Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.7e-227 792.3 397 100.0
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 5.0e-208 727.6 397 91.4
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 5.6e-175 617.8 390 79.5
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.4e-173 613.2 390 79.0
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 7.6e-172 607.4 392 78.6
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.6e-169 599.7 387 79.8
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 4.6e-169 598.2 396 76.3
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.3e-168 595.9 387 79.6
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 3.0e-168 595.5 387 77.5
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 3.9e-168 595.1 386 77.2
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 2.4e-165 585.9 390 75.6
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 2.4e-165 585.9 389 75.8
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.2e-164 583.6 380 76.3
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 2.6e-164 582.4 389 74.8
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 3.4e-164 582.0 384 74.5
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 7.6e-164 580.9 390 75.1
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.7e-163 579.7 384 74.0
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.1e-162 577.0 390 74.9
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.1e-162 577.0 389 74.8
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.9e-162 576.2 393 75.3
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 4.2e-162 575.1 389 74.6
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 7.1e-162 574.3 393 75.1
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 7.1e-162 574.3 390 73.3
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.6e-161 573.2 390 74.1
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.6e-161 573.2 390 74.1
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.6e-161 573.2 390 73.1
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 3.5e-161 572.0 393 74.0
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.6e-161 571.6 391 74.9
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 6.0e-161 571.2 390 74.4
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 7.9e-161 570.9 391 74.2
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 7.9e-161 570.9 391 75.4
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 2.3e-160 569.3 418 71.3
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 3.0e-160 568.9 391 72.6
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 3.9e-160 568.5 388 74.0
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.7e-160 567.8 393 74.6
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 8.7e-160 567.4 421 69.4
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.3e-159 565.5 384 72.1
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 3.3e-159 565.5 391 72.1
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.1e-158 562.8 402 71.4
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 1.1e-157 560.5 391 73.1
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.4e-157 560.1 391 71.9
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 1.4e-157 560.1 393 73.8
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 5.3e-157 558.1 388 73.5
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 5.3e-157 558.1 388 73.5
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 5.3e-157 558.1 388 73.5
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 2.0e-156 556.2 391 70.8
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 5.8e-156 554.7 390 71.8
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 7.6e-156 554.3 393 72.8
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.3e-155 553.5 391 71.4
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.7e-155 553.1 382 72.5
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.7e-155 553.1 382 72.5
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 2.9e-155 552.4 391 70.6
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 8.4e-155 550.8 435 66.2
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.1e-154 550.4 391 71.4
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 2.7e-153 545.8 391 71.1
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.7e-153 545.8 391 70.8
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 3.0e-152 542.3 390 70.5
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 7.4e-151 537.7 389 68.9
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.2e-150 536.2 389 67.6
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 6.3e-150 534.6 391 68.3
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 4.1e-149 531.9 416 67.5
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 6.9e-149 531.2 391 70.8
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 3.8e-147 525.4 410 65.6
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 8.5e-147 524.2 381 68.0
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.9e-146 523.1 390 70.5
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 9.4e-146 520.8 354 75.7
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.6e-145 520.0 411 65.0
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.0e-144 517.3 389 68.9
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 1.7e-142 510.0 358 70.7
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.2e-142 509.6 360 71.4
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.8e-141 506.5 391 65.7
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.8e-141 506.5 368 69.6
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.1e-141 505.4 382 68.1
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 9.1e-141 504.2 393 65.1
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.5e-140 501.9 349 72.5
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 5.9e-140 501.5 405 63.7
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.9e-139 499.2 391 64.7
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.9e-139 499.2 389 64.5
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 5.0e-139 498.4 386 63.7
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 4.2e-138 495.4 350 71.4
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 9.4e-138 494.2 383 65.3
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 9.4e-138 494.2 392 64.0
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 1.6e-137 493.4 390 63.3
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 3.6e-137 492.3 384 65.4
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.4e-136 490.3 311 77.8
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 8.8e-136 487.6 383 65.3
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 8.8e-136 487.6 383 65.3
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 8.8e-136 487.6 399 62.9
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.1e-135 487.3 384 65.1
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.1e-135 487.3 383 67.6
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.5e-135 486.9 390 65.4
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 2.0e-135 486.5 345 73.0
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 3.3e-135 485.7 399 62.7
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 7.4e-135 484.6 384 63.8
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.3e-134 483.8 386 64.2
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 8.2e-134 481.1 393 63.6
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 3.1e-133 479.2 386 63.7
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.2e-132 477.2 391 65.2
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 2.0e-132 476.5 390 62.8
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.6e-132 476.1 391 64.5
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.0e-131 474.2 395 64.3
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.1e-130 470.7 344 71.2
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.9e-130 469.9 342 67.8
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.5e-130 469.5 299 78.6
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-129 467.2 389 64.8
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 3.0e-128 462.6 330 70.9
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.8e-125 453.4 388 61.1
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.0e-124 449.9 381 60.9
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 7.7e-124 448.0 322 68.9
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.1e-122 444.1 377 60.5
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.5e-122 443.0 420 59.8
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.2e-122 442.2 389 59.6
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.1e-121 438.3 350 64.6
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 2.3e-120 436.4 392 61.5
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.5e-119 433.7 355 62.3
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 4.1e-117 425.6 365 62.5
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 5.2e-112 408.7 302 67.5
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.5e-111 407.1 395 58.0
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 3.1e-109 399.4 389 57.1
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.4e-103 379.0 289 67.1
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 2.7e-100 369.8 321 60.1
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 3.6e-97 359.4 270 69.6
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.4e-88 330.9 232 71.1
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 1.9e-85 320.5 238 67.2
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.9e-85 320.5 232 70.7
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.4e-85 320.1 236 70.3
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 9.2e-85 318.2 393 51.4
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.0e-83 314.7 234 64.1
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.6e-81 307.4 227 66.5
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.3e-80 303.5 218 70.2
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 2.6e-79 300.1 284 53.9
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.5e-74 283.5 155 93.5
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.3e-74 283.1 177 83.6
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 4.3e-74 282.7 156 92.9
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 2.8e-73 280.0 155 92.3
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.4e-72 277.7 157 90.4
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.9e-69 267.3 214 60.3
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 7.1e-69 265.4 156 86.5
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.3e-67 260.4 145 89.0
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 3.4e-63 246.5 162 70.4
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.1e-60 237.3 141 84.4
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.3e-59 234.6 470 38.3
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.0e-59 233.4 133 91.0
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 3.9e-59 233.0 324 44.4
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 5.6e-58 229.2 184 65.2
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 7.6e-55 218.8 236 50.4
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 4.9e-54 216.1 182 61.5
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 9.3e-53 211.8 124 83.9
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.0e-47 194.1 132 80.3
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 1.7e-46 191.0 154 60.4
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.5e-44 183.3 188 52.7
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 3.7e-41 173.3 178 55.6
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.4e-40 171.4 99 88.9
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 4.1e-40 169.9 106 80.2
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 7.6e-39 165.6 209 48.3
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.0e-35 155.2 129 60.5
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 8.7e-35 152.1 223 44.4
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 2.9e-30 137.1 146 52.1
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 4.1e-24 116.7 215 36.3
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 2.0e-23 114.4 68 86.8
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.6e-20 104.8 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 8.8e-19 99.0 56 92.9
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 8.5e-14 82.4 195 31.3
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 1.2e-12 78.6 74 55.4
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 2.7e-12 77.4 57 64.9
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 4.4e-10 70.1 50 74.0
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.0e-07 61.2 54 57.4
Cc07_g20520 Coffea canephora HOM05D004012 ORTHO05D004752 2.6e-07 60.8 35 77.1


User provided reference genes

Program Settings