Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 8.5e-210 733.4 366 100.0
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 3.6e-120 435.6 351 65.0
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 2.2e-117 426.4 365 62.5
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.2e-99 367.5 351 56.1
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 7.9e-99 364.8 352 54.8
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.0e-98 362.8 351 55.6
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 5.7e-97 358.6 351 54.1
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 9.7e-97 357.8 353 55.5
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.8e-95 353.6 351 53.8
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 3.1e-95 352.8 350 54.3
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 6.9e-95 351.7 351 52.7
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 9.0e-95 351.3 356 53.1
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 3.4e-94 349.4 351 52.7
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.0e-93 347.8 352 52.6
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 2.2e-93 346.7 351 52.4
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 2.2e-93 346.7 351 52.4
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 2.9e-93 346.3 352 52.3
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 3.8e-93 345.9 351 51.6
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 6.5e-93 345.1 354 52.0
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 6.5e-93 345.1 363 51.0
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 6.5e-93 345.1 349 53.3
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.5e-92 343.2 354 51.7
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 3.2e-92 342.8 351 53.6
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 7.2e-92 341.7 357 50.4
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.2e-91 340.9 350 51.1
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.6e-91 340.5 351 53.3
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.1e-91 340.1 354 51.4
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 2.1e-91 340.1 354 52.5
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.7e-91 339.7 350 52.3
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 3.6e-91 339.3 354 50.8
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 7.9e-91 338.2 350 51.4
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.0e-90 337.8 350 52.3
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 3.9e-90 335.9 351 50.7
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 3.9e-90 335.9 394 48.0
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 3.9e-90 335.9 354 51.7
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 3.9e-90 335.9 391 47.6
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 6.7e-90 335.1 357 51.0
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 6.7e-90 335.1 350 51.1
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 8.8e-90 334.7 350 50.9
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.5e-89 334.0 313 54.3
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.5e-89 334.0 381 50.4
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.5e-89 334.0 391 47.3
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.6e-89 333.2 354 50.8
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 7.4e-89 331.6 352 50.3
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 7.4e-89 331.6 352 50.6
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 9.7e-89 331.3 350 51.1
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 9.7e-89 331.3 350 51.1
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 9.7e-89 331.3 350 51.1
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 9.7e-89 331.3 352 49.7
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.2e-88 330.1 351 50.4
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 8.2e-88 328.2 352 50.3
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 1.4e-87 327.4 351 50.4
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.4e-87 327.4 382 47.9
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.8e-87 327.0 354 49.2
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.8e-87 327.0 350 48.3
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.4e-87 326.6 363 49.0
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 3.1e-87 326.2 318 54.1
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 4.1e-87 325.9 354 49.4
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 4.1e-87 325.9 352 49.7
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 1.2e-86 324.3 354 49.4
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.2e-86 324.3 316 51.9
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.5e-86 323.9 353 49.3
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.4e-86 322.8 362 47.8
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.4e-86 322.8 362 47.8
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.7e-85 320.5 352 49.1
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 8.5e-85 318.2 350 48.9
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 9.4e-84 314.7 351 48.7
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.6e-83 312.8 317 51.4
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 5.7e-81 305.4 292 55.1
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 1.3e-80 304.3 347 45.8
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 2.2e-80 303.5 354 46.3
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.8e-80 302.4 345 47.5
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.8e-80 302.4 351 47.0
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.4e-79 300.8 355 46.2
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.8e-79 300.4 343 50.4
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 3.1e-79 299.7 371 47.2
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.1e-79 299.3 321 53.0
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 9.1e-79 298.1 351 44.7
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.9e-78 295.4 255 58.8
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 7.7e-78 295.0 284 54.9
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 2.2e-77 293.5 352 44.3
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.9e-77 293.1 362 43.1
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 2.9e-77 293.1 373 44.5
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 3.8e-77 292.7 351 47.6
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.8e-77 292.7 230 64.3
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 5.0e-77 292.4 326 50.0
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 6.5e-77 292.0 351 43.9
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.1e-76 291.2 374 44.4
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.6e-75 287.3 352 45.5
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.7e-75 286.6 322 48.1
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 3.6e-75 286.2 290 53.8
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 3.6e-75 286.2 353 42.5
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 6.1e-75 285.4 351 43.0
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 6.1e-75 285.4 230 60.9
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 6.1e-75 285.4 236 60.6
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.0e-74 284.6 230 60.9
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.8e-74 283.9 355 43.4
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.8e-74 283.9 355 43.4
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.8e-74 283.9 355 43.4
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.8e-74 283.9 352 42.6
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.3e-74 283.5 352 42.3
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 4.0e-74 282.7 351 42.7
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 1.5e-73 280.8 369 44.2
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.6e-73 280.0 293 52.6
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.3e-73 279.6 351 42.5
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 5.7e-73 278.9 320 49.1
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 7.5e-73 278.5 293 52.6
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 6.3e-72 275.4 349 43.8
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 8.2e-72 275.0 361 41.3
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 8.2e-72 275.0 352 42.3
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.4e-71 274.2 237 60.8
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 5.3e-71 272.3 230 61.7
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.2e-70 271.2 221 62.9
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.5e-70 269.6 319 47.3
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 5.9e-70 268.9 235 58.3
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 5.0e-69 265.8 314 47.1
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 2.6e-65 253.4 316 46.2
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.7e-62 243.4 361 41.0
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 4.5e-62 242.7 354 42.4
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 5.9e-62 242.3 351 39.0
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.9e-60 237.3 209 56.0
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.0e-59 231.9 351 38.2
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.5e-57 227.6 351 39.9
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.6e-57 226.9 350 40.9
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.4e-57 226.1 322 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 2.8e-56 223.4 279 43.0
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.1e-55 221.5 351 36.5
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 3.5e-54 216.5 166 61.4
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 2.9e-53 213.4 293 45.1
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 8.6e-53 211.8 354 38.1
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.1e-52 211.5 357 38.7
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 2.2e-48 197.2 351 39.0
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 4.7e-43 179.5 231 45.5
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.8e-41 172.6 184 52.2
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 5.4e-39 166.0 147 53.7
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 2.8e-35 153.7 241 37.3
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.1e-31 141.7 343 31.8
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.1e-20 105.1 211 36.5
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.6e-19 101.3 154 39.6
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 1.2e-14 85.1 50 88.0
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.3e-12 77.0 145 34.5
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.6e-12 76.3 123 37.4
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.3e-11 75.1 104 40.4
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.3e-11 75.1 121 38.0
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.6e-11 74.7 122 38.5
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 2.1e-11 74.3 121 38.8
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 4.8e-11 73.2 156 36.5
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 8.1e-11 72.4 66 54.5
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.1e-10 72.0 151 34.4
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 5.3e-10 69.7 161 32.3
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.6e-09 65.9 95 37.9
Cc07_g20520 Coffea canephora HOM05D004012 ORTHO05D004752 1.7e-08 64.7 35 85.7
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 3.2e-07 60.5 68 44.1


User provided reference genes

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