Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03880 Coffea canephora HOM05D002366 ORTHO05D002499 4.1e-54 214.5 113 100.0
Dinv20493 Davidia involucrata HOM05D002366 ORTHO05D002499 1.0e-20 103.6 125 43.2
Dinv20549 Davidia involucrata HOM05D002366 ORTHO05D002499 1.0e-20 103.6 125 43.2
Migut.E00564 Erythranthe guttata HOM05D002366 ORTHO05D002499 1.3e-20 103.2 109 45.0
Peaxi162Scf00033g02314 Petunia axillaris HOM05D002366 ORTHO05D014666 1.2e-18 96.7 112 46.4
Solyc01g005040.3 Solanum lycopersicum HOM05D002366 ORTHO05D014666 1.3e-15 86.7 113 43.4
SalBow2G3130 Salvia bowleyana HOM05D002366 ORTHO05D002499 1.7e-15 86.3 108 38.9
Gohir.D10G226600 Gossypium hirsutum HOM05D002366 ORTHO05D002499 4.9e-15 84.7 105 41.9
Sopen01g001060 Solanum pennellii HOM05D000238 ORTHO05D001156 4.9e-15 84.7 113 42.5
Gohir.A10G217500 Gossypium hirsutum HOM05D002366 ORTHO05D002499 6.4e-15 84.3 105 42.9
Nitab4.5_0001822g0030 Nicotiana tabacum HOM05D002366 ORTHO05D014666 6.4e-15 84.3 108 42.6
Dinv20495 Davidia involucrata HOM05D002366 ORTHO05D002499 8.3e-15 84.0 133 42.9
Gohir.D10G226300 Gossypium hirsutum HOM05D002366 ORTHO05D002499 1.4e-14 83.2 105 41.0
Gorai.011G257400 Gossypium raimondii HOM05D002366 ORTHO05D002499 2.4e-14 82.4 105 41.0
GSVIVG01016541001 Vitis vinifera HOM05D002366 ORTHO05D002499 3.2e-14 82.0 113 46.0
CDE07G1817 Ceratophyllum demersum HOM05D002366 ORTHO05D002499 5.4e-14 81.3 112 42.0
GSVIVG01016540001 Vitis vinifera HOM05D002366 ORTHO05D002499 9.2e-14 80.5 110 43.6
DCAR_023535 Daucus carota HOM05D002366 ORTHO05D002499 1.2e-13 80.1 115 39.1
Dinv20547 Davidia involucrata HOM05D002366 ORTHO05D002499 1.2e-13 80.1 144 40.3
Nitab4.5_0020917g0010 Nicotiana tabacum HOM05D002366 ORTHO05D014666 1.2e-13 80.1 108 39.8
Oeu040913.1 Olea europaea HOM05D002366 ORTHO05D002499 2.7e-13 79.0 122 41.8
Oeu016217.1 Olea europaea HOM05D002366 ORTHO05D002499 4.6e-13 78.2 122 41.0
Nitab4.5_0002905g0040 Nicotiana tabacum HOM05D002366 ORTHO05D014666 6.0e-13 77.8 91 44.0
Manes.17G090200 Manihot esculenta HOM05D002366 ORTHO05D002499 1.3e-12 76.6 123 36.6
Nitab4.5_0002202g0040 Nicotiana tabacum HOM05D002366 ORTHO05D014666 1.7e-12 76.3 91 42.9
ECA233G2103 Erigeron canadensis HOM05D002366 ORTHO05D002499 2.3e-12 75.9 122 36.1
PGSC0003DMG400022768 Solanum tuberosum HOM05D019649 ORTHO05D014666 6.6e-12 74.3 115 35.7
Thecc.10G043700 Theobroma cacao HOM05D002366 ORTHO05D002499 8.6e-12 73.9 105 39.0
SalBow3G2180 Salvia bowleyana HOM05D002366 ORTHO05D002499 1.1e-11 73.6 113 40.7
DCAR_027633 Daucus carota HOM05D002366 ORTHO05D002499 1.5e-11 73.2 111 45.0
Dinv26005 Davidia involucrata HOM05D002366 ORTHO05D002499 1.9e-11 72.8 110 40.0
Dinv31454 Davidia involucrata HOM05D002366 ORTHO05D002499 2.5e-11 72.4 110 40.0
Nitab4.5_0000175g0210 Nicotiana tabacum HOM05D002366 ORTHO05D014666 4.3e-11 71.6 108 38.9
Duzib114G1053 Durio zibethinus HOM05D002366 ORTHO05D002499 5.6e-11 71.2 105 39.0
Oeu042759.1 Olea europaea HOM05D002366 ORTHO05D002499 9.5e-11 70.5 114 40.4
Oeu048250.1 Olea europaea HOM05D002366 ORTHO05D002499 9.5e-11 70.5 110 40.9
TWI38G1308 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 1.2e-10 70.1 110 38.2
Manes.14G174100 Manihot esculenta HOM05D002366 ORTHO05D002499 2.1e-10 69.3 116 37.1
CSS0010618 Camellia sinensis var. sinensis HOM05D002366 ORTHO05D002499 2.8e-10 68.9 110 39.1
SalBow6G6566 Salvia bowleyana HOM05D002366 ORTHO05D002499 2.8e-10 68.9 113 38.1
Cc02_g07950 Coffea canephora HOM05D002366 ORTHO05D002499 3.6e-10 68.6 110 37.3
DCAR_019173 Daucus carota HOM05D002366 ORTHO05D002499 3.6e-10 68.6 105 40.0
SalBow6G6394 Salvia bowleyana HOM05D002366 ORTHO05D002499 3.6e-10 68.6 113 38.1
Lsat_1_v5_gn_8_34180 Lactuca sativa HOM05D002366 ORTHO05D002499 4.7e-10 68.2 124 35.5
RcHm_v2.0_Chr7g0177731 Rosa chinensis HOM05D002366 ORTHO05D002499 4.7e-10 68.2 119 32.8
TPR.G18296 Trifolium pratense HOM05D002366 ORTHO05D002499 4.7e-10 68.2 110 36.4
Cc04_g09120 Coffea canephora HOM05D002366 ORTHO05D002499 6.2e-10 67.8 122 33.6
TPR.G15520 Trifolium pratense HOM05D002366 ORTHO05D002499 6.2e-10 67.8 110 34.5
Medtr7g024750 Medicago truncatula HOM05D002366 ORTHO05D002499 1.1e-09 67.0 110 33.6
RcHm_v2.0_Chr7g0177721 Rosa chinensis HOM05D002366 ORTHO05D002499 1.1e-09 67.0 115 30.4
SalBow5G4446 Salvia bowleyana HOM05D002366 ORTHO05D002499 1.1e-09 67.0 105 36.2
Glyma.09G170100 Glycine max HOM05D002366 ORTHO05D002499 1.4e-09 66.6 120 33.3
Lsat_1_v5_gn_7_29321 Lactuca sativa HOM05D002366 ORTHO05D002499 1.4e-09 66.6 104 34.6
Lj2g0004495 Lotus japonicus HOM05D002366 ORTHO05D002499 1.4e-09 66.6 121 32.2
Glyma.07G107600 Glycine max HOM05D002366 ORTHO05D002499 1.8e-09 66.2 120 32.5
Oeu019149.1 Olea europaea HOM05D002366 ORTHO05D002499 1.8e-09 66.2 111 35.1
Psat3g179160 Pisum sativum HOM05D002366 ORTHO05D002499 1.8e-09 66.2 110 34.5
TPR.G15505 Trifolium pratense HOM05D002366 ORTHO05D002499 1.8e-09 66.2 110 32.7
Ca_07285_v3 Cicer arietinum L. HOM05D002366 ORTHO05D002499 3.1e-09 65.5 110 33.6
TPR.G18306 Trifolium pratense HOM05D002366 ORTHO05D002499 3.1e-09 65.5 110 33.6
Migut.I00570 Erythranthe guttata HOM05D002366 ORTHO05D002499 4.0e-09 65.1 105 34.3
Atru.chr9.1589 Acer truncatum HOM05D002366 ORTHO05D002499 5.2e-09 64.7 116 33.6
AT2G39530 Arabidopsis thaliana HOM05D002366 ORTHO05D002499 5.2e-09 64.7 114 36.0
arahy.Tifrunner.gnm1.ann1.BG6DLE Arachis hypogaea HOM05D002366 ORTHO05D002499 6.8e-09 64.3 110 34.5
arahy.Tifrunner.gnm1.ann1.CW7JQJ Arachis hypogaea HOM05D002366 ORTHO05D002499 6.8e-09 64.3 110 34.5
Phvul.004G145800 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 6.8e-09 64.3 114 34.2
Atru.chr11.990 Acer truncatum HOM05D002366 ORTHO05D002499 8.9e-09 63.9 112 33.9
Actinidia28014 Actinidia chinensis HOM05D002366 ORTHO05D002499 8.9e-09 63.9 102 40.2
SalBow6G5537 Salvia bowleyana HOM05D002366 ORTHO05D002499 1.2e-08 63.5 105 41.9
Cc02_g07930 Coffea canephora HOM05D002366 ORTHO05D002499 1.5e-08 63.2 105 36.2
SalBow2G2007 Salvia bowleyana HOM05D002366 ORTHO05D002499 1.5e-08 63.2 119 33.6
Carub.0004s2161 Capsella rubella HOM05D002366 ORTHO05D002499 2.0e-08 62.8 114 35.1
BcaB02g09112 Brassica carinata HOM05D002366 ORTHO05D002499 2.6e-08 62.4 114 36.8
BcaC02g12081 Brassica carinata HOM05D002366 ORTHO05D002499 2.6e-08 62.4 114 36.8
A05p06860 Brassica napus HOM05D002366 ORTHO05D002499 2.6e-08 62.4 114 36.8
BraA05t19651Z Brassica rapa HOM05D002366 ORTHO05D002499 2.6e-08 62.4 114 36.8
Glyma.16G219700 Glycine max HOM05D002366 ORTHO05D002499 2.6e-08 62.4 115 34.8
Medtr7g024730 Medicago truncatula HOM05D002366 ORTHO05D002499 2.6e-08 62.4 110 31.8
Potri.010G204700 Populus trichocarpa HOM05D002366 ORTHO05D002499 2.6e-08 62.4 104 39.4
Sabra10G0158200 Salix brachista HOM05D002366 ORTHO05D002499 2.6e-08 62.4 110 32.7
Sp4g21820 Schrenkiella parvula HOM05D002366 ORTHO05D002499 2.6e-08 62.4 114 36.0
Thecc.03G067200 Theobroma cacao HOM05D002366 ORTHO05D002499 2.6e-08 62.4 110 35.5
FAN08G0111 Fragaria x ananassa HOM05D002366 ORTHO05D002499 3.4e-08 62.0 126 27.8
FAN13G0088 Fragaria x ananassa HOM05D002366 ORTHO05D002499 3.4e-08 62.0 115 30.4
BcaB06g29095 Brassica carinata HOM05D002366 ORTHO05D002499 4.4e-08 61.6 114 33.3
Dinv15677 Davidia involucrata HOM05D002366 ORTHO05D002499 4.4e-08 61.6 102 33.3
Migut.F01504 Erythranthe guttata HOM05D002366 ORTHO05D002499 4.4e-08 61.6 111 36.0
Lalb_Chr17g0336171 Lupinus albus HOM05D002366 ORTHO05D002499 4.4e-08 61.6 110 32.7
Solyc11g006455.1 Solanum lycopersicum HOM05D002366 ORTHO05D002499 5.8e-08 61.2 108 36.1
Nitab4.5_0004454g0030 Nicotiana tabacum HOM05D002366 ORTHO05D002499 7.5e-08 60.8 112 33.0
Prupe.5G239200 Prunus persica HOM05D002366 ORTHO05D002499 7.5e-08 60.8 116 32.8
PGSC0003DMG400001986 Solanum tuberosum HOM05D002366 ORTHO05D002499 7.5e-08 60.8 108 36.1
Aa31LG5G20080 Aethionema arabicum HOM05D002366 ORTHO05D002499 9.9e-08 60.5 114 33.3
C04p08120 Brassica napus HOM05D002366 ORTHO05D002499 9.9e-08 60.5 114 36.0
BolC4t22422H Brassica oleracea HOM05D002366 ORTHO05D002499 9.9e-08 60.5 114 36.0
Lj1g0007186 Lotus japonicus HOM05D002366 ORTHO05D002499 9.9e-08 60.5 110 32.7
Lalb_Chr10g0091701 Lupinus albus HOM05D002366 ORTHO05D002499 9.9e-08 60.5 108 33.3
PGR083G2740 Punica granatum HOM05D002366 ORTHO05D002499 9.9e-08 60.5 111 34.2
BcaC02g07399 Brassica carinata HOM05D002366 ORTHO05D002499 1.3e-07 60.1 114 32.5
Thhalv10017310m.g Eutrema salsugineum HOM05D002366 ORTHO05D002499 1.3e-07 60.1 114 36.0
MBI13_g21678_MAGBIO Magnolia biondii HOM05D002366 ORTHO05D002499 1.3e-07 60.1 115 33.0
MELO3C021643.2 Cucumis melo HOM05D002366 ORTHO05D002499 1.7e-07 59.7 104 39.4
Lj1g0005309 Lotus japonicus HOM05D002366 ORTHO05D002499 1.7e-07 59.7 110 38.2
PGSC0003DMG400035890 Solanum tuberosum HOM05D002366 ORTHO05D002499 1.7e-07 59.7 111 32.4
VMungo0464G1622 Vigna mungo HOM05D002366 ORTHO05D002499 1.7e-07 59.7 67 40.3
AL4G36950 Arabidopsis lyrata HOM05D002366 ORTHO05D002499 2.2e-07 59.3 114 33.3
Dinv26006 Davidia involucrata HOM05D002366 ORTHO05D002499 2.2e-07 59.3 113 34.5
ECA232G1962 Erigeron canadensis HOM05D000340 ORTHO05D000821 2.2e-07 59.3 66 42.4
TWI81G0381 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 2.2e-07 59.3 117 33.3
MSTRG.8245 Avicennia marina HOM05D002366 ORTHO05D002499 2.9e-07 58.9 94 36.2
CARHR134410 Cardamine hirsuta HOM05D002366 ORTHO05D002499 2.9e-07 58.9 114 32.5
Nitab4.5_0001243g0010 Nicotiana tabacum HOM05D002366 ORTHO05D002499 2.9e-07 58.9 99 34.3
Phvul.004G145701 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 2.9e-07 58.9 112 33.9
TWI60G0723 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 2.9e-07 58.9 116 34.5
TWI74G0850 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 3.7e-07 58.5 118 31.4
CANSAT01G2159 Cannabis sativa HOM05D002366 ORTHO05D002499 4.9e-07 58.2 125 32.8
CANSAT56G3432 Cannabis sativa HOM05D002366 ORTHO05D002499 4.9e-07 58.2 110 36.4
Haze_17057 Corylus avellana HOM05D002366 ORTHO05D002499 4.9e-07 58.2 110 30.9
Haze_18932 Corylus avellana HOM05D002366 ORTHO05D002499 4.9e-07 58.2 104 34.6
BolC4t28238H Brassica oleracea HOM05D002366 ORTHO05D002499 6.4e-07 57.8 114 33.3
Migut.F01505 Erythranthe guttata HOM05D002366 ORTHO05D002499 6.4e-07 57.8 111 34.2
FvH4_5g17860 Fragaria vesca HOM05D002366 ORTHO05D002499 6.4e-07 57.8 121 28.1
FAN18G2907 Fragaria x ananassa HOM05D002366 ORTHO05D002499 6.4e-07 57.8 121 28.1
TAR629G0597 Trochodendron aralioides HOM05D002366 ORTHO05D002499 6.4e-07 57.8 54 50.0
CsaV3_5G026570 Cucumis sativus L. HOM05D002366 ORTHO05D002499 8.3e-07 57.4 104 39.4
Migut.F01502 Erythranthe guttata HOM05D002366 ORTHO05D002499 8.3e-07 57.4 111 35.1
FvH4_5g17870 Fragaria vesca HOM05D002366 ORTHO05D002499 8.3e-07 57.4 63 39.7
FAN13G1140 Fragaria x ananassa HOM05D002366 ORTHO05D002499 8.3e-07 57.4 63 39.7
FAN18G0936 Fragaria x ananassa HOM05D002366 ORTHO05D002499 8.3e-07 57.4 63 39.7
Oeu042016.1 Olea europaea HOM05D002366 ORTHO05D002499 8.3e-07 57.4 103 35.0
Peaxi162Scf00760g00219 Petunia axillaris HOM05D002366 ORTHO05D002499 1.1e-06 57.0 105 34.3
Potri.012G040100 Populus trichocarpa HOM05D002366 ORTHO05D002499 1.4e-06 56.6 120 30.8
PGSC0003DMG400027047 Solanum tuberosum HOM05D002366 ORTHO05D002499 1.9e-06 56.2 117 29.9
AL4G36940 Arabidopsis lyrata HOM05D002366 ORTHO05D002499 2.4e-06 55.8 114 30.7
BcaB06g29094 Brassica carinata HOM05D002366 ORTHO05D002499 2.4e-06 55.8 114 32.5
FAN03G0063 Fragaria x ananassa HOM05D002366 ORTHO05D002499 2.4e-06 55.8 105 35.2
Phvul.008G012300 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 2.4e-06 55.8 110 35.5
Solyc05g055150.1 Solanum lycopersicum HOM05D002366 ORTHO05D002499 2.4e-06 55.8 111 31.5
CANSAT56G1523 Cannabis sativa HOM05D002366 ORTHO05D002499 3.2e-06 55.5 110 35.5
Thhalv10017305m.g Eutrema salsugineum HOM05D002366 ORTHO05D002499 3.2e-06 55.5 114 32.5
FvH4_7g22201 Fragaria vesca HOM05D002366 ORTHO05D002499 3.2e-06 55.5 105 35.2
FAN06G2917 Fragaria x ananassa HOM05D002366 ORTHO05D002499 3.2e-06 55.5 105 35.2
Sabra10G0158300 Salix brachista HOM05D002366 ORTHO05D002499 3.2e-06 55.5 110 31.8
THA.LOC104810173 Tarenaya hassleriana HOM05D002366 ORTHO05D002499 3.2e-06 55.5 112 33.9
AT2G39518 Arabidopsis thaliana HOM05D002366 ORTHO05D002499 4.1e-06 55.1 114 30.7
Nitab4.5_0025009g0010 Nicotiana tabacum HOM05D002366 ORTHO05D002499 4.1e-06 55.1 112 32.1
Sp4g21830 Schrenkiella parvula HOM05D002366 ORTHO05D002499 4.1e-06 55.1 114 33.3
CANSAT56G2475 Cannabis sativa HOM05D002366 ORTHO05D002499 5.4e-06 54.7 110 30.0
CANSAT56G4267 Cannabis sativa HOM05D002366 ORTHO05D002499 5.4e-06 54.7 110 30.0
Haze_17054 Corylus avellana HOM05D002366 ORTHO05D002499 5.4e-06 54.7 114 36.0
Peaxi162Scf00171g00734 Petunia axillaris HOM05D002366 ORTHO05D002499 5.4e-06 54.7 63 39.7
C04p67400 Brassica napus HOM05D002366 ORTHO05D002499 7.1e-06 54.3 113 31.0
Glyma.02G092500 Glycine max HOM05D002366 ORTHO05D002499 7.1e-06 54.3 113 33.6
VMungo0464G0902 Vigna mungo HOM05D002366 ORTHO05D002499 7.1e-06 54.3 110 29.1
VMungo1383G2089 Vigna mungo HOM05D002366 ORTHO05D002499 7.1e-06 54.3 110 32.7
BraA04t18467Z Brassica rapa HOM05D002366 ORTHO05D002499 9.2e-06 53.9 113 31.0
FAN01G1305 Fragaria x ananassa HOM05D002366 ORTHO05D002499 9.2e-06 53.9 105 34.3
Prupe.2G234000 Prunus persica HOM05D002366 ORTHO05D002499 9.2e-06 53.9 106 34.0
Sopen03g031880 Solanum pennellii HOM05D002366 ORTHO05D002499 9.2e-06 53.9 99 32.3
PGSC0003DMG400037321 Solanum tuberosum HOM05D002366 ORTHO05D002499 9.2e-06 53.9 104 31.7


User provided reference genes

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