Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g03760 Coffea canephora HOM05D000144 ORTHO05D034800 1.9e-44 182.2 94 100.0
Cc07_g07080 Coffea canephora HOM05D000144 ORTHO05D008375 2.9e-37 158.3 86 94.2
Cc00_g21230 Coffea canephora HOM05D000144 ORTHO05D034800 2.4e-36 155.2 86 93.0
Cc00_g20530 Coffea canephora HOM05D000144 ORTHO05D034800 4.2e-36 154.5 86 93.0
CiPaw.01G004600 Carya illinoinensis HOM05D000144 ORTHO05D008375 1.3e-21 106.3 77 68.8
Hma1.2p1_0852F.1_g228500 Hydrangea macrophylla HOM05D000144 ORTHO05D008375 2.9e-21 105.1 86 59.3
Hma1.2p1_0852F.1_g228510 Hydrangea macrophylla HOM05D000144 ORTHO05D008375 2.9e-21 105.1 86 59.3
TAR381G1287 Trochodendron aralioides HOM05D000144 ORTHO05D008375 6.5e-21 104.0 90 62.2
PGSC0003DMG400021445 Solanum tuberosum HOM05D000144 ORTHO05D008375 8.4e-21 103.6 86 58.1
Sopen02g036930 Solanum pennellii HOM05D000144 ORTHO05D008375 1.1e-20 103.2 86 58.1
Solyc02g092380.4 Solanum lycopersicum HOM05D000144 ORTHO05D008375 1.4e-20 102.8 86 59.3
Oeu013322.1 Olea europaea HOM05D000144 ORTHO05D008375 3.2e-20 101.7 82 58.5
Potri.005G148900 Populus trichocarpa HOM05D000144 ORTHO05D008375 7.1e-20 100.5 88 59.1
CSS0036973 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D008375 1.6e-19 99.4 74 59.5
Manes.12G114000 Manihot esculenta HOM05D000144 ORTHO05D008375 1.6e-19 99.4 81 66.7
CAN.G1075.36 Capsicum annuum HOM05D000144 ORTHO05D008375 2.1e-19 99.0 86 57.0
Oeu014248.1 Olea europaea HOM05D000144 ORTHO05D008375 2.1e-19 99.0 79 62.0
Peaxi162Scf00548g00659 Petunia axillaris HOM05D000144 ORTHO05D008375 2.1e-19 99.0 84 58.3
Nitab4.5_0000142g0040 Nicotiana tabacum HOM05D000144 ORTHO05D008375 2.7e-19 98.6 86 59.3
Thecc.01G072500 Theobroma cacao HOM05D000144 ORTHO05D008375 2.7e-19 98.6 88 65.9
Actinidia36432 Actinidia chinensis HOM05D000144 ORTHO05D008375 3.5e-19 98.2 86 55.8
GSVIVG01000108001 Vitis vinifera HOM05D000144 ORTHO05D008375 4.6e-19 97.8 86 58.1
Nitab4.5_0002119g0110 Nicotiana tabacum HOM05D000144 ORTHO05D008375 6.0e-19 97.4 86 58.1
MSTRG.23672 Avicennia marina HOM05D000144 ORTHO05D008375 7.9e-19 97.1 86 58.1
Sabra05G0118600 Salix brachista HOM05D000144 ORTHO05D008375 1.3e-18 96.3 86 58.1
Gohir.D12G075500 Gossypium hirsutum HOM05D000144 ORTHO05D008375 1.8e-18 95.9 87 60.9
Nn5g30589 Nelumbo nucifera HOM05D000144 ORTHO05D008375 3.0e-18 95.1 87 59.8
Aqoxy6G02612 Aquilegia oxysepala HOM05D000144 ORTHO05D008375 1.1e-17 93.2 86 58.1
Gorai.008G083600 Gossypium raimondii HOM05D000144 ORTHO05D008375 1.1e-17 93.2 84 61.9
TWI73G1111 Tripterygium wilfordii HOM05D000144 ORTHO05D008375 1.1e-17 93.2 87 60.9
Cpa.g.sc6.18 Carica papaya HOM05D000144 ORTHO05D008375 1.9e-17 92.4 79 62.0
ClCG01G017550 Citrullus lanatus HOM05D000144 ORTHO05D008375 2.5e-17 92.0 86 59.3
Glyma.01G194100 Glycine max HOM05D000144 ORTHO05D008375 2.5e-17 92.0 88 60.2
Glyma.11G047800 Glycine max HOM05D000144 ORTHO05D008375 2.5e-17 92.0 88 60.2
AUR62040239 Chenopodium quinoa HOM05D000144 ORTHO05D008375 5.7e-17 90.9 86 55.8
Cfa004131 Carpinus fangiana HOM05D000144 ORTHO05D008375 9.7e-17 90.1 86 54.7
CsaV3_6G044090 Cucumis sativus L. HOM05D000144 ORTHO05D008375 1.3e-16 89.7 86 58.1
MELO3C007631.2 Cucumis melo HOM05D000144 ORTHO05D008375 2.2e-16 89.0 86 57.0
Medtr5g015500 Medicago truncatula HOM05D000144 ORTHO05D008375 3.7e-16 88.2 88 58.0
TPR.G34857 Trifolium pratense HOM05D000144 ORTHO05D008375 4.8e-16 87.8 86 59.3
vmacro05409 Vaccinium macrocarpon HOM05D000144 ORTHO05D008375 4.8e-16 87.8 97 48.5
VMungo1215G0773 Vigna mungo HOM05D000144 ORTHO05D008375 4.8e-16 87.8 87 56.3
AUR62004008 Chenopodium quinoa HOM05D000144 ORTHO05D008375 6.3e-16 87.4 86 53.5
Atru.chr3.1009 Acer truncatum HOM05D000144 ORTHO05D008375 1.1e-15 86.7 86 58.1
Rhsim10G0099600 Rhododendron simsii HOM05D000144 ORTHO05D008375 1.1e-15 86.7 76 59.2
SGA_v2.0_scaffold15G07454 Striga asiatica HOM05D000144 ORTHO05D008375 3.1e-15 85.1 86 53.5
TWI09G0055 Tripterygium wilfordii HOM05D000144 ORTHO05D008375 3.1e-15 85.1 88 59.1
Ciclev10025214m.g Citrus clementina HOM05D000144 ORTHO05D008375 6.9e-15 84.0 69 62.3
HanXRQChr15g0472631 Helianthus annuus HOM05D000144 ORTHO05D008375 2.0e-14 82.4 75 57.3
Lalb_Chr16g0378861 Lupinus albus HOM05D000144 ORTHO05D008375 3.4e-14 81.6 87 51.7
Phvul.002G010800 Phaseolus vulgaris HOM05D000144 ORTHO05D008375 3.4e-14 81.6 88 55.7
Actinidia11983 Actinidia chinensis HOM05D000144 ORTHO05D008375 4.5e-14 81.3 68 58.8
Ca_24694_v3 Cicer arietinum L. HOM05D000144 ORTHO05D008375 4.5e-14 81.3 86 57.0
Lj2g0027160 Lotus japonicus HOM05D000144 ORTHO05D008375 7.7e-14 80.5 95 54.7
Psat2g171520 Pisum sativum HOM05D000144 ORTHO05D008375 7.7e-14 80.5 89 55.1
EL10Ac6g15620 Beta vulgaris HOM05D000144 ORTHO05D008375 1.0e-13 80.1 74 59.5
SalBow3G3765 Salvia bowleyana HOM05D000144 ORTHO05D008375 2.2e-13 79.0 87 52.9
Sc16g0002880 Simmondsia chinensis HOM05D000144 ORTHO05D008375 3.8e-13 78.2 87 49.4
arahy.Tifrunner.gnm1.ann1.L6JH5D Arachis hypogaea HOM05D000144 ORTHO05D008375 6.5e-13 77.4 77 59.7
PGR004G0927 Punica granatum HOM05D000144 ORTHO05D008375 6.5e-13 77.4 86 51.2
arahy.Tifrunner.gnm1.ann1.ZP9CR3 Arachis hypogaea HOM05D000144 ORTHO05D008375 8.5e-13 77.0 77 59.7
PSO541G5893 Papaver somniferum HOM05D000144 ORTHO05D008375 8.5e-13 77.0 90 54.4
CDE07G1536 Ceratophyllum demersum HOM05D000144 ORTHO05D008375 1.4e-12 76.3 86 51.2
MD15G1307700 Malus domestica HOM05D000144 ORTHO05D008375 1.9e-12 75.9 71 57.7
PSO675G3797 Papaver somniferum HOM05D000144 ORTHO05D008375 5.5e-12 74.3 90 50.0
Haze_15284 Corylus avellana HOM05D000144 ORTHO05D008375 7.2e-12 73.9 93 48.4
Hund16400 Selenicereus undatus HOM05D000144 ORTHO05D008375 7.2e-12 73.9 74 58.1
COL.COLO4_11575 Corchorus olitorius HOM05D000144 ORTHO05D008375 1.2e-11 73.2 76 57.9
Prupe.6G220900 Prunus persica HOM05D000144 ORTHO05D008375 2.7e-11 72.0 72 59.7
Zm00001eb007780 Zea mays HOM05D000144 ORTHO05D008375 6.1e-11 70.9 74 55.4
AL8G43770 Arabidopsis lyrata HOM05D000144 ORTHO05D008375 1.4e-10 69.7 77 50.6
ATR1153G005 Amborella trichopoda HOM05D000144 ORTHO05D008375 1.8e-10 69.3 86 44.2
FAN23G2810 Fragaria x ananassa HOM05D000144 ORTHO05D008375 3.0e-10 68.6 87 50.6
FvH4_1g17680 Fragaria vesca HOM05D000144 ORTHO05D008375 6.7e-10 67.4 75 56.0
FAN19G2025 Fragaria x ananassa HOM05D000144 ORTHO05D008375 6.7e-10 67.4 75 56.0
AT5G67530 Arabidopsis thaliana HOM05D000144 ORTHO05D008375 1.1e-09 66.6 73 49.3
THA.LOC104827618 Tarenaya hassleriana HOM05D000144 ORTHO05D008375 1.1e-09 66.6 71 53.5
Gohir.A12G077300 Gossypium hirsutum HOM05D000144 ORTHO05D008375 2.5e-09 65.5 51 64.7
Sp2g29120 Schrenkiella parvula HOM05D000144 ORTHO05D008375 2.5e-09 65.5 74 44.6
MD02G1185800 Malus domestica HOM05D000144 ORTHO05D008375 3.3e-09 65.1 69 53.6
FAN26G3316 Fragaria x ananassa HOM05D000144 ORTHO05D008375 5.7e-09 64.3 87 49.4
FAN28G1584 Fragaria x ananassa HOM05D000144 ORTHO05D008375 5.7e-09 64.3 87 49.4
DCAR_025800 Daucus carota HOM05D000144 ORTHO05D008375 7.4e-09 63.9 68 48.5
Eucgr.I00705 Eucalyptus grandis HOM05D000144 ORTHO05D008375 9.7e-09 63.5 81 53.1
Thhalv10003864m.g Eutrema salsugineum HOM05D000144 ORTHO05D008375 9.7e-09 63.5 74 50.0
Aa31LG1G16080 Aethionema arabicum HOM05D000144 ORTHO05D008375 2.2e-08 62.4 71 49.3
ECA246G5277 Erigeron canadensis HOM05D000144 ORTHO05D008375 3.7e-08 61.6 47 61.7
A06p32890 Brassica napus HOM05D000144 ORTHO05D008375 4.8e-08 61.2 75 49.3
C03p59580 Brassica napus HOM05D000144 ORTHO05D008375 4.8e-08 61.2 75 49.3
BolC3t18222H Brassica oleracea HOM05D000144 ORTHO05D008375 4.8e-08 61.2 75 49.3
BraA06t26220Z Brassica rapa HOM05D000144 ORTHO05D008375 4.8e-08 61.2 75 49.3
Migut.H00349 Erythranthe guttata HOM05D000144 ORTHO05D008375 1.4e-07 59.7 86 39.5
CARHR280050 Cardamine hirsuta HOM05D000144 ORTHO05D008375 2.4e-07 58.9 89 38.2
RcHm_v2.0_Chr2g0108011 Rosa chinensis HOM05D000144 ORTHO05D008375 3.1e-07 58.5 70 52.9
HPP92_024498 Vanilla planifolia HOM05D000144 ORTHO05D008375 4.1e-07 58.2 92 45.7
Carub.0008s2694 Capsella rubella HOM05D000144 ORTHO05D008375 1.2e-06 56.6 77 41.6


User provided reference genes

Program Settings