Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g08070 Coffea canephora HOM05D001577 ORTHO05D003311 1.7e-64 249.2 128 100.0
Cc04_g04650 Coffea canephora HOM05D001577 ORTHO05D003311 3.4e-57 224.9 118 97.5
Nitab4.5_0004013g0030 Nicotiana tabacum HOM05D001577 ORTHO05D003311 1.7e-32 142.9 119 68.1
Nitab4.5_0002322g0030 Nicotiana tabacum HOM05D001577 ORTHO05D003311 2.5e-31 139.0 118 66.1
CAN.G407.24 Capsicum annuum HOM05D001577 ORTHO05D003311 3.2e-31 138.7 120 65.8
Dinv38143 Davidia involucrata HOM05D001577 ORTHO05D003311 3.9e-29 131.7 118 61.0
Solyc03g117430.3 Solanum lycopersicum HOM05D001577 ORTHO05D003311 5.1e-29 131.3 119 63.9
Peaxi162Scf00332g00125 Petunia axillaris HOM05D001577 ORTHO05D003311 6.7e-29 131.0 118 65.3
Dinv30636 Davidia involucrata HOM05D001577 ORTHO05D003311 8.8e-29 130.6 120 58.3
CSS0031190 Camellia sinensis var. sinensis HOM05D001577 ORTHO05D003311 1.1e-28 130.2 118 61.9
Sopen03g036320 Solanum pennellii HOM05D001577 ORTHO05D003311 5.7e-28 127.9 119 62.2
PGSC0003DMG400014140 Solanum tuberosum HOM05D001577 ORTHO05D003311 3.7e-27 125.2 119 63.0
TAR625G0520 Trochodendron aralioides HOM05D001577 ORTHO05D003311 2.2e-24 115.9 118 57.6
TAR203G0002 Trochodendron aralioides HOM05D001577 ORTHO05D003311 3.8e-24 115.2 118 56.8
TAR677G0003 Trochodendron aralioides HOM05D001577 ORTHO05D003311 1.1e-23 113.6 118 55.9
Manes.04G108800 Manihot esculenta HOM05D001577 ORTHO05D003311 4.2e-23 111.7 120 53.3
CiPaw.02G158500 Carya illinoinensis HOM05D001577 ORTHO05D003311 3.6e-22 108.6 120 52.5
Migut.H01085 Erythranthe guttata HOM05D001577 ORTHO05D003311 8.0e-22 107.5 118 47.5
Migut.I00740 Erythranthe guttata HOM05D001577 ORTHO05D003311 8.0e-22 107.5 120 50.8
Cfa001936 Carpinus fangiana HOM05D001577 ORTHO05D003311 1.4e-21 106.7 119 52.9
Lj9A497G70 Lonicera japonica HOM05D001577 ORTHO05D003311 1.4e-21 106.7 126 53.2
Haze_16602 Corylus avellana HOM05D001577 ORTHO05D003311 5.2e-21 104.8 119 52.9
FAN14G4948 Fragaria x ananassa HOM05D001577 ORTHO05D003311 5.2e-21 104.8 118 54.2
SalBow2G2601 Salvia bowleyana HOM05D001577 ORTHO05D003311 1.5e-20 103.2 122 50.0
Ciclev10025584m.g Citrus clementina HOM05D001577 ORTHO05D003311 2.6e-20 102.4 118 52.5
FAN05G4470 Fragaria x ananassa HOM05D001577 ORTHO05D003311 2.6e-20 102.4 118 53.4
FAN09G1366 Fragaria x ananassa HOM05D001577 ORTHO05D003311 2.6e-20 102.4 118 53.4
Actinidia15975 Actinidia chinensis HOM05D001577 ORTHO05D003311 3.3e-20 102.1 118 53.4
FvH4_6g29200 Fragaria vesca HOM05D001577 ORTHO05D003311 3.3e-20 102.1 118 53.4
PGR102G1096 Punica granatum HOM05D001577 ORTHO05D003311 4.4e-20 101.7 118 48.3
Thecc.06G032900 Theobroma cacao HOM05D001577 ORTHO05D003311 4.4e-20 101.7 127 49.6
FAN02G4421 Fragaria x ananassa HOM05D001577 ORTHO05D003311 5.7e-20 101.3 118 52.5
Actinidia08956 Actinidia chinensis HOM05D001577 ORTHO05D003311 7.4e-20 100.9 118 54.2
COL.COLO4_11856 Corchorus olitorius HOM05D001577 ORTHO05D003311 9.7e-20 100.5 124 49.2
Eucgr.F03922 Eucalyptus grandis HOM05D001577 ORTHO05D003311 1.3e-19 100.1 121 52.1
Sc10g0008150 Simmondsia chinensis HOM05D001577 ORTHO05D003311 2.8e-19 99.0 122 50.8
Sc10g0008790 Simmondsia chinensis HOM05D001577 ORTHO05D003311 2.8e-19 99.0 122 50.8
GSVIVG01017471001 Vitis vinifera HOM05D001577 ORTHO05D003311 3.7e-19 98.6 121 52.9
Duzib192G0707 Durio zibethinus HOM05D001577 ORTHO05D003311 4.8e-19 98.2 123 48.8
RcHm_v2.0_Chr2g0134411 Rosa chinensis HOM05D001577 ORTHO05D003311 4.8e-19 98.2 123 52.0
TWI75G0004 Tripterygium wilfordii HOM05D001577 ORTHO05D003311 8.2e-19 97.4 121 46.3
PSO063G1245 Papaver somniferum HOM05D001577 ORTHO05D003311 1.1e-18 97.1 118 50.8
Duzib235G1216 Durio zibethinus HOM05D001577 ORTHO05D003311 1.8e-18 96.3 127 50.4
MD17G1216800 Malus domestica HOM05D001577 ORTHO05D003311 1.8e-18 96.3 122 48.4
Rhsim12G0189400 Rhododendron simsii HOM05D001577 ORTHO05D003311 1.8e-18 96.3 124 50.0
Gohir.D06G119900 Gossypium hirsutum HOM05D001577 ORTHO05D003311 2.4e-18 95.9 120 49.2
HanXRQChr16g0500271 Helianthus annuus HOM05D001577 ORTHO05D003311 4.1e-18 95.1 118 49.2
Lsat_1_v5_gn_4_88141 Lactuca sativa HOM05D001577 ORTHO05D003311 9.1e-18 94.0 122 45.9
MSTRG.22763 Avicennia marina HOM05D001577 ORTHO05D003311 1.6e-17 93.2 116 49.1
Gorai.010G137900 Gossypium raimondii HOM05D001577 ORTHO05D003311 1.6e-17 93.2 120 48.3
Prupe.3G092800 Prunus persica HOM05D001577 ORTHO05D003311 2.0e-17 92.8 120 51.7
Potri.003G030100 Populus trichocarpa HOM05D001577 ORTHO05D003311 2.6e-17 92.4 119 49.6
ClCG07G012280 Citrullus lanatus HOM05D001577 ORTHO05D003311 3.5e-17 92.0 119 47.9
VMungo0720G1904 Vigna mungo HOM05D001577 ORTHO05D003311 3.5e-17 92.0 116 45.7
Glyma.10G291200 Glycine max HOM05D001577 ORTHO05D003311 4.5e-17 91.7 116 45.7
Gohir.A06G115100 Gossypium hirsutum HOM05D001577 ORTHO05D003311 5.9e-17 91.3 121 46.3
QL05p032585 Quercus lobata HOM05D001577 ORTHO05D003311 5.9e-17 91.3 126 50.0
Aqoxy7G03597 Aquilegia oxysepala HOM05D001577 ORTHO05D003311 7.7e-17 90.9 134 45.5
arahy.Tifrunner.gnm1.ann1.JL5UQ6 Arachis hypogaea HOM05D001577 ORTHO05D003311 1.0e-16 90.5 115 47.0
CANSAT11G1306 Cannabis sativa HOM05D001577 ORTHO05D003311 2.9e-16 89.0 123 46.3
SGA_v2.0_scaffold37G14748 Striga asiatica HOM05D001577 ORTHO05D003311 2.9e-16 89.0 111 46.8
arahy.Tifrunner.gnm1.ann1.YKH51Y Arachis hypogaea HOM05D001577 ORTHO05D003311 5.0e-16 88.2 115 47.0
Glyma.20G240400 Glycine max HOM05D001577 ORTHO05D003311 6.5e-16 87.8 116 44.8
MBI15_g17558_MAGBIO Magnolia biondii HOM05D001577 ORTHO05D003311 1.1e-15 87.0 128 48.4
Sabra03G0016600 Salix brachista HOM05D001577 ORTHO05D003311 3.2e-15 85.5 118 44.9
CDE06G1779 Ceratophyllum demersum HOM05D001577 ORTHO05D003311 4.2e-15 85.1 121 43.8
Phvul.007G009700 Phaseolus vulgaris HOM05D001577 ORTHO05D003311 5.5e-15 84.7 116 43.1
PSO017G6632 Papaver somniferum HOM05D001577 ORTHO05D003311 2.1e-14 82.8 120 45.8
Psat6g237480 Pisum sativum HOM05D001577 ORTHO05D003311 2.1e-14 82.8 114 45.6
Carub.0002s2708 Capsella rubella HOM05D001577 ORTHO05D003311 2.7e-14 82.4 121 44.6
Sed0026189 Sechium edule HOM05D001577 ORTHO05D003311 2.7e-14 82.4 118 44.1
MELO3C017847.2 Cucumis melo HOM05D001577 ORTHO05D003311 8.0e-14 80.9 57 71.9
Potri.001G201400 Populus trichocarpa HOM05D001577 ORTHO05D003311 8.0e-14 80.9 120 45.0
Ca_11303_v3 Cicer arietinum L. HOM05D001577 ORTHO05D003311 1.0e-13 80.5 113 47.8
Nn8g39644 Nelumbo nucifera HOM05D001577 ORTHO05D003311 1.0e-13 80.5 119 43.7
Sp5g35320 Schrenkiella parvula HOM05D001577 ORTHO05D003311 1.0e-13 80.5 120 45.8
vmacro16875 Vaccinium macrocarpon HOM05D001577 ORTHO05D003311 1.0e-13 80.5 113 48.7
Lalb_Chr02g0143991 Lupinus albus HOM05D001577 ORTHO05D003311 3.0e-13 79.0 120 45.0
Cpa.g.sc10.141 Carica papaya HOM05D001577 ORTHO05D003311 4.0e-13 78.6 61 67.2
AUR62011482 Chenopodium quinoa HOM05D001577 ORTHO05D003311 4.0e-13 78.6 131 45.0
AUR62016294 Chenopodium quinoa HOM05D001577 ORTHO05D003311 4.0e-13 78.6 128 45.3
CsaV3_4G001870 Cucumis sativus L. HOM05D001577 ORTHO05D003311 4.0e-13 78.6 119 42.9
ATR0767G192 Amborella trichopoda HOM05D001577 ORTHO05D003311 5.2e-13 78.2 122 42.6
A02p23520 Brassica napus HOM05D001577 ORTHO05D003311 5.2e-13 78.2 57 68.4
BraA02t07345Z Brassica rapa HOM05D001577 ORTHO05D003311 5.2e-13 78.2 57 68.4
AT1G80480 Arabidopsis thaliana HOM05D001577 ORTHO05D003311 1.2e-12 77.0 122 45.9
Aa31LG4G750 Aethionema arabicum HOM05D001577 ORTHO05D003311 2.0e-12 76.3 126 43.7
EL10Ac9g21868 Beta vulgaris HOM05D001577 ORTHO05D003311 2.0e-12 76.3 121 47.9
Lj5g0010574 Lotus japonicus HOM05D001577 ORTHO05D003311 2.0e-12 76.3 50 72.0
CARHR074000 Cardamine hirsuta HOM05D001577 ORTHO05D003311 2.6e-12 75.9 100 48.0
Hund06545 Selenicereus undatus HOM05D001577 ORTHO05D003311 2.6e-12 75.9 120 40.0
Atru.chr1.2848 Acer truncatum HOM05D001577 ORTHO05D003311 3.4e-12 75.5 118 43.2
AL2G40990 Arabidopsis lyrata HOM05D001577 ORTHO05D003311 3.4e-12 75.5 119 43.7
unitig_0.g1111 Utricularia gibba HOM05D001577 ORTHO05D003311 7.5e-12 74.3 51 72.5
BcaB05g25265 Brassica carinata HOM05D001577 ORTHO05D003311 1.3e-11 73.6 123 43.9
BcaC03g15962 Brassica carinata HOM05D001577 ORTHO05D003311 1.3e-11 73.6 59 64.4
C02p37280 Brassica napus HOM05D001577 ORTHO05D003311 1.3e-11 73.6 59 64.4
BolC2t09738H Brassica oleracea HOM05D001577 ORTHO05D003311 1.3e-11 73.6 59 64.4
Thhalv10018560m.g Eutrema salsugineum HOM05D001577 ORTHO05D003311 2.2e-11 72.8 50 74.0
DCAR_021356 Daucus carota HOM05D001577 ORTHO05D003311 3.7e-11 72.0 69 55.1
Lalb_Chr06g0164211 Lupinus albus HOM05D001577 ORTHO05D003311 3.7e-11 72.0 51 70.6
Ciclev10027557m.g Citrus clementina HOM05D001577 ORTHO05D003311 1.4e-10 70.1 110 39.1
HPP92_015996 Vanilla planifolia HOM05D001577 ORTHO05D003311 1.4e-10 70.1 61 60.7
THA.LOC104813575 Tarenaya hassleriana HOM05D001577 ORTHO05D003311 4.5e-09 65.1 128 40.6
Thhalv10007622m.g Eutrema salsugineum HOM05D001577 ORTHO05D003311 5.9e-09 64.7 55 60.0
C05p13860 Brassica napus HOM05D001577 ORTHO05D003311 1.7e-08 63.2 65 55.4
BolC5t30121H Brassica oleracea HOM05D001577 ORTHO05D003311 1.7e-08 63.2 65 55.4
A06p11720 Brassica napus HOM05D001577 ORTHO05D003311 2.2e-08 62.8 70 52.9
BraA06t24344Z Brassica rapa HOM05D001577 ORTHO05D003311 2.2e-08 62.8 70 52.9
Sp1g14020 Schrenkiella parvula HOM05D001577 ORTHO05D003311 2.2e-08 62.8 118 40.7
CARHR016210 Cardamine hirsuta HOM05D001577 ORTHO05D003311 6.5e-08 61.2 54 61.1
Zm00001eb258070 Zea mays HOM05D001577 ORTHO05D003311 1.1e-07 60.5 35 82.9
AT1G15730 Arabidopsis thaliana HOM05D001577 ORTHO05D003311 1.9e-07 59.7 117 40.2
TPR.G14007 Trifolium pratense HOM05D001577 ORTHO05D003311 1.9e-07 59.7 31 87.1
Carub.0001s1550 Capsella rubella HOM05D001577 ORTHO05D003311 2.5e-07 59.3 54 61.1
Medtr1g115505 Medicago truncatula HOM05D001577 ORTHO05D003311 2.5e-07 59.3 31 87.1
SEGI_15702 Sequoiadendron giganteum HOM05D001577 ORTHO05D003311 4.2e-07 58.5 57 54.4
Os02g0800000 Oryza sativa ssp. japonica HOM05D001577 ORTHO05D003311 7.2e-07 57.8 27 96.3
CAN.G773.6 Capsicum annuum HOM05D001577 ORTHO05D003311 9.4e-07 57.4 38 68.4
Cc08_g04290 Coffea canephora HOM05D001577 ORTHO05D003311 1.2e-06 57.0 45 60.0
SalBow8G3231 Salvia bowleyana HOM05D001577 ORTHO05D003311 1.6e-06 56.6 56 51.8
AL1G27840 Arabidopsis lyrata HOM05D001577 ORTHO05D003311 2.1e-06 56.2 58 53.4
Carub.0007s2212 Capsella rubella HOM05D001577 ORTHO05D003311 2.7e-06 55.8 57 52.6
vmacro14219 Vaccinium macrocarpon HOM05D001577 ORTHO05D003311 4.7e-06 55.1 77 41.6
Nitab4.5_0000543g0030 Nicotiana tabacum HOM05D001577 ORTHO05D003311 6.1e-06 54.7 51 56.9
Potri.001G133500 Populus trichocarpa HOM05D001577 ORTHO05D003311 6.1e-06 54.7 54 57.4
Rhsim07G0136800 Rhododendron simsii HOM05D001577 ORTHO05D003311 6.1e-06 54.7 49 55.1
Aa31LG6G1740 Aethionema arabicum HOM05D001577 ORTHO05D003311 8.0e-06 54.3 42 64.3
ATR0829G088 Amborella trichopoda HOM05D001577 ORTHO05D003311 8.0e-06 54.3 44 61.4
Migut.E01336 Erythranthe guttata HOM05D001577 ORTHO05D003311 8.0e-06 54.3 51 56.9
PGSC0003DMG400009303 Solanum tuberosum HOM05D001577 ORTHO05D003311 8.0e-06 54.3 51 56.9
unitig_52.g17263 Utricularia gibba HOM05D001577 ORTHO05D003311 8.0e-06 54.3 59 45.8


User provided reference genes

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