Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 1.1e-273 946.0 468 100.0
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 5.9e-208 727.6 468 77.1
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.3e-207 726.5 456 77.0
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 8.6e-207 723.8 465 75.3
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 3.3e-206 721.8 456 76.5
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 9.5e-206 720.3 471 74.5
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 2.8e-205 718.8 468 75.6
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 4.7e-205 718.0 469 75.7
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 4.7e-205 718.0 469 75.7
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 1.4e-204 716.5 464 74.4
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 2.3e-204 715.7 458 76.0
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 2.0e-203 712.6 458 76.2
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.0e-203 712.6 456 75.4
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 3.4e-203 711.8 466 75.1
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.4e-203 711.4 463 74.9
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.4e-201 705.7 464 75.0
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 1.6e-200 703.0 466 74.5
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 1.6e-200 703.0 464 75.6
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 2.0e-200 702.6 466 73.6
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 4.6e-200 701.4 468 73.3
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.7e-199 699.5 511 69.7
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 1.7e-199 699.5 466 74.5
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 2.3e-199 699.1 425 78.8
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 2.3e-199 699.1 463 74.3
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 3.0e-199 698.7 468 72.9
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 3.0e-199 698.7 453 74.4
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.9e-199 698.4 453 73.5
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 6.6e-199 697.6 468 73.1
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 6.6e-199 697.6 466 73.2
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 1.1e-198 696.8 468 73.5
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 2.5e-198 695.7 465 73.3
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 5.6e-198 694.5 501 70.1
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 5.6e-198 694.5 467 73.7
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 7.3e-198 694.1 546 65.4
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 9.5e-198 693.7 466 73.4
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 1.2e-197 693.3 466 73.0
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.1e-197 692.6 466 73.6
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 8.0e-197 690.6 466 72.5
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.1e-196 690.3 472 72.9
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 1.1e-196 690.3 456 73.5
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 1.4e-196 689.9 468 72.6
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.4e-196 689.9 453 73.5
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.1e-196 688.7 466 73.6
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 6.8e-196 687.6 462 73.8
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 8.9e-196 687.2 466 73.6
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 2.6e-195 685.6 453 72.0
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 2.6e-195 685.6 462 73.8
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 2.6e-195 685.6 460 71.3
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 5.8e-195 684.5 463 72.4
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 9.8e-195 683.7 482 70.1
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 1.3e-194 683.3 489 69.7
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 3.7e-194 681.8 462 73.4
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 8.3e-194 680.6 458 72.7
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 8.3e-194 680.6 464 72.8
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 2.4e-193 679.1 461 72.5
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 4.6e-192 674.9 456 70.8
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 4.6e-192 674.9 455 71.9
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 7.8e-192 674.1 476 70.2
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 1.0e-191 673.7 437 74.4
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 3.9e-191 671.8 501 67.9
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 3.9e-191 671.8 442 73.8
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 6.6e-191 671.0 456 71.1
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 8.6e-191 670.6 462 70.8
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 1.1e-190 670.2 456 71.1
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.9e-190 669.5 427 75.4
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.9e-190 669.5 499 67.1
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 2.5e-190 669.1 466 71.0
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.3e-190 668.7 460 70.7
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 5.6e-190 667.9 463 70.6
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.2e-189 666.8 452 71.2
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 3.6e-189 665.2 456 70.4
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 6.2e-189 664.5 481 69.2
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 8.1e-189 664.1 430 73.7
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 4.0e-188 661.8 456 70.6
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 8.9e-188 660.6 461 70.5
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 1.5e-187 659.8 466 68.5
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 3.4e-187 658.7 456 70.4
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 5.8e-187 657.9 452 71.2
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 7.5e-187 657.5 454 70.3
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 7.5e-187 657.5 430 74.2
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 1.7e-186 656.4 460 70.7
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.2e-186 656.0 458 70.1
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 4.9e-186 654.8 456 69.7
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 4.9e-186 654.8 466 68.0
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 6.4e-186 654.4 449 70.4
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 1.4e-185 653.3 484 67.1
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 1.9e-185 652.9 461 69.2
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.9e-185 652.9 467 69.2
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 9.2e-185 650.6 462 70.8
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.2e-184 650.2 462 69.3
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 4.6e-184 648.3 597 58.3
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.0e-183 645.6 460 69.1
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 3.1e-180 635.6 462 67.5
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 1.2e-179 633.6 455 69.0
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 5.1e-175 618.2 373 77.2
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 6.6e-175 617.8 459 66.2
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 3.3e-174 615.5 424 68.4
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 2.0e-171 606.3 458 64.2
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 7.1e-169 597.8 362 78.7
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.5e-168 595.5 377 75.6
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 1.5e-166 590.1 386 74.9
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 3.0e-159 565.8 364 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 7.6e-155 551.2 440 62.0
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 3.5e-152 542.3 402 69.2
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 3.3e-150 535.8 451 60.3
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 1.1e-148 530.8 479 58.7
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 6.5e-146 521.5 460 57.0
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.0e-143 514.2 463 57.2
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 1.6e-141 506.9 450 58.4
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 1.7e-130 470.3 377 63.9
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 2.9e-130 469.5 285 79.3
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 3.8e-130 469.2 444 54.3
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 2.6e-123 446.4 281 75.4
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 3.0e-119 433.0 446 53.1
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 1.1e-118 431.0 281 71.5
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 4.1e-108 396.0 496 46.2
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 2.3e-103 380.2 257 70.4
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 3.5e-99 366.3 447 45.4
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 5.5e-97 359.0 256 68.8
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 5.2e-95 352.4 541 40.9
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.7e-93 346.3 253 69.6
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 2.9e-90 336.7 455 40.9
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.3e-82 311.2 253 63.6
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.7e-82 310.8 247 64.4
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 2.1e-67 260.8 237 58.6
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 9.9e-62 241.9 166 67.5
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 1.7e-61 241.1 195 64.6
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 6.4e-61 239.2 184 66.8
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.3e-57 226.5 184 61.4
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.4e-52 210.7 161 64.0
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 2.4e-52 210.7 237 51.1
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 7.1e-52 209.1 164 66.5
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.3e-41 173.7 119 72.3
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.1e-36 158.7 116 63.8
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 5.5e-36 156.4 117 65.8
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 1.2e-35 155.2 105 76.2
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.7e-35 154.1 108 70.4
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 1.9e-33 147.9 110 65.5
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 4.8e-32 143.3 107 68.2
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 5.9e-30 136.3 345 30.7
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 6.5e-29 132.9 91 73.6
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 6.7e-26 122.9 100 61.0
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.3e-25 120.6 95 60.0
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 1.0e-18 99.0 108 52.8
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 2.0e-17 94.7 71 69.0
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 2.0e-17 94.7 71 69.0
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 2.0e-17 94.7 71 69.0
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 2.8e-16 90.9 96 52.1
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 1.1e-15 89.0 65 63.1
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 3.4e-14 84.0 65 60.0
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 4.5e-14 83.6 323 26.0
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 5.5e-12 76.6 44 79.5
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 2.7e-11 74.3 68 57.4
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 8.8e-10 69.3 60 56.7
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 1.5e-09 68.6 42 73.8
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 4.8e-08 63.5 263 28.9
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 4.8e-08 63.5 149 34.9
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.1e-07 62.4 296 26.7
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 1.4e-07 62.0 273 26.7
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.4e-07 62.0 47 66.0
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 4.1e-07 60.5 43 69.8
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 5.3e-07 60.1 299 26.4
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 1.6e-06 58.5 41 65.9
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 3.5e-06 57.4 423 22.9
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 4.5e-06 57.0 137 35.8
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 7.7e-06 56.2 42 64.3


User provided reference genes

Program Settings