Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 2.2e-88 328.9 171 100.0
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 1.6e-78 296.2 171 91.8
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 1.6e-73 279.6 173 90.2
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 1.8e-69 266.2 161 87.6
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 1.2e-62 243.4 161 80.7
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 8.9e-45 184.1 127 78.7
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 9.9e-44 180.6 163 56.4
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 4.9e-43 178.3 179 50.8
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 7.8e-41 171.0 164 54.9
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.3e-40 169.5 160 52.5
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.3e-40 169.5 160 52.5
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 6.6e-40 167.9 164 53.0
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 8.7e-40 167.5 164 54.3
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 1.9e-39 166.4 164 52.4
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 3.3e-39 165.6 164 51.8
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 7.3e-39 164.5 170 51.8
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 2.1e-38 162.9 164 51.2
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 2.8e-38 162.5 160 53.8
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 8.1e-38 161.0 164 51.2
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 1.4e-37 160.2 166 51.8
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 1.4e-37 160.2 162 51.9
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 2.4e-37 159.5 160 51.2
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 5.3e-37 158.3 162 51.9
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 6.9e-37 157.9 164 50.6
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 1.2e-36 157.1 167 49.7
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.2e-36 157.1 160 49.4
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 4.4e-36 155.2 164 51.2
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 5.8e-36 154.8 160 50.6
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 5.8e-36 154.8 160 51.2
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 9.9e-36 154.1 164 48.2
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 9.9e-36 154.1 162 50.6
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 1.3e-35 153.7 162 50.0
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 1.3e-35 153.7 163 48.5
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 1.7e-35 153.3 164 48.8
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 2.2e-35 152.9 160 50.0
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 2.9e-35 152.5 163 50.3
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 2.9e-35 152.5 164 51.8
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 3.8e-35 152.1 164 49.4
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 3.8e-35 152.1 162 51.9
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 6.4e-35 151.4 164 48.8
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 1.1e-34 150.6 164 48.8
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 1.1e-34 150.6 160 51.2
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 1.9e-34 149.8 162 52.5
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 2.4e-34 149.4 160 49.4
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 3.2e-34 149.1 160 48.1
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 3.2e-34 149.1 163 50.3
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 3.2e-34 149.1 164 47.6
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 3.2e-34 149.1 157 49.0
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 4.2e-34 148.7 164 48.2
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 5.4e-34 148.3 164 48.2
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 1.2e-33 147.1 160 50.0
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.6e-33 146.7 164 48.8
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 1.6e-33 146.7 168 46.4
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 1.6e-33 146.7 164 47.6
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 2.1e-33 146.4 164 50.0
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 4.6e-33 145.2 164 47.6
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 4.6e-33 145.2 160 49.4
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 6.0e-33 144.8 161 48.4
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 7.8e-33 144.4 163 49.7
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 7.8e-33 144.4 163 49.7
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 7.8e-33 144.4 156 48.7
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 1.0e-32 144.1 164 47.6
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-32 143.7 79 96.2
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 1.3e-32 143.7 164 46.3
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 1.7e-32 143.3 163 46.0
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 1.7e-32 143.3 164 46.3
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 3.0e-32 142.5 164 46.3
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 3.0e-32 142.5 164 47.6
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 3.0e-32 142.5 163 44.2
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 3.0e-32 142.5 163 49.1
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 3.9e-32 142.1 163 49.7
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 3.9e-32 142.1 163 49.7
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 3.9e-32 142.1 164 47.6
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 3.9e-32 142.1 164 48.8
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 3.9e-32 142.1 164 47.6
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 3.9e-32 142.1 159 50.3
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.1e-31 140.6 163 49.1
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 1.5e-31 140.2 164 45.7
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 1.5e-31 140.2 163 46.6
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 1.9e-31 139.8 164 45.7
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.9e-31 139.8 160 48.8
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 1.9e-31 139.8 164 45.7
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 1.9e-31 139.8 164 46.3
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 1.9e-31 139.8 164 45.7
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 5.6e-31 138.3 164 45.1
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 5.6e-31 138.3 164 45.1
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 5.6e-31 138.3 164 45.1
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 7.3e-31 137.9 163 47.9
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 1.3e-30 137.1 161 46.0
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 1.3e-30 137.1 159 49.1
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 1.3e-30 137.1 159 49.1
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 2.1e-30 136.3 164 44.5
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 2.1e-30 136.3 160 46.2
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 2.1e-30 136.3 160 45.6
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 2.1e-30 136.3 164 46.3
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 2.8e-30 136.0 164 46.3
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 3.6e-30 135.6 164 45.1
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 4.8e-30 135.2 173 45.7
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 8.1e-30 134.4 161 45.3
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 1.1e-29 134.0 160 45.6
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 1.1e-29 134.0 164 46.3
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 1.1e-29 134.0 164 47.6
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 1.4e-29 133.7 164 43.9
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 6.9e-29 131.3 165 44.2
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 6.9e-29 131.3 163 44.8
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 7.6e-28 127.9 160 41.2
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 1.9e-26 123.2 171 41.5
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 9.3e-26 120.9 145 45.5
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.9e-23 113.2 162 41.4
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.3e-22 110.5 164 38.4
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.3e-22 110.5 164 38.4
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 1.2e-20 104.0 227 34.4
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 8.4e-19 97.8 162 38.3
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.2e-12 77.4 54 63.0
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 1.7e-11 73.6 56 64.3
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.2e-11 73.2 54 66.7
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 8.4e-11 71.2 48 66.7
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.5e-10 69.7 156 35.3
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 3.2e-10 69.3 166 28.3
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 4.2e-10 68.9 171 31.6
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 4.2e-10 68.9 94 40.4
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 3.0e-08 62.8 167 28.1
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 3.3e-07 59.3 98 35.7


User provided reference genes

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