Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g04530 Coffea canephora HOM05D002990 ORTHO05D025120 2.0e-112 409.1 202 100.0
Cc00_g30140 Coffea canephora HOM05D002990 ORTHO05D025120 4.3e-62 241.9 162 81.5
Cc00_g35830 Coffea canephora HOM05D002990 ORTHO05D025120 1.6e-53 213.4 136 83.1
Cc02_g23240 Coffea canephora HOM05D002990 ORTHO05D003954 1.9e-25 120.2 63 95.2
TAR628G0664 Trochodendron aralioides HOM05D002990 ORTHO05D003954 1.4e-20 104.0 63 82.5
GSVIVG01012108001 Vitis vinifera HOM05D002990 ORTHO05D003954 5.3e-20 102.1 63 81.0
CSS0019515 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 6.9e-20 101.7 63 79.4
Lj5C267G4 Lonicera japonica HOM05D002990 ORTHO05D003954 6.9e-20 101.7 63 82.5
CSS0049984 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 9.0e-20 101.3 63 77.8
Manes.01G123400 Manihot esculenta HOM05D002990 ORTHO05D003954 1.5e-19 100.5 63 77.8
DCAR_001748 Daucus carota HOM05D002990 ORTHO05D003954 2.0e-19 100.1 63 79.4
Rhsim05G0113900 Rhododendron simsii HOM05D002990 ORTHO05D003954 2.0e-19 100.1 63 77.8
Actinidia01610 Actinidia chinensis HOM05D002990 ORTHO05D003954 2.6e-19 99.8 63 77.8
ECA248G3257 Erigeron canadensis HOM05D002990 ORTHO05D003954 2.6e-19 99.8 63 77.8
MD17G1280500 Malus domestica HOM05D002990 ORTHO05D003954 2.6e-19 99.8 63 79.4
Rhsim02G0096400 Rhododendron simsii HOM05D002990 ORTHO05D003954 2.6e-19 99.8 63 76.2
Oeu045917.5 Olea europaea HOM05D002990 ORTHO05D003954 3.4e-19 99.4 63 77.8
Dinv19419 Davidia involucrata HOM05D002990 ORTHO05D003954 4.5e-19 99.0 63 81.0
CAN.G855.9 Capsicum annuum HOM05D002990 ORTHO05D003954 5.8e-19 98.6 63 76.2
Lj9C298T10 Lonicera japonica HOM05D002990 ORTHO05D003954 5.8e-19 98.6 63 79.4
PSO210G5298 Papaver somniferum HOM05D002990 ORTHO05D003954 5.8e-19 98.6 63 77.8
vmacro15752 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 5.8e-19 98.6 63 74.6
vmacro19861 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 5.8e-19 98.6 63 76.2
Manes.02G080900 Manihot esculenta HOM05D002990 ORTHO05D003954 7.6e-19 98.2 63 76.2
PGR004G2876 Punica granatum HOM05D002990 ORTHO05D003954 1.0e-18 97.8 63 77.8
PGR065G0001 Punica granatum HOM05D002990 ORTHO05D003954 1.0e-18 97.8 63 77.8
TAR381G1467 Trochodendron aralioides HOM05D002990 ORTHO05D003954 1.0e-18 97.8 63 77.8
Atru.chr10.452 Acer truncatum HOM05D002990 ORTHO05D003954 1.7e-18 97.1 63 77.8
Prupe.3G005000 Prunus persica HOM05D002990 ORTHO05D003954 1.7e-18 97.1 63 79.4
Aqoxy3G02903 Aquilegia oxysepala HOM05D002990 ORTHO05D003954 2.2e-18 96.7 63 76.2
PSO832G0554 Papaver somniferum HOM05D002990 ORTHO05D003954 2.2e-18 96.7 63 76.2
AUR62016395 Chenopodium quinoa HOM05D002990 ORTHO05D003954 2.9e-18 96.3 63 76.2
PGR042G1192 Punica granatum HOM05D002990 ORTHO05D003954 2.9e-18 96.3 63 76.2
Solyc10g038120.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 2.9e-18 96.3 63 77.8
Gohir.A12G047200 Gossypium hirsutum HOM05D002990 ORTHO05D003954 3.8e-18 95.9 63 76.2
Gohir.D12G046000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 3.8e-18 95.9 63 76.2
Gorai.008G048600 Gossypium raimondii HOM05D002990 ORTHO05D003954 3.8e-18 95.9 63 76.2
Nitab4.5_0006171g0030 Nicotiana tabacum HOM05D002990 ORTHO05D003954 3.8e-18 95.9 63 74.6
ClCG10G021340 Citrullus lanatus HOM05D002990 ORTHO05D003954 4.9e-18 95.5 84 61.9
Nitab4.5_0000667g0050 Nicotiana tabacum HOM05D002990 ORTHO05D003954 4.9e-18 95.5 63 77.8
Potri.012G125500 Populus trichocarpa HOM05D002990 ORTHO05D003954 4.9e-18 95.5 63 76.2
Duzib248G1041 Durio zibethinus HOM05D002990 ORTHO05D003954 6.5e-18 95.1 63 76.2
Eucgr.E04296 Eucalyptus grandis HOM05D002990 ORTHO05D003954 6.5e-18 95.1 63 76.2
FvH4_5g25700 Fragaria vesca HOM05D002990 ORTHO05D003954 6.5e-18 95.1 63 77.8
FAN04G1958 Fragaria x ananassa HOM05D002990 ORTHO05D003954 6.5e-18 95.1 63 77.8
FAN08G0961 Fragaria x ananassa HOM05D002990 ORTHO05D003954 6.5e-18 95.1 63 77.8
FAN13G0995 Fragaria x ananassa HOM05D002990 ORTHO05D003954 6.5e-18 95.1 63 77.8
RcHm_v2.0_Chr7g0216031 Rosa chinensis HOM05D002990 ORTHO05D003954 6.5e-18 95.1 63 77.8
Sopen10g011180 Solanum pennellii HOM05D002990 ORTHO05D003954 6.5e-18 95.1 63 76.2
Gohir.D01G132400 Gossypium hirsutum HOM05D002990 ORTHO05D003954 8.4e-18 94.7 65 75.4
HanXRQChr06g0181631 Helianthus annuus HOM05D002990 ORTHO05D003954 8.4e-18 94.7 63 74.6
Nn5g27504 Nelumbo nucifera HOM05D002990 ORTHO05D003954 8.4e-18 94.7 61 77.0
TWI63G1786 Tripterygium wilfordii HOM05D002990 ORTHO05D003954 8.4e-18 94.7 63 73.0
MELO3C009240.2 Cucumis melo HOM05D002990 ORTHO05D003954 1.1e-17 94.4 63 74.6
Gorai.002G164000 Gossypium raimondii HOM05D002990 ORTHO05D003954 1.1e-17 94.4 65 75.4
HanXRQChr11g0350821 Helianthus annuus HOM05D002990 ORTHO05D003954 1.1e-17 94.4 63 73.0
Peaxi162Scf00011g01423 Petunia axillaris HOM05D002990 ORTHO05D003954 1.1e-17 94.4 63 74.6
Hund09109 Selenicereus undatus HOM05D002990 ORTHO05D003954 1.1e-17 94.4 63 74.6
ClCG01G022800 Citrullus lanatus HOM05D002990 ORTHO05D003954 1.4e-17 94.0 63 74.6
Gohir.A01G141326 Gossypium hirsutum HOM05D002990 ORTHO05D003954 1.4e-17 94.0 65 75.4
Gohir.A11G227300 Gossypium hirsutum HOM05D002990 ORTHO05D003954 1.4e-17 94.0 63 74.6
Gohir.D11G230000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 1.4e-17 94.0 63 74.6
Gorai.003G067800 Gossypium raimondii HOM05D002990 ORTHO05D003954 1.4e-17 94.0 63 74.6
Nitab4.5_0000787g0120 Nicotiana tabacum HOM05D002990 ORTHO05D003954 1.4e-17 94.0 61 73.8
Cpa.g.sc30.148 Carica papaya HOM05D002990 ORTHO05D003954 1.9e-17 93.6 63 73.0
CsaV3_6G049970 Cucumis sativus L. HOM05D002990 ORTHO05D003954 1.9e-17 93.6 63 76.2
Nitab4.5_0001144g0080 Nicotiana tabacum HOM05D002990 ORTHO05D003954 1.9e-17 93.6 61 77.0
Sed0007199 Sechium edule HOM05D002990 ORTHO05D003954 1.9e-17 93.6 63 74.6
TAR625G1487 Trochodendron aralioides HOM05D002990 ORTHO05D003954 1.9e-17 93.6 62 71.0
Ah.01g020920 Amaranthus hybridus HOM05D002990 ORTHO05D003954 2.5e-17 93.2 63 71.4
MBI14_g22163_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 2.5e-17 93.2 63 71.4
MSTRG.27863 Avicennia marina HOM05D002990 ORTHO05D003954 3.2e-17 92.8 63 69.8
CsaV3_3G034710 Cucumis sativus L. HOM05D002990 ORTHO05D003954 4.2e-17 92.4 63 73.0
Glyma.12G040500 Glycine max HOM05D002990 ORTHO05D003954 4.2e-17 92.4 63 69.8
Solyc01g103480.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 4.2e-17 92.4 63 69.8
SGA_v2.0_scaffold272G46387 Striga asiatica HOM05D002990 ORTHO05D003954 4.2e-17 92.4 63 73.0
THA.LOC104823159 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 4.2e-17 92.4 63 73.0
MSTRG.16488 Avicennia marina HOM05D002990 ORTHO05D003954 5.5e-17 92.0 63 73.0
Ca_25659_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 5.5e-17 92.0 63 74.6
COL.COLO4_17647 Corchorus olitorius HOM05D002990 ORTHO05D003954 7.1e-17 91.7 63 69.8
Duzib132G0187 Durio zibethinus HOM05D002990 ORTHO05D003954 7.1e-17 91.7 63 74.6
Lalb_Chr03g0036401 Lupinus albus HOM05D002990 ORTHO05D003954 7.1e-17 91.7 63 74.6
Lalb_Chr06g0166381 Lupinus albus HOM05D002990 ORTHO05D003954 7.1e-17 91.7 63 73.0
PSO017G7401 Papaver somniferum HOM05D002990 ORTHO05D003954 7.1e-17 91.7 63 73.0
PSO675G6402 Papaver somniferum HOM05D002990 ORTHO05D003954 7.1e-17 91.7 63 73.0
Peaxi162Scf00150g01615 Petunia axillaris HOM05D002990 ORTHO05D003954 7.1e-17 91.7 63 74.6
PGSC0003DMG400024913 Solanum tuberosum HOM05D002990 ORTHO05D003954 7.1e-17 91.7 63 68.3
arahy.Tifrunner.gnm1.ann1.36FIU4 Arachis hypogaea HOM05D002990 ORTHO05D003954 9.3e-17 91.3 63 73.0
arahy.Tifrunner.gnm1.ann1.MNY5KW Arachis hypogaea HOM05D002990 ORTHO05D003954 9.3e-17 91.3 63 73.0
Migut.B00765 Erythranthe guttata HOM05D002990 ORTHO05D003954 9.3e-17 91.3 63 73.0
Lalb_Chr02g0146241 Lupinus albus HOM05D002990 ORTHO05D003954 9.3e-17 91.3 63 73.0
Sc17g0007790 Simmondsia chinensis HOM05D002990 ORTHO05D003954 9.3e-17 91.3 63 71.4
Sopen01g045840 Solanum pennellii HOM05D002990 ORTHO05D003954 9.3e-17 91.3 63 68.3
Thecc.02G008000 Theobroma cacao HOM05D002990 ORTHO05D003954 9.3e-17 91.3 63 69.8
TPR.G2492 Trifolium pratense HOM05D002990 ORTHO05D003954 1.2e-16 90.9 63 73.0
CDE07G1838 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 1.6e-16 90.5 63 68.3
Ca_25658_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 1.6e-16 90.5 63 71.4
Sed0013419 Sechium edule HOM05D002990 ORTHO05D003954 1.6e-16 90.5 63 71.4
SEGI_30717 Sequoiadendron giganteum HOM05D002990 ORTHO05D003954 1.6e-16 90.5 63 69.8
Zm00001eb138410 Zea mays HOM05D002990 ORTHO05D003954 1.6e-16 90.5 63 74.6
Zm00001eb411050 Zea mays HOM05D002990 ORTHO05D003954 1.6e-16 90.5 63 74.6
MSTRG.5205 Avicennia marina HOM05D002990 ORTHO05D003954 2.1e-16 90.1 63 69.8
Potri.015G125400 Populus trichocarpa HOM05D002990 ORTHO05D003954 2.1e-16 90.1 63 71.4
Sabra15G0139800 Salix brachista HOM05D002990 ORTHO05D003954 2.1e-16 90.1 63 69.8
EL10Ac9g21942 Beta vulgaris HOM05D002990 ORTHO05D003954 2.7e-16 89.7 63 71.4
Cpa.g.sc30.147 Carica papaya HOM05D002990 ORTHO05D003954 2.7e-16 89.7 63 71.4
Migut.N00842 Erythranthe guttata HOM05D002990 ORTHO05D003954 2.7e-16 89.7 63 69.8
QL11p013908 Quercus lobata HOM05D002990 ORTHO05D003954 2.7e-16 89.7 62 67.7
QL11p014419 Quercus lobata HOM05D002990 ORTHO05D003954 2.7e-16 89.7 62 67.7
Ah.06g187310 Amaranthus hybridus HOM05D002990 ORTHO05D003954 4.6e-16 89.0 63 69.8
Haze_16449 Corylus avellana HOM05D002990 ORTHO05D003954 4.6e-16 89.0 63 69.8
Phvul.007G023200 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 4.6e-16 89.0 63 71.4
VMungo0720G1386 Vigna mungo HOM05D002990 ORTHO05D003954 4.6e-16 89.0 63 71.4
CANSAT35G0772 Cannabis sativa HOM05D002990 ORTHO05D003954 6.0e-16 88.6 63 69.8
CiPaw.05G047800 Carya illinoinensis HOM05D002990 ORTHO05D003954 6.0e-16 88.6 63 68.3
Psat3g059840 Pisum sativum HOM05D002990 ORTHO05D003954 6.0e-16 88.6 63 69.8
SGA_v2.0_scaffold456G51925 Striga asiatica HOM05D002990 ORTHO05D003954 6.0e-16 88.6 63 69.8
arahy.Tifrunner.gnm1.ann1.SXBZ4U Arachis hypogaea HOM05D002990 ORTHO05D003954 7.9e-16 88.2 63 69.8
arahy.Tifrunner.gnm1.ann1.VAK2YC Arachis hypogaea HOM05D002990 ORTHO05D003954 7.9e-16 88.2 63 69.8
Glyma.20G111200 Glycine max HOM05D002990 ORTHO05D003954 7.9e-16 88.2 63 71.4
Lsat_1_v5_gn_1_50861 Lactuca sativa HOM05D002990 ORTHO05D003954 7.9e-16 88.2 67 68.7
Lalb_Chr21g0309131 Lupinus albus HOM05D002990 ORTHO05D003954 7.9e-16 88.2 63 73.0
Psat0s1904g0080 Pisum sativum HOM05D002990 ORTHO05D003954 7.9e-16 88.2 63 68.3
Sabra12G0094700 Salix brachista HOM05D002990 ORTHO05D003954 7.9e-16 88.2 73 65.8
Haze_04601 Corylus avellana HOM05D002990 ORTHO05D003954 1.0e-15 87.8 63 68.3
Glyma.11G114600 Glycine max HOM05D002990 ORTHO05D003954 1.0e-15 87.8 63 68.3
MBI19_g42889_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 1.0e-15 87.8 63 68.3
Rhsim05G0202100 Rhododendron simsii HOM05D002990 ORTHO05D025120 1.0e-15 87.8 60 71.7
TPR.G6118 Trifolium pratense HOM05D002990 ORTHO05D003954 1.0e-15 87.8 63 69.8
Lj5g0007499 Lotus japonicus HOM05D002990 ORTHO05D003954 1.3e-15 87.4 63 71.4
MD09G1288200 Malus domestica HOM05D002990 ORTHO05D003954 1.3e-15 87.4 57 75.4
Medtr1g111900 Medicago truncatula HOM05D002990 ORTHO05D003954 1.3e-15 87.4 62 71.0
CiPaw.10G063800 Carya illinoinensis HOM05D002990 ORTHO05D003954 1.8e-15 87.0 63 68.3
Psat0s1904g0040 Pisum sativum HOM05D002990 ORTHO05D003954 1.8e-15 87.0 63 69.8
unitig_747.g21275 Utricularia gibba HOM05D002990 ORTHO05D003954 1.8e-15 87.0 63 65.1
Lj5g0018242 Lotus japonicus HOM05D002990 ORTHO05D003954 2.3e-15 86.7 63 69.8
Os05g0311000 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 3.0e-15 86.3 63 68.3
Glyma.10G278200 Glycine max HOM05D002990 ORTHO05D003954 3.9e-15 85.9 63 68.3
QL02p098931 Quercus lobata HOM05D002990 ORTHO05D003954 3.9e-15 85.9 62 67.7
VMungo1127G2180 Vigna mungo HOM05D002990 ORTHO05D003954 3.9e-15 85.9 63 68.3
Medtr2g101180 Medicago truncatula HOM05D002990 ORTHO05D003954 5.1e-15 85.5 63 66.7
Sc09g0003570 Simmondsia chinensis HOM05D002990 ORTHO05D003954 6.7e-15 85.1 56 69.6
Os05g0310800 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 1.1e-14 84.3 63 66.7
MBI15_g43444_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 1.5e-14 84.0 75 61.3
MBI19_g28319_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 1.9e-14 83.6 64 67.2
THA.LOC104826886 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 1.9e-14 83.6 63 66.7
Lsat_1_v5_gn_2_24380 Lactuca sativa HOM05D002990 ORTHO05D003954 2.5e-14 83.2 54 74.1
Medtr1g111910 Medicago truncatula HOM05D002990 ORTHO05D003954 3.3e-14 82.8 63 69.8
Carub.0006s0395 Capsella rubella HOM05D002990 ORTHO05D003954 7.4e-14 81.6 65 64.6
Os01g0833700 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 2.8e-13 79.7 63 65.1
AL6G14720 Arabidopsis lyrata HOM05D002990 ORTHO05D003954 3.7e-13 79.3 65 61.5
CARHR277810 Cardamine hirsuta HOM05D002990 ORTHO05D003954 4.8e-13 79.0 66 62.1
Phvul.011G042400 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 4.8e-13 79.0 63 63.5
Aa31LG11G5670 Aethionema arabicum HOM05D002990 ORTHO05D003954 6.2e-13 78.6 65 64.6
BcaB05g21739 Brassica carinata HOM05D002990 ORTHO05D003954 6.2e-13 78.6 66 62.1
BcaC06g32216 Brassica carinata HOM05D002990 ORTHO05D003954 1.1e-12 77.8 65 61.5
BolC9t59926H Brassica oleracea HOM05D002990 ORTHO05D003954 1.1e-12 77.8 65 61.5
AT5G05010 Arabidopsis thaliana HOM05D002990 ORTHO05D003954 1.4e-12 77.4 65 60.0
BcaC03g13141 Brassica carinata HOM05D002990 ORTHO05D003954 1.4e-12 77.4 65 61.5
C02p02130 Brassica napus HOM05D002990 ORTHO05D003954 1.4e-12 77.4 65 61.5
BolC2t06181H Brassica oleracea HOM05D002990 ORTHO05D003954 1.4e-12 77.4 65 61.5
AUR62023824 Chenopodium quinoa HOM05D002990 ORTHO05D003954 1.8e-12 77.0 63 60.3
Sp6g37790 Schrenkiella parvula HOM05D002990 ORTHO05D003954 1.8e-12 77.0 65 61.5
CARHR208250 Cardamine hirsuta HOM05D002990 ORTHO05D003954 5.3e-12 75.5 65 60.0
BraA02t04830Z Brassica rapa HOM05D002990 ORTHO05D003954 6.9e-12 75.1 65 60.0
Thhalv10013243m.g Eutrema salsugineum HOM05D002990 ORTHO05D003954 9.0e-12 74.7 65 58.5
Pp3c20_16550 Physcomitrium patens HOM05D002990 ORTHO05D003954 1.5e-11 73.9 63 58.7
Pp3c23_8750 Physcomitrium patens HOM05D002990 ORTHO05D003954 2.6e-11 73.2 63 57.1
A03p02050 Brassica napus HOM05D002990 ORTHO05D003954 3.4e-11 72.8 64 59.4
C03p02400 Brassica napus HOM05D002990 ORTHO05D003954 3.4e-11 72.8 64 57.8
BraA03t09574Z Brassica rapa HOM05D002990 ORTHO05D003954 3.4e-11 72.8 64 59.4
ATR1132G100 Amborella trichopoda HOM05D002990 ORTHO05D003954 4.5e-11 72.4 63 54.0
Pp3c24_4890 Physcomitrium patens HOM05D002990 ORTHO05D003954 5.8e-11 72.0 63 57.1
Pp3c8_9870 Physcomitrium patens HOM05D002990 ORTHO05D003954 7.6e-11 71.6 63 55.6
Mapoly0022s0045 Marchantia polymorpha HOM05D002990 ORTHO05D003954 1.0e-10 71.2 63 52.4
ECA238G4279 Erigeron canadensis HOM05D002990 ORTHO05D003954 8.4e-10 68.2 47 68.1
SMO134G0021 Selaginella moellendorffii HOM05D002990 ORTHO05D003954 8.4e-10 68.2 63 52.4
ATR0824G151 Amborella trichopoda HOM05D002990 ORTHO05D003954 1.1e-09 67.8 63 54.0
CDE04G3634 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 2.5e-09 66.6 40 77.5
BraA10t45158Z Brassica rapa HOM05D002990 ORTHO05D003954 9.3e-09 64.7 88 45.5
BcaC08g47628 Brassica carinata HOM05D002990 ORTHO05D024332 3.9e-07 59.3 64 50.0
Os08g0367625 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D025120 3.9e-07 59.3 51 62.7
C06p51810 Brassica napus HOM05D002990 ORTHO05D024332 6.7e-07 58.5 62 48.4
Actinidia26175 Actinidia chinensis HOM05D002990 ORTHO05D003954 1.1e-06 57.8 35 77.1
CBR_g30127 Chara braunii HOM05D002990 ORTHO05D003954 2.5e-06 56.6 63 42.9
AUR62011579 Chenopodium quinoa HOM05D002990 ORTHO05D003954 7.4e-06 55.1 35 74.3


User provided reference genes

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