Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.1e-187 659.8 335 100.0
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.6e-90 337.0 238 69.7
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 3.6e-90 335.9 239 69.9
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 6.4e-87 325.1 240 66.7
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 8.3e-87 324.7 237 65.8
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.2e-85 320.9 249 63.9
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.6e-85 320.5 240 65.4
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 3.5e-85 319.3 239 66.5
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 3.0e-84 316.2 240 63.8
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.5e-83 313.9 230 65.2
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.5e-83 313.9 240 63.3
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.5e-83 313.2 239 63.2
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.6e-82 309.3 239 62.8
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 4.7e-82 308.9 239 61.5
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 8.0e-82 308.1 239 62.3
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 8.0e-82 308.1 240 62.5
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.4e-81 307.4 233 62.2
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.8e-81 307.0 267 57.7
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.5e-80 303.9 239 61.9
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 3.4e-80 302.8 240 60.8
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.4e-78 297.4 241 59.8
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.4e-78 297.4 231 62.8
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.9e-78 297.0 238 60.1
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.0e-78 295.0 240 60.4
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 2.0e-77 293.5 238 61.3
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.7e-77 293.1 241 60.2
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 6.0e-77 292.0 241 60.2
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 6.0e-77 292.0 280 54.3
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 6.0e-77 292.0 238 61.3
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 7.8e-77 291.6 257 57.6
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.0e-76 288.9 233 62.2
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.6e-76 288.5 240 59.2
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-75 287.7 242 60.3
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 3.3e-75 286.2 240 57.1
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 5.6e-75 285.4 240 59.2
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 5.6e-75 285.4 230 58.3
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 7.3e-75 285.0 232 58.6
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 8.1e-74 281.6 298 51.7
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.8e-73 280.4 296 52.4
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.8e-73 280.4 241 60.6
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 5.2e-73 278.9 232 57.8
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 5.2e-73 278.9 233 58.8
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.2e-72 277.7 240 56.2
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.6e-72 276.6 224 59.4
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 5.8e-72 275.4 233 57.9
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 2.2e-71 273.5 240 56.7
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.7e-71 272.7 240 56.7
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.9e-71 272.3 242 55.8
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 6.4e-71 271.9 200 62.5
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 8.3e-71 271.6 233 57.1
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 5.1e-68 262.3 240 52.5
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 6.6e-68 261.9 213 61.5
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 6.6e-68 261.9 213 61.5
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.9e-67 260.4 242 52.9
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.3e-67 259.6 236 54.7
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 7.3e-67 258.5 198 62.1
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 9.5e-67 258.1 246 51.6
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 9.5e-67 258.1 236 53.8
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.2e-66 257.7 244 51.6
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.2e-66 257.7 230 57.8
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 2.1e-66 256.9 241 51.0
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.7e-66 255.8 230 51.3
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 4.7e-66 255.8 240 52.9
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 6.2e-66 255.4 236 53.4
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-65 254.2 245 50.6
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-65 254.2 245 50.6
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.4e-65 253.4 211 60.2
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 2.4e-65 253.4 200 59.5
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 3.1e-65 253.1 244 50.8
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 4.4e-64 249.2 242 52.5
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 4.4e-64 249.2 232 56.0
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 6.4e-63 245.4 232 52.6
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.1e-62 244.6 236 50.4
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.1e-62 244.6 239 50.6
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.9e-62 243.8 225 51.6
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.4e-62 242.3 232 51.3
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 9.2e-62 241.5 231 51.9
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.2e-61 241.1 236 50.8
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.6e-61 240.7 232 50.0
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 2.7e-61 240.0 236 48.7
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.7e-61 240.0 245 48.6
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.5e-61 239.6 240 49.2
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.0e-61 238.8 240 49.2
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 7.8e-61 238.4 240 49.2
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-60 237.7 240 48.8
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 1.3e-60 237.7 232 53.0
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.5e-59 233.4 238 50.0
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.3e-59 233.0 230 47.8
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 2.1e-58 230.3 234 49.6
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 4.7e-58 229.2 240 48.3
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.1e-57 228.0 237 48.9
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.8e-57 227.3 236 50.8
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 9.0e-57 224.9 171 67.3
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.5e-56 224.2 216 49.5
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 4.4e-56 222.6 231 46.3
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 4.4e-56 222.6 243 47.7
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 5.8e-56 222.2 236 48.3
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.1e-54 218.0 240 46.2
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.1e-54 218.0 242 49.6
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 1.4e-54 217.6 147 69.4
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.4e-54 217.6 242 46.3
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.9e-54 217.2 240 47.1
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 3.2e-54 216.5 233 45.9
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 7.1e-54 215.3 152 67.8
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 2.1e-53 213.8 240 46.7
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 7.8e-53 211.8 232 43.1
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 7.8e-53 211.8 232 43.1
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 7.8e-53 211.8 233 48.5
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.7e-52 210.7 240 45.0
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 2.3e-52 210.3 232 42.7
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.3e-52 210.3 217 50.7
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 3.9e-52 209.5 233 45.9
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.9e-52 209.5 241 44.8
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 5.1e-52 209.1 232 42.7
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 5.1e-52 209.1 232 42.7
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.1e-51 208.0 165 60.0
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.9e-51 207.2 232 41.8
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.9e-51 207.2 231 41.1
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.5e-51 206.8 217 47.9
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 7.3e-51 205.3 235 43.0
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 9.0e-49 198.4 154 60.4
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.4e-48 196.4 145 64.8
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 9.9e-48 194.9 238 43.3
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.7e-47 194.1 234 44.4
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.9e-47 193.4 236 46.6
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 3.8e-47 193.0 216 44.9
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 8.4e-47 191.8 234 42.7
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.1e-46 191.4 180 53.9
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.4e-46 191.0 234 42.3
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.2e-45 188.0 154 56.5
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.2e-45 188.0 234 43.6
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.6e-45 187.6 192 49.0
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.6e-45 187.6 238 43.7
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 1.0e-44 184.9 235 42.6
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.3e-44 184.5 192 47.9
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 2.3e-44 183.7 234 42.7
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 5.1e-44 182.6 235 41.7
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 6.7e-44 182.2 223 43.5
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.5e-43 181.0 226 41.2
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 1.3e-42 177.9 234 41.9
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 6.2e-42 175.6 238 41.2
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 4.0e-41 172.9 240 41.7
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 5.3e-41 172.6 233 43.3
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 5.3e-41 172.6 233 43.3
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 9.0e-41 171.8 231 38.1
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 1.2e-40 171.4 230 40.4
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 1.5e-40 171.0 178 46.6
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 2.6e-40 170.2 221 36.7
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.4e-40 169.9 214 37.4
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.8e-39 166.4 154 48.7
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 8.4e-39 165.2 217 38.2
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.5e-35 153.7 219 42.9
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 2.5e-35 153.7 122 59.0
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 6.9e-33 145.6 235 33.6
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 2.9e-31 140.2 118 55.9
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.4e-30 137.9 210 35.2
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-30 137.9 139 46.0
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 1.9e-30 137.5 113 59.3
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.9e-30 137.5 191 35.1
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.7e-28 128.6 210 40.5
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.8e-26 122.9 91 60.4
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 7.6e-24 115.5 136 50.0
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 1.7e-23 114.4 80 66.2
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.4e-22 111.3 146 44.5
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.2e-21 108.2 226 35.4
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.0e-20 103.6 128 45.3
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 6.7e-20 102.4 91 50.5
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.1e-19 101.7 88 48.9
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.3e-18 98.2 92 47.8
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.5e-16 91.3 196 34.2
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 5.0e-15 86.3 80 48.8
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 8.5e-15 85.5 78 53.8
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 1.6e-13 81.3 172 27.3
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 2.3e-12 77.4 103 47.6
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 2.3e-12 77.4 99 37.4
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 2.3e-12 77.4 99 37.4
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.5e-11 74.7 76 55.3
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 3.3e-11 73.6 54 59.3
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.8e-10 70.5 94 35.1
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.7e-10 70.1 73 49.3
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 7.0e-09 65.9 78 35.9


User provided reference genes

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