Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 2.2e-51 205.3 99 100.0
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 1.8e-34 149.1 96 74.0
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 5.9e-33 144.1 97 70.1
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 2.3e-32 142.1 97 70.1
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 1.5e-31 139.4 94 70.2
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 2.5e-31 138.7 93 72.0
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 1.2e-30 136.3 94 69.1
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 2.1e-30 135.6 94 68.1
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 4.7e-30 134.4 94 67.0
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 8.0e-30 133.7 95 66.3
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.0e-29 133.3 99 64.6
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.8e-29 132.5 95 65.3
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 1.8e-29 132.5 96 64.6
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 2.3e-29 132.1 93 71.0
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 2.3e-29 132.1 99 63.6
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 3.0e-29 131.7 94 68.1
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 4.0e-29 131.3 94 64.9
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 4.0e-29 131.3 92 68.5
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 5.2e-29 131.0 96 64.6
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 6.8e-29 130.6 94 68.1
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 8.9e-29 130.2 95 66.3
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 8.9e-29 130.2 94 67.0
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 1.2e-28 129.8 94 64.9
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 1.5e-28 129.4 93 66.7
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 1.5e-28 129.4 94 67.0
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 1.5e-28 129.4 92 67.4
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 1.5e-28 129.4 92 67.4
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 4.4e-28 127.9 94 66.0
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 4.4e-28 127.9 99 62.6
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 4.4e-28 127.9 96 61.5
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 5.7e-28 127.5 96 64.6
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 9.8e-28 126.7 146 48.6
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.3e-27 126.3 96 63.5
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 1.3e-27 126.3 96 63.5
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.3e-27 126.3 92 62.0
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 1.7e-27 125.9 96 61.5
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 2.2e-27 125.6 96 63.5
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 2.2e-27 125.6 96 63.5
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 2.2e-27 125.6 96 63.5
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 2.2e-27 125.6 94 61.7
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 2.9e-27 125.2 95 63.2
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 2.9e-27 125.2 94 64.9
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 2.9e-27 125.2 94 64.9
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 2.9e-27 125.2 96 61.5
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 2.9e-27 125.2 96 61.5
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 4.9e-27 124.4 95 63.2
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 8.3e-27 123.6 94 63.8
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 1.1e-26 123.2 96 61.5
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 1.8e-26 122.5 96 62.5
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 2.4e-26 122.1 94 63.8
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 4.1e-26 121.3 96 61.5
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 7.0e-26 120.6 88 65.9
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 9.2e-26 120.2 91 62.6
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 2.7e-25 118.6 93 61.3
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 2.7e-25 118.6 96 59.4
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.5e-25 118.2 96 59.4
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.5e-25 118.2 96 59.4
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.5e-25 118.2 96 59.4
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 4.6e-25 117.9 96 60.4
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 4.6e-25 117.9 93 61.3
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 4.6e-25 117.9 96 61.5
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 5.9e-25 117.5 96 59.4
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 7.8e-25 117.1 89 61.8
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 1.0e-24 116.7 98 58.2
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 1.3e-24 116.3 96 58.3
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 1.3e-24 116.3 93 60.2
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 1.7e-24 115.9 96 56.2
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 1.7e-24 115.9 93 58.1
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 3.0e-24 115.2 97 60.8
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 5.0e-24 114.4 97 59.8
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 5.6e-23 110.9 97 57.7
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 7.3e-23 110.5 96 57.3
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 9.5e-23 110.2 87 60.9
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.2e-22 109.8 95 57.9
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 1.2e-22 109.8 93 57.0
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 3.6e-22 108.2 134 45.5
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 4.7e-22 107.8 97 54.6
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 8.0e-22 107.1 72 69.4
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 8.0e-22 107.1 93 54.8
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 4.0e-21 104.8 90 57.8
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 5.2e-21 104.4 70 68.6
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 6.8e-21 104.0 79 64.6
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 6.8e-21 104.0 97 56.7
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.0e-20 102.4 92 56.5
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 4.4e-20 101.3 93 53.8
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 7.5e-20 100.5 92 57.6
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 1.3e-19 99.8 104 51.9
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 1.7e-19 99.4 94 54.3
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 1.4e-18 96.3 81 64.2
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 1.2e-17 93.2 170 37.1
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 1.7e-16 89.4 91 50.5
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.9e-16 88.2 69 65.2
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 5.0e-16 87.8 70 62.9
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 9.5e-15 83.6 54 72.2
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 9.5e-15 83.6 79 50.6
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 9.5e-15 83.6 49 79.6
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 4.7e-14 81.3 64 60.9
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.8e-13 79.3 71 50.7
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 2.3e-13 79.0 68 54.4
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 3.4e-12 75.1 49 65.3
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 8.3e-11 70.5 67 53.7
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.9e-10 69.3 65 53.8
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 3.0e-08 62.0 49 59.2
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 1.9e-07 59.3 36 75.0


User provided reference genes

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