Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 5.5e-202 707.6 407 100.0
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 2.9e-158 562.4 423 78.3
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 2.1e-156 556.2 414 79.5
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 3.8e-150 535.4 410 74.4
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 6.0e-148 528.1 415 78.1
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 3.6e-145 518.8 449 70.8
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.4e-144 516.9 427 73.1
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 3.1e-144 515.8 437 73.7
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 2.6e-143 512.7 477 65.0
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 2.6e-143 512.7 425 68.9
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 5.8e-143 511.5 427 74.2
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 5.8e-143 511.5 428 73.6
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 1.7e-142 510.0 412 73.3
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 1.7e-142 510.0 435 73.1
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 2.9e-142 509.2 403 76.4
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 4.9e-142 508.4 431 72.4
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 8.4e-142 507.7 435 72.4
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-141 506.9 394 76.6
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 1.4e-141 506.9 445 71.2
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 2.7e-140 502.7 439 70.8
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 2.7e-140 502.7 430 72.8
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 3.5e-140 502.3 396 78.5
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 4.6e-140 501.9 494 63.0
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 4.6e-140 501.9 440 71.1
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 7.9e-140 501.1 458 67.2
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 1.3e-139 500.4 441 71.9
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 1.3e-139 500.4 442 73.5
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 2.3e-139 499.6 418 74.4
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 8.7e-139 497.7 447 71.6
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 1.5e-138 496.9 420 70.0
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 1.9e-138 496.5 408 67.6
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 3.3e-138 495.7 431 71.7
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 2.8e-137 492.7 435 73.6
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 3.7e-137 492.3 437 71.2
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 4.8e-137 491.9 433 72.3
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.1e-136 490.7 430 73.7
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 1.2e-135 487.3 441 67.8
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 3.4e-135 485.7 451 70.1
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 4.5e-135 485.3 457 68.3
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 7.6e-135 484.6 264 87.9
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 1.3e-134 483.8 404 74.5
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 1.4e-133 480.3 437 68.9
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 4.2e-133 478.8 445 69.2
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 5.5e-133 478.4 420 71.0
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 2.1e-132 476.5 436 65.8
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 2.7e-132 476.1 435 70.1
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 4.6e-132 475.3 442 69.9
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 3.0e-131 472.6 436 70.9
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 5.1e-131 471.9 484 63.8
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 8.7e-131 471.1 416 71.2
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 4.3e-130 468.8 413 73.1
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 9.6e-130 467.6 413 71.2
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.3e-129 467.2 390 69.0
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 2.8e-129 466.1 423 67.4
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 6.2e-129 464.9 447 67.3
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 6.2e-129 464.9 407 69.3
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 3.1e-128 462.6 407 71.0
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 4.0e-128 462.2 407 64.1
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 6.9e-128 461.5 399 60.4
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 9.0e-128 461.1 410 66.8
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 1.2e-127 460.7 447 66.9
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 7.6e-127 458.0 413 68.3
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.0e-126 457.6 415 69.2
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.0e-126 457.6 423 71.4
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 1.3e-126 457.2 419 71.6
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 1.7e-126 456.8 430 70.9
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 2.9e-126 456.1 542 54.8
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 6.5e-126 454.9 523 56.2
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 3.2e-125 452.6 407 67.1
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.2e-125 452.2 426 65.3
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 5.5e-125 451.8 431 69.4
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 7.1e-125 451.4 457 62.1
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 7.1e-125 451.4 428 70.3
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 9.3e-125 451.1 413 67.3
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.6e-124 450.3 411 68.6
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 1.6e-124 450.3 407 68.6
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 2.1e-124 449.9 493 61.3
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 2.1e-124 449.9 244 87.7
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 4.6e-124 448.7 419 70.4
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.6e-124 448.7 410 70.5
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 7.9e-124 448.0 257 84.4
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 2.3e-123 446.4 410 64.1
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 3.9e-123 445.7 390 61.3
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 6.7e-123 444.9 443 65.5
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 9.7e-122 441.0 425 64.9
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 1.3e-121 440.7 411 70.8
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 1.3e-121 440.7 412 61.2
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 2.2e-121 439.9 458 62.0
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 4.8e-121 438.7 405 68.9
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 1.8e-120 436.8 413 66.8
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 5.3e-120 435.3 472 64.6
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.5e-119 433.7 418 67.7
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 1.4e-117 427.2 414 64.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 4.2e-117 425.6 241 83.8
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 1.6e-116 423.7 413 64.9
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 8.2e-113 411.4 229 83.4
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 6.1e-108 395.2 453 53.2
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 6.3e-105 385.2 228 78.5
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 1.1e-104 384.4 313 81.2
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 2.0e-103 380.2 366 69.1
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 8.5e-102 374.8 239 72.4
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 8.5e-102 374.8 239 72.4
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 9.4e-101 371.3 418 59.1
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 3.6e-100 369.4 230 75.7
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 3.6e-100 369.4 465 47.3
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 6.7e-99 365.2 389 67.4
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 4.8e-97 359.0 391 62.7
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.2e-82 311.2 340 66.2
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.6e-82 310.1 154 88.3
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.7e-78 297.4 148 88.5
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.8e-76 290.0 207 68.1
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.5e-69 267.7 136 85.3
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 9.5e-69 265.0 350 58.9
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 1.5e-66 257.7 328 61.3
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.4e-66 256.1 296 61.1
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 9.8e-66 255.0 318 67.6
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 1.7e-65 254.2 361 53.7
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 4.1e-64 249.6 244 53.7
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 4.1e-64 249.6 146 80.1
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 8.6e-62 241.9 218 53.2
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 6.2e-60 235.7 311 60.1
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 3.1e-59 233.4 174 67.8
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 3.1e-59 233.4 141 78.0
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 8.3e-57 225.3 114 91.2
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 8.3e-57 225.3 264 46.6
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 4.7e-52 209.5 277 63.5
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 1.1e-48 198.4 294 61.9
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 9.2e-48 195.3 292 63.4
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 1.0e-46 191.8 101 86.1
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.3e-46 191.4 401 43.6
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 3.3e-45 186.8 96 84.4
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 6.2e-44 182.6 96 88.5
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 1.2e-42 178.3 98 83.7
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.4e-40 171.4 130 61.5
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.4e-40 170.6 263 63.1
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 5.4e-40 169.5 96 82.3
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 5.6e-37 159.5 84 84.5
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.3e-36 158.3 300 50.0
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 6.2e-36 156.0 83 83.1
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.1e-35 153.7 85 84.7
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 7.6e-34 149.1 80 87.5
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 6.4e-33 146.0 236 60.6
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 3.2e-32 143.7 80 85.0
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 4.6e-31 139.8 79 82.3
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.1e-29 135.2 238 52.1
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.1e-28 131.0 255 56.1
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.8e-25 120.2 83 72.3
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 8.4e-25 119.0 77 79.2
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 1.9e-21 107.8 74 68.9
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 1.1e-19 102.1 68 67.6
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 2.4e-19 100.9 60 80.0
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 4.6e-15 86.7 63 63.5
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 4.8e-12 76.6 43 83.7
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 6.2e-12 76.3 61 60.7
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 4.1e-11 73.6 239 47.3
CDE02G0875 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.5e-07 60.5 61 59.0
Os06g0143600 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 1.3e-06 58.5 41 70.7


User provided reference genes

Program Settings