Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g15220 Coffea canephora HOM05D005837 ORTHO05D007594 5.8e-153 544.3 289 100.0
Solyc05g051590.3 Solanum lycopersicum HOM05D005837 ORTHO05D007594 1.9e-119 433.0 277 83.8
Sopen05g030040 Solanum pennellii HOM05D005837 ORTHO05D007594 5.4e-119 431.4 277 83.8
PGSC0003DMG400007222 Solanum tuberosum HOM05D005837 ORTHO05D007594 1.2e-118 430.3 277 83.4
MSTRG.15711 Avicennia marina HOM05D005837 ORTHO05D007594 3.5e-118 428.7 277 81.9
Lj4A891G48 Lonicera japonica HOM05D005837 ORTHO05D007594 3.5e-118 428.7 279 81.4
Potri.005G075600 Populus trichocarpa HOM05D005837 ORTHO05D007594 6.0e-118 427.9 275 80.7
COL.COLO4_09964 Corchorus olitorius HOM05D005837 ORTHO05D007594 1.1e-116 423.7 275 81.5
Duzib147G0987 Durio zibethinus HOM05D005837 ORTHO05D007594 2.5e-116 422.5 255 86.3
SGA_v2.0_scaffold34G13592 Striga asiatica HOM05D005837 ORTHO05D007594 3.3e-116 422.2 277 79.8
Migut.L00122 Erythranthe guttata HOM05D005837 ORTHO05D007594 4.3e-116 421.8 260 85.4
GSVIVG01002467001 Vitis vinifera HOM05D005837 ORTHO05D007594 4.3e-116 421.8 256 84.8
HanXRQChr10g0305351 Helianthus annuus HOM05D005837 ORTHO05D007594 1.6e-115 419.9 256 83.2
Thecc.01G101500 Theobroma cacao HOM05D005837 ORTHO05D007594 1.6e-115 419.9 256 84.8
SalBow5G3973 Salvia bowleyana HOM05D005837 ORTHO05D007594 3.6e-115 418.7 277 80.1
SalBow5G4805 Salvia bowleyana HOM05D005837 ORTHO05D007594 3.6e-115 418.7 277 80.1
CSS0040315 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 4.8e-115 418.3 277 79.8
Sabra05G0062100 Salix brachista HOM05D005837 ORTHO05D007594 4.8e-115 418.3 275 80.0
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 6.2e-115 417.9 269 79.9
Rhsim08G0010400 Rhododendron simsii HOM05D005837 ORTHO05D007594 1.1e-114 417.2 277 79.1
Gohir.D11G221614 Gossypium hirsutum HOM05D005837 ORTHO05D007594 2.4e-114 416.0 277 80.1
DCAR_014225 Daucus carota HOM05D005837 ORTHO05D007594 3.1e-114 415.6 277 78.3
Duzib264G0353 Durio zibethinus HOM05D005837 ORTHO05D007594 3.1e-114 415.6 256 83.6
Gohir.D11G055600 Gossypium hirsutum HOM05D005837 ORTHO05D007594 3.1e-114 415.6 256 83.2
Gorai.007G060800 Gossypium raimondii HOM05D005837 ORTHO05D007594 3.1e-114 415.6 256 82.8
Actinidia28231 Actinidia chinensis HOM05D005837 ORTHO05D007594 4.0e-114 415.2 277 78.7
Gorai.007G238700 Gossypium raimondii HOM05D005837 ORTHO05D007594 5.3e-114 414.8 277 79.8
QL06p049517 Quercus lobata HOM05D005837 ORTHO05D007594 9.0e-114 414.1 275 78.2
Atru.chr4.64 Acer truncatum HOM05D005837 ORTHO05D007594 1.2e-113 413.7 275 78.5
Gohir.A11G201400 Gossypium hirsutum HOM05D005837 ORTHO05D007594 2.6e-113 412.5 277 79.1
Nn5g30122 Nelumbo nucifera HOM05D005837 ORTHO05D007594 3.4e-113 412.1 258 81.0
TWI53G1711 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 4.5e-113 411.8 277 79.1
TWI77G0214 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 7.6e-113 411.0 277 79.4
Actinidia28865 Actinidia chinensis HOM05D005837 ORTHO05D007594 1.3e-112 410.2 271 78.6
Phvul.002G256000 Phaseolus vulgaris HOM05D005837 ORTHO05D007594 1.3e-112 410.2 269 78.8
PGR102G0026 Punica granatum HOM05D005837 ORTHO05D007594 1.3e-112 410.2 277 77.3
TAR376G0564 Trochodendron aralioides HOM05D005837 ORTHO05D007594 1.7e-112 409.8 277 78.0
Glyma.08G135800 Glycine max HOM05D005837 ORTHO05D007594 2.2e-112 409.5 269 79.9
HanXRQChr09g0260241 Helianthus annuus HOM05D005837 ORTHO05D007594 2.9e-112 409.1 270 76.3
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 3.8e-112 408.7 261 80.8
Prupe.6G187000 Prunus persica HOM05D005837 ORTHO05D007594 6.4e-112 407.9 277 76.9
BcaC01g02731 Brassica carinata HOM05D005837 ORTHO05D007594 8.4e-112 407.5 269 79.2
C03p61190 Brassica napus HOM05D005837 ORTHO05D007594 8.4e-112 407.5 269 79.2
BolC3t18379H Brassica oleracea HOM05D005837 ORTHO05D007594 8.4e-112 407.5 269 79.2
MD01G1029800 Malus domestica HOM05D005837 ORTHO05D007594 8.4e-112 407.5 277 76.9
CSS0022010 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 1.1e-111 407.1 269 78.4
Ciclev10025805m.g Citrus clementina HOM05D005837 ORTHO05D007594 1.4e-111 406.8 279 76.3
A06p31820 Brassica napus HOM05D005837 ORTHO05D007594 1.9e-111 406.4 261 80.8
Carub.0008s2584 Capsella rubella HOM05D005837 ORTHO05D007594 1.9e-111 406.4 261 80.5
arahy.Tifrunner.gnm1.ann1.UTAL3L Arachis hypogaea HOM05D005837 ORTHO05D007594 2.4e-111 406.0 258 81.4
BraA09t36542Z Brassica rapa HOM05D005837 ORTHO05D007594 3.2e-111 405.6 256 82.0
Hma1.2p1_0047F.1_g027810 Hydrangea macrophylla HOM05D005837 ORTHO05D007594 3.2e-111 405.6 258 81.8
CANSAT01G1018 Cannabis sativa HOM05D005837 ORTHO05D007594 4.2e-111 405.2 256 80.1
Sp2g28080 Schrenkiella parvula HOM05D005837 ORTHO05D007594 4.2e-111 405.2 261 80.1
BcaB02g09852 Brassica carinata HOM05D005837 ORTHO05D007594 9.3e-111 404.1 256 80.9
BcaB02g09853 Brassica carinata HOM05D005837 ORTHO05D007594 9.3e-111 404.1 256 80.9
A09p08910 Brassica napus HOM05D005837 ORTHO05D007594 1.2e-110 403.7 272 77.9
Lalb_Chr07g0185181 Lupinus albus HOM05D005837 ORTHO05D007594 1.2e-110 403.7 263 79.1
CARHR293770 Cardamine hirsuta HOM05D005837 ORTHO05D007594 3.5e-110 402.1 271 77.9
THA.LOC104798971 Tarenaya hassleriana HOM05D005837 ORTHO05D007594 3.5e-110 402.1 256 81.2
BcaB04g20002 Brassica carinata HOM05D005837 ORTHO05D007594 6.0e-110 401.4 271 77.1
PSO447G0182 Papaver somniferum HOM05D005837 ORTHO05D007594 6.0e-110 401.4 258 79.8
Cfa002663 Carpinus fangiana HOM05D005837 ORTHO05D007594 1.3e-109 400.2 280 75.7
Sc16g0005040 Simmondsia chinensis HOM05D005837 ORTHO05D007594 2.3e-109 399.4 280 75.4
BcaC04g23271 Brassica carinata HOM05D005837 ORTHO05D007594 3.9e-109 398.7 258 81.0
C09p10350 Brassica napus HOM05D005837 ORTHO05D007594 3.9e-109 398.7 258 81.0
BolC9t53935H Brassica oleracea HOM05D005837 ORTHO05D007594 3.9e-109 398.7 258 81.4
Thhalv10004589m.g Eutrema salsugineum HOM05D005837 ORTHO05D007594 3.9e-109 398.7 255 80.0
Eucgr.H04785 Eucalyptus grandis HOM05D005837 ORTHO05D007594 8.7e-109 397.5 275 74.5
PSO210G6484 Papaver somniferum HOM05D005837 ORTHO05D007594 8.7e-109 397.5 258 79.8
AL8G42500 Arabidopsis lyrata HOM05D005837 ORTHO05D007594 1.1e-108 397.1 261 79.3
Lj4g0008298 Lotus japonicus HOM05D005837 ORTHO05D007594 1.1e-108 397.1 258 78.7
CiPaw.04G099500 Carya illinoinensis HOM05D005837 ORTHO05D007594 1.5e-108 396.7 277 75.8
Ca_17737_v3 Cicer arietinum L. HOM05D005837 ORTHO05D007594 1.5e-108 396.7 258 78.7
FAN23G0829 Fragaria x ananassa HOM05D005837 ORTHO05D007594 1.9e-108 396.4 283 75.3
FAN19G3104 Fragaria x ananassa HOM05D005837 ORTHO05D007594 7.4e-108 394.4 285 74.4
FAN26G1738 Fragaria x ananassa HOM05D005837 ORTHO05D007594 9.6e-108 394.0 282 74.8
RcHm_v2.0_Chr2g0113501 Rosa chinensis HOM05D005837 ORTHO05D007594 9.6e-108 394.0 258 79.8
Aqoxy5G01893 Aquilegia oxysepala HOM05D005837 ORTHO05D007594 1.3e-107 393.7 258 77.5
Ah.03g143560 Amaranthus hybridus HOM05D005837 ORTHO05D007594 2.1e-107 392.9 256 78.5
ClCG01G018760 Citrullus lanatus HOM05D005837 ORTHO05D007594 2.8e-107 392.5 260 78.5
CsaV3_6G045430 Cucumis sativus L. HOM05D005837 ORTHO05D007594 2.8e-107 392.5 258 79.1
MD15G1324100 Malus domestica HOM05D005837 ORTHO05D007594 2.8e-107 392.5 277 75.1
Sed0019406 Sechium edule HOM05D005837 ORTHO05D007594 3.7e-107 392.1 267 76.4
MELO3C007756.2 Cucumis melo HOM05D005837 ORTHO05D007594 8.1e-107 391.0 277 74.7
FvH4_1g20890 Fragaria vesca HOM05D005837 ORTHO05D007594 8.1e-107 391.0 281 74.7
unitig_32.g10697 Utricularia gibba HOM05D005837 ORTHO05D007594 2.4e-106 389.4 277 72.9
HPP92_016352 Vanilla planifolia HOM05D005837 ORTHO05D007594 3.1e-106 389.0 258 75.6
MBI05_g19355_MAGBIO Magnolia biondii HOM05D005837 ORTHO05D007594 4.0e-106 388.7 255 77.6
ATR0118G022 Amborella trichopoda HOM05D005837 ORTHO05D007594 5.3e-106 388.3 256 74.6
AT5G65000 Arabidopsis thaliana HOM05D005837 ORTHO05D007594 5.3e-106 388.3 261 78.2
FAN28G0473 Fragaria x ananassa HOM05D005837 ORTHO05D007594 5.3e-106 388.3 278 74.8
TPR.G6228 Trifolium pratense HOM05D005837 ORTHO05D007594 5.3e-106 388.3 258 77.1
Dinv21909 Davidia involucrata HOM05D005837 ORTHO05D007594 1.5e-105 386.7 258 77.9
Nitab4.5_0000715g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 1.5e-105 386.7 281 75.4
Aa31LG1G16930 Aethionema arabicum HOM05D005837 ORTHO05D007594 3.4e-105 385.6 262 76.0
Peaxi162Scf00295g01018 Petunia axillaris HOM05D005837 ORTHO05D007594 3.4e-105 385.6 258 80.2
Gohir.A11G052200 Gossypium hirsutum HOM05D005837 ORTHO05D007594 5.8e-105 384.8 256 78.5
Medtr8g090230 Medicago truncatula HOM05D005837 ORTHO05D007594 1.3e-104 383.6 263 74.5
EL10Ac6g15104 Beta vulgaris HOM05D005837 ORTHO05D007594 2.2e-104 382.9 280 71.8
Dinv13188 Davidia involucrata HOM05D005837 ORTHO05D007594 1.9e-103 379.8 253 78.7
Potri.007G092800 Populus trichocarpa HOM05D005837 ORTHO05D007594 9.3e-103 377.5 250 77.6
ECA232G4987 Erigeron canadensis HOM05D005837 ORTHO05D007594 4.3e-100 368.6 231 82.3
Lsat_1_v5_gn_4_141261 Lactuca sativa HOM05D005837 ORTHO05D007594 2.8e-99 365.9 229 83.0
Nitab4.5_0006967g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 6.2e-99 364.8 281 72.6
Oeu053549.4 Olea europaea HOM05D005837 ORTHO05D007594 9.0e-98 360.9 275 71.6
Manes.12G134900 Manihot esculenta HOM05D005837 ORTHO05D007594 1.2e-97 360.5 220 85.0
Haze_24932 Corylus avellana HOM05D005837 ORTHO05D007594 2.0e-97 359.8 359 57.9
AUR62003793 Chenopodium quinoa HOM05D005837 ORTHO05D007594 3.8e-96 355.5 251 73.3
AUR62002009 Chenopodium quinoa HOM05D005837 ORTHO05D007594 8.4e-96 354.4 234 78.6
SHI29446 Sapria himalayana HOM05D005837 ORTHO05D007594 4.2e-95 352.1 271 65.3
Zm00001eb244760 Zea mays HOM05D005837 ORTHO05D007594 3.0e-93 345.9 256 71.5
Hund16285 Selenicereus undatus HOM05D005837 ORTHO05D007594 1.3e-91 340.5 275 68.0
Psat7g054880 Pisum sativum HOM05D005837 ORTHO05D007594 4.8e-91 338.6 232 73.3
Zm00001eb182830 Zea mays HOM05D005837 ORTHO05D007594 4.3e-84 315.5 233 70.0
SEGI_29496 Sequoiadendron giganteum HOM05D005837 ORTHO05D007594 2.8e-83 312.8 231 72.3
SMO169G0194 Selaginella moellendorffii HOM05D005837 ORTHO05D007594 2.0e-81 306.6 249 63.9
Pp3c3_32740 Physcomitrium patens HOM05D005837 ORTHO05D007594 4.7e-78 295.4 250 64.0
Mapoly0120s0005 Marchantia polymorpha HOM05D005837 ORTHO05D007594 2.9e-64 249.6 197 66.5
CDE10G0517 Ceratophyllum demersum HOM05D005837 ORTHO05D007594 1.1e-63 247.7 258 54.3
CBR_g39403 Chara braunii HOM05D005837 ORTHO05D007594 3.2e-63 246.1 251 52.2
vmacro18603 Vaccinium macrocarpon HOM05D005837 ORTHO05D007594 1.0e-56 224.6 139 79.9
RcHm_v2.0_Chr3g0453281 Rosa chinensis HOM05D005837 ORTHO05D007594 4.4e-44 182.6 113 80.5
RcHm_v2.0_Chr3g0467111 Rosa chinensis HOM05D005837 ORTHO05D007594 4.4e-44 182.6 113 80.5
MBI10_g33306_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 1.3e-40 171.0 116 70.7
Oeu002173.1 Olea europaea HOM05D005837 ORTHO05D007594 8.6e-40 168.3 261 42.5
Os02g0573300 Oryza sativa ssp. japonica HOM05D005837 ORTHO05D007594 2.6e-36 156.8 116 72.4
AagrBONN_evm.TU.Sc2ySwM_117.3229 Anthoceros agrestis HOM05D005837 ORTHO05D007594 5.8e-36 155.6 179 48.6
CAN.G151.30 Capsicum annuum HOM05D005837 ORTHO05D007594 1.1e-34 151.4 92 87.0
MBI10_g27985_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 2.3e-32 143.7 122 62.3
MCO05G725 Micromonas commoda HOM05D005837 ORTHO05D007594 1.6e-30 137.5 258 38.4
COL.COLO4_30268 Corchorus olitorius HOM05D005837 ORTHO05D161296 3.2e-10 70.1 99 44.4
MCO17G012 Micromonas commoda HOM05D001098 ORTHO05D034890 1.0e-08 65.1 235 24.7
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 2.3e-08 63.9 265 25.7
Glyma.14G000600 Glycine max HOM05D001098 ORTHO05D002527 5.1e-08 62.8 260 25.4
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 6.6e-08 62.4 268 25.4
Aqoxy2G01309 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 1.9e-07 60.8 262 26.3
Aqoxy6G01547 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 1.9e-07 60.8 262 26.3
arahy.Tifrunner.gnm1.ann1.N1X7B2 Arachis hypogaea HOM05D001098 ORTHO05D002527 2.5e-07 60.5 263 24.7
arahy.Tifrunner.gnm1.ann1.7NF1VE Arachis hypogaea HOM05D001098 ORTHO05D002527 3.3e-07 60.1 263 24.7
Phvul.008G292800 Phaseolus vulgaris HOM05D001098 ORTHO05D002527 3.3e-07 60.1 265 25.7
Sed0023457 Sechium edule HOM05D001098 ORTHO05D002527 3.3e-07 60.1 268 23.5
PGSC0003DMG400016250 Solanum tuberosum HOM05D001098 ORTHO05D002527 3.3e-07 60.1 266 24.4
TWI79G1444 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 3.3e-07 60.1 271 25.8
VMungo0647G1862 Vigna mungo HOM05D001098 ORTHO05D002527 3.3e-07 60.1 265 24.9
Sed0023927 Sechium edule HOM05D001098 ORTHO05D002527 4.3e-07 59.7 262 23.3
TWI75G1677 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 7.3e-07 58.9 272 26.1
MSTRG.16957 Avicennia marina HOM05D001098 ORTHO05D002527 9.6e-07 58.5 265 23.8
CiPaw.05G093900 Carya illinoinensis HOM05D001098 ORTHO05D002527 9.6e-07 58.5 292 24.7
CiPaw.06G114700 Carya illinoinensis HOM05D001098 ORTHO05D002527 9.6e-07 58.5 262 24.0
Oeu012219.1 Olea europaea HOM05D001098 ORTHO05D002527 9.6e-07 58.5 267 24.7
PGR142G3259 Punica granatum HOM05D001098 ORTHO05D002527 9.6e-07 58.5 275 22.9
ClCG02G010830 Citrullus lanatus HOM05D001098 ORTHO05D002527 1.3e-06 58.2 262 23.3
CsaV3_6G010050 Cucumis sativus L. HOM05D001098 ORTHO05D002527 1.3e-06 58.2 262 23.3
Manes.18G113200 Manihot esculenta HOM05D001098 ORTHO05D002527 1.3e-06 58.2 259 23.6
Haze_10071 Corylus avellana HOM05D001098 ORTHO05D002527 1.6e-06 57.8 269 24.9
Solyc11g008590.2 Solanum lycopersicum HOM05D001098 ORTHO05D002527 1.6e-06 57.8 266 24.1
Sopen11g004380 Solanum pennellii HOM05D001098 ORTHO05D002527 1.6e-06 57.8 266 24.1
Manes.02G204100 Manihot esculenta HOM05D001098 ORTHO05D002527 2.1e-06 57.4 259 23.2
PSO541G0403 Papaver somniferum HOM05D001098 ORTHO05D002527 2.8e-06 57.0 262 25.6
Haze_26352 Corylus avellana HOM05D001098 ORTHO05D034890 3.6e-06 56.6 234 23.1
arahy.Tifrunner.gnm1.ann1.D18LN8 Arachis hypogaea HOM05D000266 ORTHO05D000819 4.8e-06 56.2 153 28.8
arahy.Tifrunner.gnm1.ann1.IWVL8G Arachis hypogaea HOM05D000266 ORTHO05D000819 4.8e-06 56.2 153 28.8
CANSAT25G0204 Cannabis sativa HOM05D001098 ORTHO05D002527 4.8e-06 56.2 263 24.0
Haze_26763 Corylus avellana HOM05D001098 ORTHO05D034890 4.8e-06 56.2 265 23.8
HanXRQChr16g0515181 Helianthus annuus HOM05D001098 ORTHO05D002527 4.8e-06 56.2 260 23.5
TAR381G1518 Trochodendron aralioides HOM05D001098 ORTHO05D002527 4.8e-06 56.2 280 24.6
Zm00001eb325140 Zea mays HOM05D001098 ORTHO05D002527 4.8e-06 56.2 263 22.8
Dinv41864 Davidia involucrata HOM05D001098 ORTHO05D002527 6.2e-06 55.8 262 24.4
Lalb_Chr10g0107701 Lupinus albus HOM05D001098 ORTHO05D002527 6.2e-06 55.8 262 23.7
COL.COLO4_34319 Corchorus olitorius HOM05D001098 ORTHO05D002527 8.1e-06 55.5 270 25.2
Os07g0573700 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D002527 8.1e-06 55.5 260 23.1


User provided reference genes

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