3.4e-198 695.3 464 72.0
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 4.4e-198 694.9 467 70.9
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 5.8e-198 694.5 485 69.5
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 9.9e-198 693.7 467 70.7
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 1.3e-197 693.3 475 69.5
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 1.7e-197 693.0 487 69.4
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 2.2e-197 692.6 475 69.5
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 3.8e-197 691.8 463 70.2
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 6.4e-197 691.0 484 69.6
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 8.4e-197 690.6 467 69.8
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 8.4e-197 690.6 485 69.1
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.9e-196 689.5 502 68.5
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 5.4e-196 688.0 474 69.0
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 6.6e-194 681.0 484 68.4
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.5e-193 679.9 478 68.4
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 1.3e-192 676.8 432 71.8
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 1.3e-192 676.8 462 69.3
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 1.6e-192 676.4 423 73.5
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 2.1e-192 676.0 489 66.5
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 1.1e-191 673.7 422 74.6
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 2.4e-191 672.5 396 77.5
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 6.9e-191 671.0 396 76.8
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 2.6e-190 669.1 489 65.6
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 3.4e-190 668.7 432 71.3
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 3.4e-190 668.7 435 71.5
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 7.6e-190 667.5 439 70.4
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 7.6e-190 667.5 414 72.9
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 1.3e-189 666.8 482 66.8
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.9e-189 665.6 480 67.1
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 2.4e-188 662.5 486 65.2
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.2e-188 662.1 486 65.4
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 3.5e-187 658.7 434 70.3
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 1.0e-186 657.1 472 66.5
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 2.3e-186 656.0 438 71.5
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.9e-186 655.2 421 71.7
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 8.7e-186 654.1 414 71.7
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 1.5e-185 653.3 478 64.2
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 5.6e-185 651.4 468 66.9
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 1.3e-184 650.2 475 65.9
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 2.8e-184 649.0 472 66.5
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 3.6e-184 648.7 471 66.7
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 3.6e-184 648.7 440 68.2
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 3.6e-184 648.7 489 66.3
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 8.1e-184 647.5 435 70.8
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 1.4e-183 646.7 469 66.3
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 4.0e-183 645.2 471 66.2
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 4.0e-183 645.2 471 66.2
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 6.9e-183 644.4 467 66.8
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 6.9e-183 644.4 416 71.4
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 9.0e-183 644.0 479 64.5
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 1.2e-182 643.7 465 66.7
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 1.5e-182 643.3 482 64.9
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 1.5e-182 643.3 416 71.2
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 2.6e-182 642.5 471 66.0
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 7.6e-182 641.0 451 65.4
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 3.8e-181 638.6 439 66.5
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 1.9e-180 636.3 486 64.0
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 5.5e-180 634.8 400 72.5
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 9.3e-180 634.0 475 64.2
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 1.8e-178 629.8 471 64.3
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 3.9e-178 628.6 394 73.4
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 3.9e-178 628.6 445 66.3
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 8.7e-178 627.5 475 64.0
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 7.4e-177 624.4 471 64.3
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 3.7e-176 622.1 395 70.6
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 5.5e-172 608.2 358 79.6
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 5.5e-172 608.2 481 63.0
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.7e-171 605.9 400 69.5
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.8e-170 603.2 385 73.2
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 2.3e-170 602.8 421 69.1
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 9.6e-169 597.4 384 69.8
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.2e-166 590.5 419 65.6
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 7.6e-166 587.8 451 62.3
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.0e-165 587.4 355 76.6
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.3e-165 587.0 409 69.7
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 2.3e-162 576.2 421 62.7
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 5.7e-161 571.6 413 65.1
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 2.8e-160 569.3 357 72.3
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 6.3e-160 568.2 490 60.0
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.9e-156 556.6 361 73.1
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 3.9e-154 548.9 353 68.6
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.4e-151 540.4 397 64.7
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 9.1e-151 537.7 421 61.3
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 5.0e-149 531.9 397 66.5
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 3.0e-130 469.5 450 54.7
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 3.4e-129 466.1 402 54.0
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.1e-127 461.1 404 54.7
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.6e-126 457.2 324 72.2
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 3.5e-126 456.1 396 54.5
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 6.1e-123 445.3 404 52.2
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 5.9e-118 428.7 251 79.7
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 2.3e-114 416.8 435 46.9
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 8.3e-104 381.7 300 65.3
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.6e-91 340.9 243 63.0
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 2.6e-73 280.4 185 63.2
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 5.8e-73 279.3 161 75.8
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 1.2e-70 271.6 234 60.3
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.0e-69 268.5 213 63.4
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 5.1e-69 266.2 225 56.4
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.5e-60 238.0 162 66.0
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 3.3e-52 210.3 130 71.5
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 2.6e-49 200.7 129 69.8
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.8e-34 151.4 479 27.6
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 3.1e-34 150.6 456 28.3
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 1.3e-27 128.6 86 70.9
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 1.9e-23 114.8 348 28.7
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 9.4e-23 112.5 361 29.4
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 2.3e-13 81.3 54 70.4
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 2.0e-12 78.2 80 55.0
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 9.8e-12 75.9 166 33.7
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 7.0e-10 69.7 55 56.4
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.6e-09 68.6 107 37.4
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 1.3e-08 65.5 61 52.5
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 1.3e-08 65.5 61 52.5
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 2.5e-07 61.2 61 45.9
Rhsim13G0060400 Rhododendron simsii HOM05D001179 ORTHO05D339156 6.1e-06 56.6 46 60.9


User provided reference genes

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