Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 2.6e-305 1051.2 519 100.0
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 1.4e-282 975.7 519 91.3
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 4.5e-281 970.7 520 91.5
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.3e-280 969.1 519 91.1
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.3e-280 969.1 519 90.4
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 1.7e-280 968.8 520 90.4
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 2.2e-280 968.4 525 90.3
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.9e-280 968.0 520 90.8
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.9e-279 965.3 519 90.4
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 3.5e-278 961.1 524 89.5
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.0e-277 959.5 522 89.3
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.8e-277 958.7 522 89.1
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 3.0e-277 958.0 521 89.1
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 5.7e-276 953.7 514 89.9
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.3e-275 952.6 518 88.8
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.6e-275 952.2 518 89.6
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.1e-275 951.8 521 89.6
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 2.8e-275 951.4 554 85.2
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 3.7e-275 951.0 529 88.3
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 4.8e-275 950.7 514 89.7
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 8.2e-275 949.9 514 89.7
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.8e-274 948.7 519 88.8
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.4e-274 948.3 516 88.4
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 3.1e-274 948.0 521 88.9
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 9.0e-274 946.4 514 89.3
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.2e-273 946.0 521 88.9
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.5e-273 945.7 527 87.9
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 2.6e-273 944.9 519 87.7
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 4.5e-273 944.1 517 88.6
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 4.5e-273 944.1 521 88.7
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 4.5e-273 944.1 512 88.7
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 5.8e-273 943.7 521 88.5
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 5.8e-273 943.7 521 88.5
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 5.8e-273 943.7 526 87.5
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 7.6e-273 943.3 528 87.9
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.3e-272 942.6 519 87.9
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.3e-272 942.6 521 88.9
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.3e-272 942.6 519 87.3
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.3e-272 942.6 519 87.3
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 2.2e-272 941.8 518 89.0
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.2e-272 941.8 522 87.5
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.9e-272 941.4 521 88.1
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.8e-272 941.0 528 87.1
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 5.0e-272 940.6 528 87.1
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 6.5e-272 940.3 563 82.9
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 8.4e-272 939.9 518 87.1
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 8.4e-272 939.9 513 89.3
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 8.4e-272 939.9 521 87.9
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.9e-271 938.7 526 86.1
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 7.1e-271 936.8 528 87.3
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 7.1e-271 936.8 513 88.7
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.1e-270 935.3 525 86.9
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.5e-270 934.5 521 87.5
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.0e-269 932.9 522 85.8
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.0e-269 932.9 505 88.5
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 2.3e-269 931.8 525 86.3
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 3.0e-269 931.4 518 86.5
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 3.9e-269 931.0 518 86.5
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 8.7e-269 929.9 526 86.7
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 2.5e-268 928.3 511 88.3
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 2.5e-268 928.3 526 86.1
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.5e-268 928.3 526 86.5
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 4.3e-268 927.5 524 84.9
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 4.3e-268 927.5 500 89.6
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 7.4e-268 926.8 519 86.3
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 9.7e-268 926.4 525 85.9
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 9.7e-268 926.4 525 85.9
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.3e-267 926.0 517 86.1
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.3e-267 926.0 519 87.7
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 2.2e-267 925.2 511 87.1
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.2e-267 925.2 525 85.7
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 3.7e-267 924.5 518 85.9
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 4.8e-267 924.1 525 85.7
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 6.3e-267 923.7 525 85.7
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 6.3e-267 923.7 525 85.7
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.1e-266 922.9 531 85.1
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.4e-266 922.5 522 86.4
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 2.4e-266 921.8 526 85.6
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 5.3e-266 920.6 522 86.4
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 6.9e-266 920.2 526 84.6
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.4e-265 917.9 546 82.1
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.4e-265 917.9 521 86.4
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.0e-264 916.4 522 86.0
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.3e-264 916.0 515 86.6
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 6.5e-264 913.7 522 85.8
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 1.1e-263 912.9 501 87.8
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.5e-263 911.8 522 85.2
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 2.5e-263 911.8 509 86.8
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 3.2e-263 911.4 516 85.5
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 4.2e-263 911.0 523 84.1
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 5.5e-263 910.6 500 87.0
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 5.5e-263 910.6 493 90.1
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 5.5e-263 910.6 511 86.3
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.2e-262 909.4 509 85.1
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 6.1e-262 907.1 521 85.8
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 7.9e-262 906.7 519 85.0
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.5e-260 901.7 523 83.4
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.2e-257 892.9 523 82.2
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.4e-257 891.3 509 83.5
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 8.5e-256 886.7 511 82.8
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.5e-255 885.2 514 81.7
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 9.4e-255 883.2 520 82.5
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 9.4e-255 883.2 520 82.5
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 4.7e-254 880.9 518 79.7
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.0e-248 863.2 521 82.1
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.5e-247 858.6 529 77.3
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 3.2e-247 858.2 519 81.3
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.6e-241 839.3 564 74.6
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.2e-240 835.5 529 76.0
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 4.8e-235 817.8 521 75.8
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.1e-234 816.6 521 75.2
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.3e-232 809.7 473 85.0
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.0e-228 795.8 506 73.9
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.0e-228 795.8 500 75.2
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 5.7e-228 794.3 514 71.6
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 7.7e-225 783.9 514 71.0
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 7.2e-223 777.3 495 72.7
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.8e-221 772.7 514 69.5
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 5.4e-218 761.1 525 74.7
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.5e-217 758.4 525 74.3
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 4.6e-217 758.1 511 71.4
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 7.3e-215 750.7 412 87.6
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 6.8e-213 744.2 522 73.9
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.8e-206 722.2 522 71.6
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.6e-204 715.7 491 67.4
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 2.1e-201 706.1 379 91.6
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 7.3e-191 671.0 526 62.2
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 8.1e-190 667.5 507 65.5
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 3.5e-185 652.1 419 79.5
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 3.9e-184 648.7 346 92.5
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 2.6e-180 636.0 344 90.1
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 5.8e-164 581.6 523 60.0
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 4.1e-157 558.9 355 78.6
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 9.3e-154 547.7 290 89.7
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 1.3e-152 543.9 484 54.5
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.8e-152 543.5 287 89.2
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 3.0e-144 516.2 275 92.7
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.9e-139 499.6 356 72.8
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 3.6e-137 492.7 510 51.8
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 2.8e-126 456.4 502 48.8
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 4.5e-124 449.1 285 80.0
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 4.3e-98 362.8 192 89.1
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 4.3e-82 309.7 409 41.1
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.5e-63 248.1 325 45.5
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 9.9e-63 245.4 362 43.4
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.9e-46 190.7 120 74.2
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 4.1e-40 170.2 93 87.1
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 7.4e-34 149.4 79 86.1
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 7.2e-29 132.9 93 65.6
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 9.4e-29 132.5 68 95.6
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 6.3e-17 93.2 77 62.3
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 2.4e-16 91.3 72 66.7
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 2.5e-13 81.3 125 43.2
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 1.8e-11 75.1 48 66.7
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 2.4e-08 64.7 35 80.0


User provided reference genes

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