Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1546.9 788 100.0
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1236.9 785 80.9
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1236.1 780 81.3
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1221.8 776 81.4
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1218.4 787 80.8
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1213.0 777 80.4
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1208.7 783 79.4
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1206.0 730 83.8
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1205.3 780 79.7
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1203.7 779 80.1
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1201.4 779 80.0
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1194.9 769 79.6
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1192.2 831 75.0
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1186.0 779 77.9
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1185.2 728 82.3
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1182.9 767 79.8
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1178.3 787 77.4
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1176.4 787 77.8
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1174.1 766 78.2
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1172.1 777 77.5
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1168.7 772 77.7
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1165.6 785 76.4
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1165.2 739 79.8
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1158.7 779 76.5
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1154.4 781 77.1
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1154.4 800 75.2
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1154.0 722 81.0
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1150.2 724 80.7
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1149.8 741 79.1
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1148.3 776 76.2
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1147.9 800 75.1
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1147.1 790 75.6
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1146.0 743 79.0
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1143.3 777 76.1
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1141.7 789 74.9
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1139.4 771 76.0
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1139.0 777 75.4
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1138.3 695 81.9
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1137.9 778 74.7
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1135.6 704 82.2
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1134.8 736 78.5
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1133.6 730 78.1
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1131.3 754 77.1
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1129.8 789 73.9
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1124.4 716 80.3
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1124.0 716 78.1
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1120.5 767 74.6
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1119.4 779 73.0
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1115.1 772 73.8
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1106.3 778 73.9
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1102.4 820 71.3
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1101.7 744 75.8
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1100.1 780 72.1
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1090.5 727 75.8
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1087.0 794 71.9
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1081.6 768 73.6
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1079.7 725 75.7
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 0.0e+00 1078.5 762 74.3
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 0.0e+00 1075.8 719 77.2
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 2.2e-311 1072.0 850 67.4
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 2.7e-311 1071.6 777 71.2
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 1.1e-310 1069.7 789 71.5
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.4e-310 1068.5 747 73.6
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 2.2e-308 1062.0 650 83.2
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 3.8e-308 1061.2 784 71.7
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.1e-307 1059.7 776 71.5
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 5.5e-307 1057.4 777 70.9
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 5.5e-307 1057.4 777 70.9
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 2.1e-306 1055.4 779 70.7
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.8e-305 1052.4 782 71.5
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 6.7e-305 1050.4 764 69.6
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 1.1e-304 1049.7 729 75.0
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 1.5e-304 1049.3 726 73.7
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 780 70.9
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 3.7e-303 1044.6 782 69.3
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.4e-302 1042.7 739 71.7
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 2.4e-302 1042.0 765 70.3
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 5.3e-302 1040.8 726 73.1
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 7.0e-302 1040.4 740 71.9
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 2.0e-301 1038.9 739 71.6
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 3.5e-301 1038.1 749 71.6
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 3.5e-301 1038.1 724 71.4
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 4.5e-301 1037.7 779 71.5
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 5.9e-301 1037.3 749 71.4
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 2.2e-300 1035.4 743 71.6
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.9e-300 1035.0 722 71.6
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 3.8e-300 1034.6 773 70.0
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 6.5e-300 1033.9 773 70.0
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 6.5e-300 1033.9 773 70.0
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 8.5e-300 1033.5 777 70.0
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 1.1e-299 1033.1 699 75.5
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 1.0e-297 1026.5 723 71.8
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 1.8e-297 1025.8 745 71.8
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 7.0e-294 1013.8 766 68.8
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 3.5e-293 1011.5 775 68.4
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.0e-288 995.7 696 74.1
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 4.3e-251 871.7 637 73.8
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.6e-248 862.4 529 79.6
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 9.9e-248 860.5 532 78.8
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 6.2e-234 814.7 750 57.3
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.2e-232 810.4 719 57.0
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 6.0e-229 798.1 713 58.8
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.3e-227 792.0 729 56.4
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 4.5e-224 781.9 718 58.2
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.1e-221 773.1 534 68.0
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.1e-213 746.5 532 66.5
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 8.7e-212 741.1 530 66.2
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.2e-198 695.7 517 64.6
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.4e-195 685.6 414 80.4
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 1.6e-173 614.0 397 78.3
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 9.2e-169 598.2 414 68.8
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 8.3e-154 548.5 343 79.0
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.4e-130 469.2 263 84.0
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 2.5e-105 387.5 696 36.2
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 1.7e-98 364.8 622 42.0
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.5e-98 362.8 278 64.0
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 7.2e-97 359.4 295 64.4
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 1.8e-95 354.8 490 41.4
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.4e-87 328.6 280 65.4
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.7e-72 277.7 351 48.4
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 4.1e-68 263.8 703 29.7
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 4.3e-41 174.1 99 80.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 2.6e-38 164.9 83 90.4
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.1e-33 149.4 130 61.5
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 9.5e-33 146.4 100 73.0
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 3.0e-26 124.8 138 55.1
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 2.1e-24 118.6 114 55.3
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 5.2e-23 114.0 54 92.6
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 5.1e-18 97.4 120 44.2
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 3.8e-13 81.3 206 31.6
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.6e-11 75.9 74 58.1
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 2.3e-10 72.0 41 78.0
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 3.0e-10 71.6 399 24.6
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.3e-09 67.8 80 48.8
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 1.6e-08 65.9 66 48.5
Nn4g25166 Nelumbo nucifera HOM05D007982 ORTHO05D010255 3.1e-07 61.6 363 23.4
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 5.3e-07 60.8 331 23.9
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 6.9e-07 60.5 85 42.4
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 9.0e-07 60.1 253 23.3
Gorai.002G037200 Gossypium raimondii HOM05D008447 ORTHO05D010638 1.2e-06 59.7 330 22.7
Nitab4.5_0003038g0010 Nicotiana tabacum HOM05D007982 ORTHO05D010255 2.6e-06 58.5 352 24.7
Mapoly0001s0484 Marchantia polymorpha HOM05D007982 ORTHO05D010255 4.5e-06 57.8 401 24.4
PRCOL_00000676 Prasinoderma coloniale HOM05D008447 ORTHO05D010638 4.5e-06 57.8 305 23.9
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 5.8e-06 57.4 347 22.5
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 5.8e-06 57.4 270 24.1


User provided reference genes

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