Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 0.0e+00 1293.5 654 100.0
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 5.9e-254 880.9 650 68.0
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 2.6e-246 855.5 650 67.4
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 1.7e-245 852.8 653 65.8
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.7e-245 852.8 644 66.1
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 3.8e-245 851.7 650 67.1
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 1.1e-244 850.1 650 67.1
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.4e-244 849.7 650 65.1
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.4e-242 843.2 659 65.9
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 3.0e-242 842.0 650 66.2
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 2.6e-241 839.0 645 66.5
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 5.9e-238 827.8 630 68.3
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 3.8e-237 825.1 630 66.8
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 6.5e-237 824.3 646 65.8
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 3.6e-235 818.5 649 64.1
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 6.1e-235 817.8 659 64.2
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 1.0e-234 817.0 655 61.8
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 1.4e-234 816.6 646 64.7
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 2.8e-232 808.9 645 63.7
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 7.0e-231 804.3 652 62.3
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 7.0e-231 804.3 654 60.1
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 2.0e-230 802.7 651 64.4
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 5.9e-230 801.2 656 61.1
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 7.7e-230 800.8 652 61.0
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.9e-228 796.2 646 60.8
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 2.7e-227 792.3 645 60.5
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 8.0e-227 790.8 646 60.5
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 4.0e-226 788.5 655 61.8
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 1.2e-225 786.9 648 61.0
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 4.4e-225 785.0 646 60.1
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 2.2e-224 782.7 658 60.3
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 1.4e-223 780.0 650 62.6
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 1.4e-223 780.0 644 60.1
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.8e-223 779.6 645 61.1
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 3.1e-223 778.9 648 61.3
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 5.4e-223 778.1 656 60.7
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 1.3e-221 773.5 659 60.1
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 2.2e-221 772.7 676 58.0
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 8.5e-221 770.8 646 59.0
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 8.5e-221 770.8 651 61.0
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 4.2e-220 768.5 649 60.1
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 2.1e-219 766.1 644 59.6
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 4.7e-219 765.0 645 60.3
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 4.7e-219 765.0 652 60.6
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 8.0e-219 764.2 651 60.4
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.0e-218 763.8 661 59.8
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.0e-218 762.3 659 59.2
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 4.0e-218 761.9 645 60.3
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 4.0e-218 761.9 648 60.0
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 8.8e-218 760.8 654 60.4
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 8.8e-218 760.8 654 58.9
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 2.0e-217 759.6 644 60.1
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 4.4e-217 758.4 648 59.3
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 7.5e-217 757.7 654 59.3
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 6.3e-216 754.6 649 59.8
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.4e-215 753.4 654 57.8
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 1.4e-215 753.4 652 59.2
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 1.8e-215 753.1 647 60.1
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.6e-214 750.0 644 59.6
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 2.0e-214 749.6 649 58.4
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.7e-214 749.2 659 58.6
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 4.5e-214 748.4 647 59.8
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 5.9e-214 748.0 647 59.7
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 1.7e-213 746.5 643 59.1
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 2.3e-213 746.1 649 59.6
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 2.9e-213 745.7 647 59.7
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.8e-213 745.3 647 59.4
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 2.5e-212 742.7 661 58.7
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.3e-212 742.3 659 57.5
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 2.3e-210 736.1 651 59.0
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 2.3e-210 736.1 651 59.0
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 4.0e-210 735.3 654 58.0
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 2.6e-209 732.6 658 56.5
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 3.4e-209 732.3 654 57.5
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 1.2e-206 723.8 660 56.8
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 7.3e-204 714.5 656 56.1
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 2.8e-203 712.6 647 58.0
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 2.8e-203 712.6 660 56.8
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 4.7e-203 711.8 646 57.9
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 4.7e-203 711.8 660 56.8
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.4e-202 710.3 663 55.1
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 7.5e-201 704.5 664 54.2
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 1.3e-200 703.7 645 56.1
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 6.0e-198 694.9 654 55.5
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.5e-196 690.3 652 56.4
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.5e-196 690.3 647 57.2
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 2.9e-192 676.0 655 53.4
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 4.1e-191 672.2 646 53.1
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 1.0e-189 667.5 654 54.3
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.3e-189 667.2 662 52.9
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 8.6e-189 664.5 645 52.9
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.1e-188 664.1 680 51.3
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.1e-186 657.5 653 54.1
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 5.1e-181 638.6 486 64.8
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 5.6e-180 635.2 654 50.8
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 1.2e-179 634.0 644 50.6
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 2.1e-179 633.3 515 64.1
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.1e-167 594.3 658 48.3
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.3e-165 586.6 658 47.4
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.6e-147 527.3 419 65.4
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.7e-139 500.7 513 49.5
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 4.1e-138 496.1 482 53.9
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 5.1e-133 479.2 621 46.7
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.1e-132 478.0 356 67.1
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 6.1e-126 455.7 657 39.9
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 9.1e-122 441.8 361 62.3
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.6e-105 387.9 643 35.5
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 2.0e-105 387.5 649 36.2
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.4e-100 370.2 505 41.0
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 7.8e-89 332.4 359 46.5
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 5.6e-79 299.7 286 50.3
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 3.1e-77 293.9 759 29.4
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 1.4e-74 285.0 271 51.7
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 4.3e-71 273.5 270 54.1
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 3.0e-64 250.8 699 27.9
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 3.2e-58 230.7 349 37.5
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 3.2e-58 230.7 260 46.9
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.5e-44 185.3 217 49.3
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.3e-30 139.0 80 77.5
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 2.6e-28 131.3 236 34.7
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 3.4e-28 131.0 127 57.5
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 8.8e-24 116.3 208 32.7
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.2e-22 111.7 101 48.5
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.6e-20 104.8 224 32.1
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.8e-19 100.9 86 47.7
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 8.5e-19 99.8 211 31.8
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.2e-17 95.9 62 75.8
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.2e-17 95.9 88 55.7
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.8e-16 92.0 165 35.2
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.9e-16 90.9 115 42.6
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 4.4e-15 87.4 91 48.4
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 5.7e-15 87.0 72 58.3
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 5.3e-13 80.5 65 58.5
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 7.0e-13 80.1 72 54.2
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 1.5e-07 62.4 52 59.6


User provided reference genes

Program Settings