Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g21210 Coffea canephora HOM05D000032 ORTHO05D007443 3.0e-76 288.5 152 100.0
Cc01_g21860 Coffea canephora HOM05D000032 ORTHO05D007443 6.7e-52 207.6 158 75.3
Cc07_g07410 Coffea canephora HOM05D000032 ORTHO05D007443 1.9e-30 136.3 78 87.2
Actinidia36419 Actinidia chinensis HOM05D000032 ORTHO05D007443 6.3e-26 121.3 78 76.9
vmacro04601 Vaccinium macrocarpon HOM05D000032 ORTHO05D007443 3.1e-25 119.0 78 73.1
MSTRG.23651 Avicennia marina HOM05D000032 ORTHO05D007443 4.1e-25 118.6 78 74.4
Dinv23050 Davidia involucrata HOM05D000032 ORTHO05D007443 5.4e-25 118.2 78 74.4
Rhsim10G0094500 Rhododendron simsii HOM05D000032 ORTHO05D007443 1.2e-24 117.1 78 71.8
CSS0045534 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007443 1.6e-24 116.7 78 71.8
Cfa006775 Carpinus fangiana HOM05D000032 ORTHO05D007443 2.0e-24 116.3 78 69.2
Nitab4.5_0001225g0240 Nicotiana tabacum HOM05D000032 ORTHO05D007443 2.0e-24 116.3 78 71.8
TAR381G1241 Trochodendron aralioides HOM05D000032 ORTHO05D007443 2.0e-24 116.3 78 74.4
Haze_03984 Corylus avellana HOM05D000032 ORTHO05D007443 2.7e-24 115.9 78 69.2
Oeu014318.2 Olea europaea HOM05D000032 ORTHO05D007443 2.7e-24 115.9 78 70.5
Atru.chr3.1066 Acer truncatum HOM05D000032 ORTHO05D007443 4.5e-24 115.2 78 70.5
Nitab4.5_0010329g0010 Nicotiana tabacum HOM05D000032 ORTHO05D007443 5.9e-24 114.8 78 70.5
GSVIVG01007277001 Vitis vinifera HOM05D000032 ORTHO05D007443 7.7e-24 114.4 78 70.5
Migut.H00321 Erythranthe guttata HOM05D000032 ORTHO05D007443 1.3e-23 113.6 78 67.9
QL06p038783 Quercus lobata HOM05D000032 ORTHO05D007443 1.3e-23 113.6 78 67.9
Hund16419 Selenicereus undatus HOM05D000032 ORTHO05D007443 1.3e-23 113.6 78 69.2
Solyc02g070100.3 Solanum lycopersicum HOM05D000032 ORTHO05D007443 1.7e-23 113.2 78 69.2
Sopen02g019260 Solanum pennellii HOM05D000032 ORTHO05D007443 1.7e-23 113.2 78 69.2
Ciclev10025201m.g Citrus clementina HOM05D000032 ORTHO05D007443 3.8e-23 112.1 78 69.2
CAN.G79.11 Capsicum annuum HOM05D000032 ORTHO05D007443 5.0e-23 111.7 78 66.7
PGSC0003DMG400021177 Solanum tuberosum HOM05D000032 ORTHO05D007443 6.5e-23 111.3 78 67.9
Sc16g0002800 Simmondsia chinensis HOM05D000032 ORTHO05D007443 1.1e-22 110.5 78 69.2
Peaxi162Scf00423g00221 Petunia axillaris HOM05D000032 ORTHO05D007443 1.5e-22 110.2 78 66.7
Nn5g30290 Nelumbo nucifera HOM05D000032 ORTHO05D007443 1.9e-22 109.8 79 70.9
SGA_v2.0_scaffold121G33068 Striga asiatica HOM05D000032 ORTHO05D007443 2.5e-22 109.4 78 65.4
Thecc.01G077000 Theobroma cacao HOM05D000032 ORTHO05D007443 4.2e-22 108.6 78 65.4
Ah.02g125290 Amaranthus hybridus HOM05D000032 ORTHO05D007443 1.2e-21 107.1 78 65.4
Aqoxy3G01532 Aquilegia oxysepala HOM05D000032 ORTHO05D007443 1.6e-21 106.7 78 65.4
CDE01G0309 Ceratophyllum demersum HOM05D000032 ORTHO05D007443 2.1e-21 106.3 79 68.4
MBI16_g35719_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007443 2.8e-21 105.9 79 64.6
PSO541G1009 Papaver somniferum HOM05D000032 ORTHO05D007443 2.8e-21 105.9 81 66.7
TPR.G6058 Trifolium pratense HOM05D000032 ORTHO05D007443 2.8e-21 105.9 78 64.1
Glyma.10G152900 Glycine max HOM05D000032 ORTHO05D007443 3.6e-21 105.5 78 65.4
Manes.13G108500 Manihot esculenta HOM05D000032 ORTHO05D007443 3.6e-21 105.5 78 65.4
PSO675G5622 Papaver somniferum HOM05D000032 ORTHO05D007443 3.6e-21 105.5 81 65.4
Ca_10121_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007443 6.1e-21 104.8 78 64.1
Lj4C166T2 Lonicera japonica HOM05D000032 ORTHO05D007443 6.1e-21 104.8 87 62.1
Prupe.6G216200 Prunus persica HOM05D000032 ORTHO05D007443 6.1e-21 104.8 78 64.1
MD02G1190200 Malus domestica HOM05D000032 ORTHO05D007443 1.4e-20 103.6 78 64.1
Eucgr.H02337 Eucalyptus grandis HOM05D000032 ORTHO05D007443 1.8e-20 103.2 78 64.1
CANSAT64G0745 Cannabis sativa HOM05D000032 ORTHO05D007443 2.3e-20 102.8 78 61.5
AUR62007544 Chenopodium quinoa HOM05D000032 ORTHO05D007443 2.3e-20 102.8 78 62.8
COL.COLO4_11621 Corchorus olitorius HOM05D000032 ORTHO05D007443 2.3e-20 102.8 78 61.5
Potri.007G021800 Populus trichocarpa HOM05D000032 ORTHO05D007443 2.3e-20 102.8 78 61.5
AUR62004035 Chenopodium quinoa HOM05D000032 ORTHO05D007443 3.0e-20 102.4 78 62.8
RcHm_v2.0_Chr7g0222281 Rosa chinensis HOM05D000032 ORTHO05D007443 3.0e-20 102.4 78 62.8
HanXRQChr11g0323571 Helianthus annuus HOM05D000032 ORTHO05D007443 4.0e-20 102.1 78 61.5
CiPaw.08G149900 Carya illinoinensis HOM05D000032 ORTHO05D007443 5.2e-20 101.7 78 60.3
Glyma.20G235400 Glycine max HOM05D000032 ORTHO05D007443 6.8e-20 101.3 78 62.8
Medtr1g083130 Medicago truncatula HOM05D000032 ORTHO05D007443 6.8e-20 101.3 78 60.3
AL7G16320 Arabidopsis lyrata HOM05D000032 ORTHO05D007443 8.8e-20 100.9 78 61.5
Duzib147G1507 Durio zibethinus HOM05D000032 ORTHO05D007443 1.2e-19 100.5 78 61.5
HPP92_011749 Vanilla planifolia HOM05D000032 ORTHO05D007443 1.2e-19 100.5 84 60.7
FvH4_5g29390 Fragaria vesca HOM05D000032 ORTHO05D007443 2.0e-19 99.8 78 61.5
FAN18G2124 Fragaria x ananassa HOM05D000032 ORTHO05D007443 2.6e-19 99.4 78 60.3
PGR102G1941 Punica granatum HOM05D000032 ORTHO05D007443 2.6e-19 99.4 78 59.0
unitig_899.g14589 Utricularia gibba HOM05D000032 ORTHO05D007443 2.6e-19 99.4 78 60.3
Sabra07G0018900 Salix brachista HOM05D000032 ORTHO05D007443 3.4e-19 99.0 78 60.3
Cpa.g.sc125.34 Carica papaya HOM05D000032 ORTHO05D007443 4.4e-19 98.6 78 60.3
FAN04G2244 Fragaria x ananassa HOM05D000032 ORTHO05D007443 4.4e-19 98.6 78 60.3
FAN08G0861 Fragaria x ananassa HOM05D000032 ORTHO05D007443 4.4e-19 98.6 78 60.3
FAN13G1203 Fragaria x ananassa HOM05D000032 ORTHO05D007443 4.4e-19 98.6 78 60.3
Gohir.D11G211100 Gossypium hirsutum HOM05D000032 ORTHO05D007443 4.4e-19 98.6 78 64.1
Gorai.007G226800 Gossypium raimondii HOM05D000032 ORTHO05D007443 4.4e-19 98.6 78 64.1
Lalb_Chr09g0323751 Lupinus albus HOM05D000032 ORTHO05D007443 4.4e-19 98.6 78 61.5
AT4G34910 Arabidopsis thaliana HOM05D000032 ORTHO05D007443 5.7e-19 98.2 78 59.0
arahy.Tifrunner.gnm1.ann1.11GZ1T Arachis hypogaea HOM05D000032 ORTHO05D007443 5.7e-19 98.2 83 54.2
C03p85330 Brassica napus HOM05D000032 ORTHO05D007443 5.7e-19 98.2 78 57.7
Gohir.A11G211800 Gossypium hirsutum HOM05D000032 ORTHO05D007443 5.7e-19 98.2 78 64.1
Lsat_1_v5_gn_4_158421 Lactuca sativa HOM05D000032 ORTHO05D007443 5.7e-19 98.2 79 62.0
TWI74G1593 Tripterygium wilfordii HOM05D000032 ORTHO05D007443 5.7e-19 98.2 78 59.0
BcaC01g00863 Brassica carinata HOM05D000032 ORTHO05D007443 7.5e-19 97.8 78 59.0
BolC3t20823H Brassica oleracea HOM05D000032 ORTHO05D007443 7.5e-19 97.8 78 59.0
Carub.0007s0539 Capsella rubella HOM05D000032 ORTHO05D007443 7.5e-19 97.8 78 60.3
Psat6g149960 Pisum sativum HOM05D000032 ORTHO05D007443 7.5e-19 97.8 79 60.8
ATR0739G078 Amborella trichopoda HOM05D000032 ORTHO05D007443 1.3e-18 97.1 79 62.0
arahy.Tifrunner.gnm1.ann1.318AHN Arachis hypogaea HOM05D000032 ORTHO05D007443 1.7e-18 96.7 83 53.0
arahy.Tifrunner.gnm1.ann1.MR2VJ3 Arachis hypogaea HOM05D000032 ORTHO05D007443 1.7e-18 96.7 83 53.0
Phvul.007G179201 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 1.7e-18 96.7 83 57.8
Phvul.007G193500 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 1.7e-18 96.7 83 57.8
BraA08t33617Z Brassica rapa HOM05D000032 ORTHO05D007443 2.2e-18 96.3 78 57.7
A01p03610 Brassica napus HOM05D000032 ORTHO05D007443 2.8e-18 95.9 78 57.7
VMungo0720G2333 Vigna mungo HOM05D000032 ORTHO05D007443 2.8e-18 95.9 83 56.6
BcaNung00645 Brassica carinata HOM05D000032 ORTHO05D007443 4.9e-18 95.1 78 57.7
A08p16490 Brassica napus HOM05D000032 ORTHO05D007443 4.9e-18 95.1 78 56.4
C01p03900 Brassica napus HOM05D000032 ORTHO05D007443 4.9e-18 95.1 78 57.7
BolC1t00383H Brassica oleracea HOM05D000032 ORTHO05D007443 4.9e-18 95.1 78 57.7
BraA01t00347Z Brassica rapa HOM05D000032 ORTHO05D007443 4.9e-18 95.1 78 57.7
CARHR243180 Cardamine hirsuta HOM05D000032 ORTHO05D007443 4.9e-18 95.1 78 56.4
Sp7g32660 Schrenkiella parvula HOM05D000032 ORTHO05D007443 4.9e-18 95.1 78 56.4
CsaV3_6G044370 Cucumis sativus L. HOM05D000032 ORTHO05D007443 6.3e-18 94.7 78 62.8
Thhalv10024759m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 6.3e-18 94.7 78 56.4
MELO3C007659.2 Cucumis melo HOM05D000032 ORTHO05D007443 8.3e-18 94.4 78 61.5
Aa31LG2G15600 Aethionema arabicum HOM05D000032 ORTHO05D007443 1.1e-17 94.0 78 56.4
Aa31LG2G15620 Aethionema arabicum HOM05D000032 ORTHO05D007443 1.1e-17 94.0 78 56.4
ClCG01G017830 Citrullus lanatus HOM05D000032 ORTHO05D007443 1.1e-17 94.0 78 61.5
Lj5g0020960 Lotus japonicus HOM05D000032 ORTHO05D007443 1.1e-17 94.0 78 57.7
Os03g0728800 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007443 1.4e-17 93.6 83 50.6
Rhsim02G0087100 Rhododendron simsii HOM05D000032 ORTHO05D007443 1.4e-17 93.6 91 56.0
PSO675G8515 Papaver somniferum HOM05D000032 ORTHO05D007443 4.1e-17 92.0 87 55.2
Sed0005463 Sechium edule HOM05D000032 ORTHO05D007443 4.1e-17 92.0 78 61.5
Sed0018251 Sechium edule HOM05D000032 ORTHO05D007443 5.4e-17 91.7 78 60.3
EL10Ac6g15590 Beta vulgaris HOM05D000032 ORTHO05D007443 1.6e-16 90.1 70 60.0
THA.LOC104807641 Tarenaya hassleriana HOM05D000032 ORTHO05D007443 2.0e-16 89.7 78 52.6
DCAR_004695 Daucus carota HOM05D000032 ORTHO05D007443 3.5e-16 89.0 78 59.0
SEGI_40001 Sequoiadendron giganteum HOM05D000032 ORTHO05D007443 5.9e-16 88.2 76 59.2
Zm00001eb215620 Zea mays HOM05D000032 ORTHO05D007443 3.8e-15 85.5 83 48.2
SHI12020 Sapria himalayana HOM05D000278 ORTHO05D007443 1.5e-14 83.6 78 52.6
BcaB03g11802 Brassica carinata HOM05D000032 ORTHO05D007443 1.0e-12 77.4 78 51.3
Pp3c27_1430 Physcomitrium patens HOM05D000032 ORTHO05D007443 2.0e-11 73.2 81 44.4
Mapoly0062s0065 Marchantia polymorpha HOM05D000032 ORTHO05D007443 9.8e-11 70.9 80 48.8
CBR_g22358 Chara braunii HOM05D000032 ORTHO05D007443 9.2e-09 64.3 90 43.3
SMO116G0033 Selaginella moellendorffii HOM05D000032 ORTHO05D007443 1.7e-07 60.1 79 35.4
HanXRQChr10g0318711 Helianthus annuus HOM05D000032 ORTHO05D007443 1.5e-06 57.0 40 65.0
BcaB01g03920 Brassica carinata HOM05D000032 ORTHO05D003727 7.3e-06 54.7 97 32.0


User provided reference genes

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