Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 3.2e-105 385.6 269 100.0
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 1.4e-73 280.4 271 77.9
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 7.2e-73 278.1 270 77.8
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 1.6e-72 276.9 270 79.3
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 1.8e-71 273.5 270 76.3
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.5e-70 270.4 271 78.6
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 1.5e-70 270.4 270 78.5
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 5.7e-70 268.5 271 80.1
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 4.8e-69 265.4 271 77.9
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.1e-68 264.2 279 77.8
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.2e-67 260.8 285 76.1
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 2.0e-67 260.0 271 80.4
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.7e-66 256.9 271 74.9
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 1.1e-65 254.2 272 78.7
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 5.5e-65 251.9 272 67.3
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 5.5e-65 251.9 283 71.7
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 2.1e-64 250.0 245 84.5
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 3.6e-64 249.2 282 75.2
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 7.9e-64 248.1 285 75.1
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 3.9e-63 245.7 277 72.2
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 3.9e-63 245.7 270 75.9
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 6.7e-63 245.0 272 74.3
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 1.5e-62 243.8 277 75.8
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 2.0e-62 243.4 284 73.9
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 2.6e-62 243.0 273 76.2
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 2.6e-62 243.0 282 70.2
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 4.4e-62 242.3 271 75.3
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 4.4e-62 242.3 271 75.3
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 4.4e-62 242.3 279 72.8
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 5.7e-62 241.9 270 76.7
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 9.7e-62 241.1 271 66.1
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 1.3e-61 240.7 284 72.2
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 1.7e-61 240.4 283 71.4
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 1.7e-61 240.4 257 63.4
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 1.7e-61 240.4 285 71.6
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 2.2e-61 240.0 273 74.7
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 8.2e-61 238.0 285 71.2
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 2.4e-60 236.5 271 72.7
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 3.1e-60 236.1 291 68.4
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 3.1e-60 236.1 270 74.4
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 4.1e-60 235.7 285 71.9
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 5.3e-60 235.3 285 71.6
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 9.1e-60 234.6 283 68.2
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.2e-59 234.2 273 72.5
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 2.0e-59 233.4 274 70.1
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 3.4e-59 232.6 217 86.2
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 5.9e-59 231.9 283 67.1
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 5.9e-59 231.9 244 78.7
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 7.7e-59 231.5 279 72.4
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 7.7e-59 231.5 313 46.3
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 1.0e-58 231.1 222 87.8
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.3e-58 230.7 226 81.4
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.3e-58 230.7 216 87.0
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.3e-58 230.7 216 87.0
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 1.7e-58 230.3 286 72.4
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 2.2e-58 229.9 281 73.0
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 2.2e-58 229.9 226 84.5
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 2.9e-58 229.6 282 70.9
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 3.8e-58 229.2 281 72.6
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 6.5e-58 228.4 281 72.6
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 1.1e-57 227.6 273 73.3
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 1.4e-57 227.3 281 71.5
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 1.4e-57 227.3 281 73.0
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 1.9e-57 226.9 273 60.4
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 1.9e-57 226.9 282 70.6
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 2.5e-57 226.5 283 62.9
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 4.2e-57 225.7 282 69.5
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 4.2e-57 225.7 282 70.2
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 5.5e-57 225.3 281 71.2
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 9.4e-57 224.6 268 72.4
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 1.6e-56 223.8 291 58.1
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 2.7e-56 223.0 282 69.5
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 4.7e-56 222.2 264 73.5
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 1.0e-55 221.1 285 67.4
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 1.4e-55 220.7 206 89.3
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 2.3e-55 219.9 223 82.5
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 2.3e-55 219.9 216 74.5
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 7.4e-54 214.9 196 87.8
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.3e-53 214.2 252 54.0
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 3.7e-53 212.6 196 85.2
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 4.8e-53 212.2 283 70.0
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.7e-50 203.8 193 77.2
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 3.0e-47 193.0 228 63.2
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 4.0e-47 192.6 366 41.0
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 8.8e-47 191.4 182 83.0
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 3.3e-46 189.5 224 63.4
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 7.5e-46 188.3 212 76.9
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 1.4e-44 184.1 213 62.9
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.5e-38 164.1 85 88.2
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.5e-38 164.1 85 88.2
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 7.5e-38 161.8 87 87.4
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 9.8e-38 161.4 187 55.6
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 3.1e-36 156.4 87 85.1
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 4.1e-36 156.0 85 85.9
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 2.7e-35 153.3 85 84.7
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.9e-35 152.1 87 81.6
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.9e-35 152.1 87 81.6
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 1.5e-33 147.5 237 43.0
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 6.1e-32 142.1 180 57.8
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.4e-31 141.0 213 74.2
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 2.0e-27 127.1 219 59.4
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 2.3e-23 113.6 96 64.6
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 4.0e-23 112.8 142 59.2
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 7.5e-22 108.6 206 70.4
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 8.3e-21 105.1 119 53.8
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.7e-18 97.4 73 67.1
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 3.3e-17 93.2 60 80.0
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 1.5e-14 84.3 180 49.4
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 1.5e-14 84.3 45 91.1
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 9.8e-14 81.6 65 67.7
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 1.0e-10 71.6 43 74.4
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 3.3e-09 66.6 87 49.4
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 7.3e-09 65.5 54 64.8
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 1.5e-06 57.8 51 54.9


User provided reference genes

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