Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 3.3e-135 485.0 232 100.0
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 6.8e-96 354.4 232 73.3
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 1.1e-93 347.1 230 69.1
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 1.9e-90 336.3 235 67.7
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 2.8e-89 332.4 228 69.3
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 4.7e-89 331.6 230 68.7
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 8.0e-89 330.9 228 68.9
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 6.8e-88 327.8 240 67.1
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 6.8e-88 327.8 232 65.5
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 2.0e-87 326.2 230 68.3
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 1.3e-86 323.6 232 65.9
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 2.2e-86 322.8 234 70.5
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 6.4e-86 321.2 228 66.2
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 1.1e-85 320.5 234 66.2
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 2.4e-85 319.3 211 69.2
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 9.2e-85 317.4 244 64.8
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 1.6e-84 316.6 230 66.5
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 2.0e-84 316.2 235 65.1
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 4.6e-84 315.1 231 68.0
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 1.0e-83 313.9 231 64.1
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 2.3e-83 312.8 229 64.6
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 3.0e-83 312.4 231 64.1
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 5.0e-83 311.6 243 63.8
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 1.9e-82 309.7 234 62.0
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 4.3e-82 308.5 229 65.1
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 9.5e-82 307.4 236 61.9
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 1.6e-81 306.6 239 64.9
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 2.1e-81 306.2 217 67.3
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 2.8e-81 305.8 238 63.9
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 3.6e-81 305.4 237 63.3
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 2.3e-80 302.8 232 65.5
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 2.3e-80 302.8 243 63.8
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 4.0e-80 302.0 238 62.2
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 4.0e-80 302.0 229 63.3
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 4.0e-80 302.0 223 64.1
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 5.2e-80 301.6 208 68.8
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 6.8e-80 301.2 247 61.9
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 6.8e-80 301.2 208 68.8
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 8.9e-80 300.8 208 68.8
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 2.0e-79 299.7 205 64.4
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 2.0e-79 299.7 232 62.9
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 7.5e-79 297.7 223 63.7
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-78 297.0 231 60.2
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 1.7e-78 296.6 237 60.8
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 2.2e-78 296.2 232 61.2
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 3.7e-78 295.4 223 62.8
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 1.1e-77 293.9 207 63.8
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 1.4e-77 293.5 221 64.7
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 1.4e-77 293.5 239 59.8
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 2.4e-77 292.7 226 60.2
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 3.2e-77 292.4 222 60.8
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 5.4e-77 291.6 231 59.7
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 5.4e-77 291.6 205 64.4
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 5.4e-77 291.6 232 62.1
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 7.0e-77 291.2 226 63.3
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 4.6e-76 288.5 209 64.1
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 2.3e-75 286.2 231 62.3
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 6.6e-75 284.6 208 63.9
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 2.5e-74 282.7 209 64.6
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 3.3e-74 282.3 235 60.0
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 4.3e-74 282.0 244 58.6
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 2.1e-73 279.6 210 61.0
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 2.1e-73 279.6 232 59.9
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.8e-72 276.6 229 59.8
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 1.5e-71 273.5 228 58.8
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 4.4e-71 271.9 235 58.3
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 5.8e-71 271.6 238 60.9
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 1.3e-70 270.4 240 55.8
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 3.7e-70 268.9 213 60.6
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 1.9e-69 266.5 242 56.6
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 7.1e-69 264.6 219 59.8
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.7e-68 262.7 242 57.0
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 5.1e-67 258.5 248 52.8
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 1.2e-65 253.8 224 56.2
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 4.4e-63 245.4 239 53.1
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 4.6e-60 235.3 228 51.8
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 5.1e-59 231.9 188 56.9
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 6.6e-59 231.5 192 56.8
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 4.3e-58 228.8 218 50.0
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 1.6e-57 226.9 230 49.6
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 1.6e-57 226.9 266 47.7
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 5.2e-56 221.9 202 51.0
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 1.2e-55 220.7 202 50.5
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 2.6e-55 219.5 245 45.3
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 9.9e-55 217.6 214 48.6
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 2.2e-54 216.5 204 48.5
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 2.9e-54 216.1 263 46.8
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 8.4e-54 214.5 202 49.5
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 4.2e-53 212.2 215 49.3
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 1.6e-52 210.3 267 46.8
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 2.7e-52 209.5 268 44.8
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 2.7e-52 209.5 268 44.8
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 2.7e-52 209.5 263 43.7
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 3.5e-52 209.1 274 46.0
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 6.0e-52 208.4 268 44.4
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 6.0e-52 208.4 268 44.4
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 6.0e-52 208.4 268 45.1
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 7.8e-52 208.0 268 44.4
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 1.0e-51 207.6 264 45.1
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 1.3e-51 207.2 262 44.7
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 6.6e-51 204.9 268 43.3
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 3.1e-48 196.1 204 49.0
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 2.9e-46 189.5 137 68.6
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 6.4e-46 188.3 202 46.0
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 1.6e-44 183.7 157 62.4
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 2.1e-44 183.3 227 47.1
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-43 180.6 196 45.4
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 3.9e-43 179.1 123 70.7
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 1.9e-42 176.8 224 44.2
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 7.4e-42 174.9 137 65.0
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.1e-41 173.3 205 45.9
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-40 170.6 196 42.9
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.8e-40 170.2 205 45.9
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-37 160.6 193 47.7
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 1.3e-33 147.5 213 40.4
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 3.8e-30 136.0 149 47.7
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 2.7e-28 129.8 227 37.0
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 3.5e-28 129.4 252 35.3
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 3.5e-28 129.4 217 36.9
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 4.6e-28 129.0 236 34.7
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 9.7e-26 121.3 216 37.0
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.4e-24 116.7 217 36.4
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 2.6e-23 113.2 230 33.9
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 9.4e-21 104.8 106 49.1
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 7.7e-15 85.1 56 62.5
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 2.9e-14 83.2 271 28.0
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 1.1e-13 81.3 104 40.4
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 9.4e-13 78.2 105 40.0
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 9.4e-13 78.2 159 29.6
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 2.1e-12 77.0 105 39.0
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 9.7e-10 68.2 54 48.1
Cre06.g278187 Chlamydomonas reinhardtii HOM05D066552 ORTHO05D044319 1.5e-07 60.8 206 26.2
A02p01110 Brassica napus HOM05D005944 ORTHO05D007188 1.7e-06 57.4 33 72.7
PGR119G0548 Punica granatum HOM05D000157 ORTHO05D013111 1.7e-06 57.4 87 34.5


User provided reference genes

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