Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g15210 Coffea canephora HOM05D005837 ORTHO05D024186 2.9e-35 151.4 78 100.0
Ah.03g143560 Amaranthus hybridus HOM05D005837 ORTHO05D007594 2.3e-19 98.6 54 90.7
EL10Ac6g15104 Beta vulgaris HOM05D005837 ORTHO05D007594 2.3e-19 98.6 54 90.7
ECA232G4987 Erigeron canadensis HOM05D005837 ORTHO05D007594 3.8e-19 97.8 54 88.9
Hma1.2p1_0047F.1_g027810 Hydrangea macrophylla HOM05D005837 ORTHO05D007594 6.6e-19 97.1 54 87.0
Prupe.6G187000 Prunus persica HOM05D005837 ORTHO05D007594 6.6e-19 97.1 54 85.2
GSVIVG01002467001 Vitis vinifera HOM05D005837 ORTHO05D007594 8.6e-19 96.7 54 85.2
Lsat_1_v5_gn_4_141261 Lactuca sativa HOM05D005837 ORTHO05D007594 1.1e-18 96.3 53 84.9
Hund16285 Selenicereus undatus HOM05D005837 ORTHO05D007594 1.1e-18 96.3 54 85.2
TPR.G6228 Trifolium pratense HOM05D005837 ORTHO05D007594 1.1e-18 96.3 54 85.2
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 1.1e-18 96.3 54 83.3
MD01G1029800 Malus domestica HOM05D005837 ORTHO05D007594 1.5e-18 95.9 56 83.9
Eucgr.H04785 Eucalyptus grandis HOM05D005837 ORTHO05D007594 1.9e-18 95.5 54 85.2
Lj4g0008298 Lotus japonicus HOM05D005837 ORTHO05D007594 1.9e-18 95.5 54 85.2
Thecc.01G101500 Theobroma cacao HOM05D005837 ORTHO05D007594 1.9e-18 95.5 54 85.2
FAN26G1738 Fragaria x ananassa HOM05D005837 ORTHO05D007594 3.3e-18 94.7 69 69.6
HanXRQChr10g0305351 Helianthus annuus HOM05D005837 ORTHO05D007594 3.3e-18 94.7 52 86.5
Aqoxy5G01893 Aquilegia oxysepala HOM05D005837 ORTHO05D007594 4.2e-18 94.4 54 83.3
AUR62002009 Chenopodium quinoa HOM05D005837 ORTHO05D007594 4.2e-18 94.4 56 85.7
MELO3C007756.2 Cucumis melo HOM05D005837 ORTHO05D007594 4.2e-18 94.4 52 82.7
FAN23G0829 Fragaria x ananassa HOM05D005837 ORTHO05D007594 4.2e-18 94.4 55 81.8
Gohir.A11G052200 Gossypium hirsutum HOM05D005837 ORTHO05D007594 4.2e-18 94.4 54 83.3
Gohir.D11G055600 Gossypium hirsutum HOM05D005837 ORTHO05D007594 4.2e-18 94.4 54 83.3
Gorai.007G060800 Gossypium raimondii HOM05D005837 ORTHO05D007594 4.2e-18 94.4 54 83.3
MBI05_g19355_MAGBIO Magnolia biondii HOM05D005837 ORTHO05D007594 4.2e-18 94.4 54 83.3
Nitab4.5_0000715g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 4.2e-18 94.4 54 83.3
Peaxi162Scf00295g01018 Petunia axillaris HOM05D005837 ORTHO05D007594 4.2e-18 94.4 52 86.5
Phvul.002G256000 Phaseolus vulgaris HOM05D005837 ORTHO05D007594 4.2e-18 94.4 54 83.3
Rhsim08G0010400 Rhododendron simsii HOM05D005837 ORTHO05D007594 4.2e-18 94.4 54 83.3
MSTRG.15711 Avicennia marina HOM05D005837 ORTHO05D007594 5.5e-18 94.0 54 83.3
Duzib264G0353 Durio zibethinus HOM05D005837 ORTHO05D007594 5.5e-18 94.0 54 83.3
FvH4_1g20890 Fragaria vesca HOM05D005837 ORTHO05D007594 5.5e-18 94.0 54 81.5
Nitab4.5_0006967g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 5.5e-18 94.0 52 84.6
RcHm_v2.0_Chr2g0113501 Rosa chinensis HOM05D005837 ORTHO05D007594 5.5e-18 94.0 54 81.5
CSS0040315 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 7.2e-18 93.6 54 83.3
Ca_17737_v3 Cicer arietinum L. HOM05D005837 ORTHO05D007594 7.2e-18 93.6 54 81.5
Ciclev10025805m.g Citrus clementina HOM05D005837 ORTHO05D007594 7.2e-18 93.6 54 79.6
Glyma.08G135800 Glycine max HOM05D005837 ORTHO05D007594 7.2e-18 93.6 54 81.5
Sc16g0005040 Simmondsia chinensis HOM05D005837 ORTHO05D007594 7.2e-18 93.6 54 83.3
TAR376G0564 Trochodendron aralioides HOM05D005837 ORTHO05D007594 7.2e-18 93.6 54 87.0
Actinidia28865 Actinidia chinensis HOM05D005837 ORTHO05D007594 9.5e-18 93.2 54 83.3
AUR62003793 Chenopodium quinoa HOM05D005837 ORTHO05D007594 9.5e-18 93.2 55 85.5
Medtr8g090230 Medicago truncatula HOM05D005837 ORTHO05D007594 9.5e-18 93.2 54 81.5
Oeu002173.1 Olea europaea HOM05D005837 ORTHO05D007594 9.5e-18 93.2 52 86.5
Oeu053549.4 Olea europaea HOM05D005837 ORTHO05D007594 9.5e-18 93.2 52 86.5
Duzib147G0987 Durio zibethinus HOM05D005837 ORTHO05D007594 1.2e-17 92.8 54 83.3
Nn5g30122 Nelumbo nucifera HOM05D005837 ORTHO05D007594 1.6e-17 92.4 54 81.5
PSO210G6484 Papaver somniferum HOM05D005837 ORTHO05D007594 1.6e-17 92.4 54 79.6
PSO447G0182 Papaver somniferum HOM05D005837 ORTHO05D007594 1.6e-17 92.4 54 79.6
vmacro18602 Vaccinium macrocarpon HOM05D005837 ORTHO05D024186 1.6e-17 92.4 52 84.6
MD15G1324100 Malus domestica HOM05D005837 ORTHO05D007594 2.1e-17 92.0 56 76.8
Migut.L00122 Erythranthe guttata HOM05D005837 ORTHO05D007594 2.8e-17 91.7 54 83.3
Gohir.D11G221614 Gossypium hirsutum HOM05D005837 ORTHO05D007594 2.8e-17 91.7 54 81.5
Gorai.007G238700 Gossypium raimondii HOM05D005837 ORTHO05D007594 2.8e-17 91.7 54 81.5
Haze_24932 Corylus avellana HOM05D005837 ORTHO05D007594 3.6e-17 91.3 54 79.6
PGR102G0026 Punica granatum HOM05D005837 ORTHO05D007594 3.6e-17 91.3 54 79.6
QL06p049517 Quercus lobata HOM05D005837 ORTHO05D007594 3.6e-17 91.3 52 78.8
CANSAT01G1018 Cannabis sativa HOM05D005837 ORTHO05D007594 4.7e-17 90.9 52 78.8
Gohir.A11G201400 Gossypium hirsutum HOM05D005837 ORTHO05D007594 4.7e-17 90.9 54 79.6
TWI53G1711 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 4.7e-17 90.9 54 81.5
SGA_v2.0_scaffold34G13592 Striga asiatica HOM05D005837 ORTHO05D007594 6.1e-17 90.5 51 84.3
Cfa002663 Carpinus fangiana HOM05D005837 ORTHO05D007594 8.0e-17 90.1 54 77.8
SalBow5G3973 Salvia bowleyana HOM05D005837 ORTHO05D007594 8.0e-17 90.1 54 83.3
SalBow5G4805 Salvia bowleyana HOM05D005837 ORTHO05D007594 8.0e-17 90.1 54 83.3
FAN28G0473 Fragaria x ananassa HOM05D005837 ORTHO05D007594 1.4e-16 89.4 54 77.8
Atru.chr4.64 Acer truncatum HOM05D005837 ORTHO05D007594 1.8e-16 89.0 54 81.5
HanXRQChr09g0260241 Helianthus annuus HOM05D005837 ORTHO05D007594 1.8e-16 89.0 54 79.6
Manes.12G134900 Manihot esculenta HOM05D005837 ORTHO05D007594 1.8e-16 89.0 52 78.8
Potri.005G075600 Populus trichocarpa HOM05D005837 ORTHO05D007594 1.8e-16 89.0 54 79.6
arahy.Tifrunner.gnm1.ann1.UTAL3L Arachis hypogaea HOM05D005837 ORTHO05D007594 2.3e-16 88.6 52 75.0
CiPaw.04G099500 Carya illinoinensis HOM05D005837 ORTHO05D007594 2.3e-16 88.6 54 77.8
COL.COLO4_09964 Corchorus olitorius HOM05D005837 ORTHO05D007594 3.0e-16 88.2 56 78.6
Sopen05g030040 Solanum pennellii HOM05D005837 ORTHO05D007594 3.0e-16 88.2 52 82.7
PGSC0003DMG400007222 Solanum tuberosum HOM05D005837 ORTHO05D007594 3.0e-16 88.2 52 82.7
TWI77G0214 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 5.2e-16 87.4 54 77.8
Lalb_Chr07g0185181 Lupinus albus HOM05D005837 ORTHO05D007594 6.8e-16 87.0 54 77.8
Sabra05G0062100 Salix brachista HOM05D005837 ORTHO05D007594 6.8e-16 87.0 54 77.8
Solyc05g051590.3 Solanum lycopersicum HOM05D005837 ORTHO05D007594 6.8e-16 87.0 52 82.7
BcaB04g20002 Brassica carinata HOM05D005837 ORTHO05D007594 1.2e-15 86.3 52 80.8
Zm00001eb182830 Zea mays HOM05D005837 ORTHO05D007594 1.2e-15 86.3 54 79.6
ATR0118G022 Amborella trichopoda HOM05D005837 ORTHO05D007594 1.5e-15 85.9 54 75.9
THA.LOC104798971 Tarenaya hassleriana HOM05D005837 ORTHO05D007594 1.5e-15 85.9 52 80.8
BcaC04g23271 Brassica carinata HOM05D005837 ORTHO05D007594 2.0e-15 85.5 52 80.8
C09p10350 Brassica napus HOM05D005837 ORTHO05D007594 2.0e-15 85.5 52 80.8
BolC9t53935H Brassica oleracea HOM05D005837 ORTHO05D007594 2.0e-15 85.5 52 80.8
Sp2g28080 Schrenkiella parvula HOM05D005837 ORTHO05D007594 2.0e-15 85.5 54 79.6
BcaB02g09852 Brassica carinata HOM05D005837 ORTHO05D007594 2.6e-15 85.1 52 80.8
BcaB02g09853 Brassica carinata HOM05D005837 ORTHO05D007594 2.6e-15 85.1 52 80.8
A06p31820 Brassica napus HOM05D005837 ORTHO05D007594 2.6e-15 85.1 52 80.8
A09p08910 Brassica napus HOM05D005837 ORTHO05D007594 2.6e-15 85.1 52 80.8
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 2.6e-15 85.1 52 80.8
BraA09t36542Z Brassica rapa HOM05D005837 ORTHO05D007594 2.6e-15 85.1 52 80.8
Thhalv10004589m.g Eutrema salsugineum HOM05D005837 ORTHO05D007594 2.6e-15 85.1 52 80.8
Aa31LG1G16930 Aethionema arabicum HOM05D005837 ORTHO05D007594 4.4e-15 84.3 52 78.8
HPP92_016352 Vanilla planifolia HOM05D005837 ORTHO05D007594 4.4e-15 84.3 52 78.8
BcaC01g02731 Brassica carinata HOM05D005837 ORTHO05D007594 5.7e-15 84.0 52 78.8
C03p61190 Brassica napus HOM05D005837 ORTHO05D007594 5.7e-15 84.0 52 78.8
BolC3t18379H Brassica oleracea HOM05D005837 ORTHO05D007594 5.7e-15 84.0 52 78.8
CSS0022010 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 5.7e-15 84.0 54 77.8
Carub.0008s2584 Capsella rubella HOM05D005837 ORTHO05D007594 5.7e-15 84.0 52 78.8
CARHR293770 Cardamine hirsuta HOM05D005837 ORTHO05D007594 5.7e-15 84.0 52 78.8
AT5G65000 Arabidopsis thaliana HOM05D005837 ORTHO05D007594 7.5e-15 83.6 52 78.8
unitig_32.g10697 Utricularia gibba HOM05D005837 ORTHO05D007594 7.5e-15 83.6 54 72.2
Zm00001eb244760 Zea mays HOM05D005837 ORTHO05D007594 1.3e-14 82.8 52 75.0
AL8G42500 Arabidopsis lyrata HOM05D005837 ORTHO05D007594 6.3e-14 80.5 52 76.9
ClCG01G018760 Citrullus lanatus HOM05D005837 ORTHO05D007594 1.4e-13 79.3 45 80.0
SHI29446 Sapria himalayana HOM05D005837 ORTHO05D007594 4.1e-13 77.8 54 68.5
SEGI_29496 Sequoiadendron giganteum HOM05D005837 ORTHO05D007594 4.1e-13 77.8 54 72.2
DCAR_014225 Daucus carota HOM05D005837 ORTHO05D007594 2.0e-12 75.5 54 68.5
Pp3c3_32740 Physcomitrium patens HOM05D005837 ORTHO05D007594 6.6e-11 70.5 56 60.7
Sed0019406 Sechium edule HOM05D005837 ORTHO05D007594 2.8e-09 65.1 36 86.1
AagrBONN_evm.TU.Sc2ySwM_117.3229 Anthoceros agrestis HOM05D005837 ORTHO05D007594 4.7e-09 64.3 49 63.3
CsaV3_6G045430 Cucumis sativus L. HOM05D005837 ORTHO05D007594 8.0e-09 63.5 34 88.2
Mapoly0120s0005 Marchantia polymorpha HOM05D005837 ORTHO05D007594 8.0e-09 63.5 53 64.2
SMO169G0194 Selaginella moellendorffii HOM05D005837 ORTHO05D007594 1.4e-08 62.8 53 60.4
BolC2t11972H Brassica oleracea HOM05D005837 ORTHO05D024186 2.3e-08 62.0 49 61.2
RcHm_v2.0_Chr3g0453281 Rosa chinensis HOM05D005837 ORTHO05D007594 1.2e-07 59.7 34 73.5


User provided reference genes

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