Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 9.2e-176 620.2 324 100.0
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 7.7e-114 414.5 292 73.3
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 1.7e-113 413.3 326 66.0
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 9.4e-112 407.5 310 70.6
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 8.0e-111 404.4 326 68.7
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.3e-110 402.9 303 72.3
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.0e-109 399.8 317 64.7
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 2.8e-108 396.0 313 64.9
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 8.3e-108 394.4 303 69.0
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 8.3e-108 394.4 300 67.0
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 5.3e-107 391.7 319 63.9
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 5.3e-107 391.7 302 67.2
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 5.3e-107 391.7 316 64.9
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.2e-106 390.6 300 68.7
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 2.7e-106 389.4 315 66.0
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 4.5e-106 388.7 319 66.5
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.7e-105 386.7 319 63.3
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 6.5e-105 384.8 305 66.9
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 6.5e-105 384.8 320 63.8
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.5e-104 383.6 304 69.4
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.5e-104 383.6 263 72.6
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 5.5e-104 381.7 319 63.0
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 1.2e-103 380.6 319 66.1
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.2e-103 380.6 321 65.7
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.2e-103 380.6 301 65.4
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.6e-103 380.2 300 67.0
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 6.1e-103 378.3 302 66.2
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 8.0e-103 377.9 309 64.4
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 3.0e-102 375.9 322 65.5
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 5.2e-102 375.2 302 65.9
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 8.8e-102 374.4 301 67.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 8.8e-102 374.4 313 64.9
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.5e-101 373.6 328 65.5
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 2.0e-101 373.2 296 64.9
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 4.4e-101 372.1 314 64.6
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 4.4e-101 372.1 246 75.6
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 5.7e-101 371.7 315 62.5
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 7.5e-101 371.3 328 63.1
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 9.8e-101 370.9 304 65.1
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.7e-100 370.2 318 64.2
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.7e-100 370.2 320 64.4
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.7e-100 370.2 350 60.6
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 4.8e-100 368.6 309 63.8
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.4e-99 367.1 300 64.7
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 2.4e-99 366.3 252 71.8
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 4.1e-99 365.5 256 71.5
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 7.7e-98 361.3 253 71.9
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.3e-97 360.5 319 63.3
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 5.0e-97 358.6 334 59.6
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 5.0e-97 358.6 278 66.2
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 5.0e-97 358.6 329 60.5
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.1e-96 357.5 319 61.1
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.4e-94 350.5 319 60.2
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 2.3e-94 349.7 323 62.2
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 2.0e-93 346.7 325 59.7
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 2.6e-93 346.3 300 65.0
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 4.4e-93 345.5 308 60.1
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 7.5e-93 344.7 317 60.9
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 3.7e-92 342.4 303 62.4
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 4.9e-92 342.0 336 56.2
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 6.3e-92 341.7 262 67.9
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 1.2e-90 337.4 326 55.5
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.2e-90 337.4 333 59.2
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.6e-90 337.0 254 67.7
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.7e-90 336.3 362 53.0
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 3.3e-88 329.3 257 66.9
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 4.3e-88 328.9 309 57.3
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 4.3e-88 328.9 297 63.3
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 7.3e-88 328.2 289 63.3
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 7.3e-88 328.2 329 59.0
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 9.5e-88 327.8 302 59.6
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 3.6e-87 325.9 328 58.8
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 3.1e-86 322.8 308 59.7
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 3.1e-86 322.8 218 70.6
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 6.8e-86 321.6 316 60.8
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 8.9e-86 321.2 218 70.2
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.5e-85 320.5 237 70.0
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 2.6e-85 319.7 310 59.4
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 5.8e-85 318.5 327 53.5
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 7.5e-85 318.2 306 61.1
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 2.2e-84 316.6 307 57.3
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.2e-84 316.6 317 58.7
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 2.2e-84 316.6 307 54.1
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 6.4e-84 315.1 317 58.4
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 9.2e-83 311.2 303 58.4
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 4.6e-82 308.9 317 57.4
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 4.6e-82 308.9 304 59.2
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.6e-82 308.9 304 59.2
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 4.6e-82 308.9 312 54.2
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.7e-81 307.0 325 55.7
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 3.0e-81 306.2 312 55.8
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 5.0e-81 305.4 287 59.9
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 8.6e-81 304.7 302 58.9
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.5e-80 303.9 291 60.1
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.9e-80 303.5 322 58.1
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 5.6e-80 302.0 322 57.8
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 7.3e-80 301.6 322 57.8
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.6e-79 300.4 304 57.9
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 4.7e-79 298.9 308 58.1
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 4.7e-79 298.9 308 58.1
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.1e-78 297.7 275 57.8
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 9.8e-77 291.2 308 56.2
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 4.9e-76 288.9 324 54.3
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 2.1e-74 283.5 324 54.3
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.5e-72 277.3 308 54.2
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 9.5e-72 274.6 234 58.5
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.8e-71 273.1 254 56.7
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 6.8e-70 268.5 171 73.7
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 6.0e-66 255.4 305 48.5
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 3.0e-65 253.1 308 52.3
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 2.4e-62 243.4 266 49.2
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 2.9e-60 236.5 287 49.8
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 7.8e-58 228.4 135 80.0
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.3e-55 221.1 299 42.8
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 8.1e-55 218.4 268 44.4
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.4e-54 216.9 350 44.3
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.4e-51 207.6 267 48.7
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 5.8e-45 185.7 166 60.2
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 3.8e-44 183.0 140 67.9
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 3.8e-44 183.0 124 65.3
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 9.0e-38 161.8 257 38.1
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 4.2e-35 152.9 177 44.6
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 7.1e-35 152.1 90 80.0
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 7.1e-35 152.1 92 78.3
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.9e-32 144.1 305 35.4
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.0e-25 121.7 170 47.6
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-24 116.7 291 29.9
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 4.8e-23 112.8 65 81.5
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 2.4e-22 110.5 198 33.3
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 3.1e-22 110.2 153 45.8
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.1e-19 101.7 390 26.7
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.7e-15 87.8 182 31.9
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.6e-13 80.5 203 29.1
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.1e-11 75.1 65 60.0
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.6e-10 71.2 71 57.7
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 6.3e-07 59.3 96 30.2


User provided reference genes

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