Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g11730 Coffea canephora HOM05D001343 ORTHO05D002008 3.9e-41 171.0 85 100.0
MELO3C007975.2 Cucumis melo HOM05D001343 ORTHO05D002008 2.5e-32 141.7 81 79.0
CsaV3_6G047860 Cucumis sativus L. HOM05D001343 ORTHO05D002008 5.6e-32 140.6 81 77.8
Dinv40179 Davidia involucrata HOM05D001343 ORTHO05D002008 7.4e-32 140.2 81 79.0
Glyma.01G159400 Glycine max HOM05D001343 ORTHO05D002008 7.4e-32 140.2 81 79.0
Sopen02g027510 Solanum pennellii HOM05D001343 ORTHO05D002008 9.6e-32 139.8 81 76.5
Glyma.11G085100 Glycine max HOM05D001343 ORTHO05D002008 2.1e-31 138.7 81 79.0
Lj2A497G57 Lonicera japonica HOM05D001343 ORTHO05D002008 2.1e-31 138.7 81 74.1
Lalb_Chr05g0211871 Lupinus albus HOM05D001343 ORTHO05D002008 2.1e-31 138.7 81 75.3
Rhsim08G0027700 Rhododendron simsii HOM05D001343 ORTHO05D002008 2.1e-31 138.7 81 80.2
Sed0018868 Sechium edule HOM05D001343 ORTHO05D002008 2.1e-31 138.7 81 76.5
Solyc02g082750.4 Solanum lycopersicum HOM05D001343 ORTHO05D002008 2.8e-31 138.3 81 75.3
Lj4A234G53 Lonicera japonica HOM05D001343 ORTHO05D002008 3.7e-31 137.9 81 79.0
Lj2g0005015 Lotus japonicus HOM05D001343 ORTHO05D002008 3.7e-31 137.9 81 76.5
Medtr5g023960 Medicago truncatula HOM05D001343 ORTHO05D002008 3.7e-31 137.9 81 75.3
PGSC0003DMG400001569 Solanum tuberosum HOM05D001343 ORTHO05D002008 3.7e-31 137.9 81 75.3
vmacro18458 Vaccinium macrocarpon HOM05D001343 ORTHO05D002008 3.7e-31 137.9 81 79.0
Lalb_Chr16g0377231 Lupinus albus HOM05D001343 ORTHO05D002008 4.8e-31 137.5 81 75.3
Phvul.002G115600 Phaseolus vulgaris HOM05D001343 ORTHO05D002008 4.8e-31 137.5 81 76.5
TPR.G8373 Trifolium pratense HOM05D001343 ORTHO05D002008 4.8e-31 137.5 81 75.3
Ca_24972_v3 Cicer arietinum L. HOM05D001343 ORTHO05D002008 8.1e-31 136.7 81 76.5
Oeu012448.1 Olea europaea HOM05D001343 ORTHO05D002008 8.1e-31 136.7 81 77.8
Thecc.01G006400 Theobroma cacao HOM05D001343 ORTHO05D002008 8.1e-31 136.7 81 77.8
VMungo1215G1069 Vigna mungo HOM05D001343 ORTHO05D002008 8.1e-31 136.7 81 76.5
CSS0015744 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 1.1e-30 136.3 81 75.3
CSS0026297 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 1.1e-30 136.3 81 75.3
COL.COLO4_22544 Corchorus olitorius HOM05D001343 ORTHO05D002008 1.1e-30 136.3 81 75.3
Manes.01G154500 Manihot esculenta HOM05D001343 ORTHO05D002008 1.1e-30 136.3 81 75.3
Duzib147G0778 Durio zibethinus HOM05D001343 ORTHO05D002008 1.4e-30 136.0 81 76.5
Solyc02g038819.1 Solanum lycopersicum HOM05D001343 ORTHO05D002008 1.4e-30 136.0 81 76.5
Sopen02g012690 Solanum pennellii HOM05D001343 ORTHO05D002008 1.4e-30 136.0 81 76.5
Hma1.2p1_0085F.1_g044840 Hydrangea macrophylla HOM05D001343 ORTHO05D002008 1.8e-30 135.6 84 76.2
TAR376G0462 Trochodendron aralioides HOM05D001343 ORTHO05D002008 2.4e-30 135.2 81 75.3
Peaxi162Scf01051g00136 Petunia axillaris HOM05D001343 ORTHO05D002008 4.0e-30 134.4 81 74.1
Duzib187G1854 Durio zibethinus HOM05D001343 ORTHO05D002008 6.9e-30 133.7 81 75.3
arahy.Tifrunner.gnm1.ann1.RFZ0FJ Arachis hypogaea HOM05D001343 ORTHO05D002008 9.0e-30 133.3 81 76.5
arahy.Tifrunner.gnm1.ann1.XQV0C2 Arachis hypogaea HOM05D001343 ORTHO05D002008 9.0e-30 133.3 81 76.5
CAN.G1238.2 Capsicum annuum HOM05D001343 ORTHO05D002008 9.0e-30 133.3 80 73.8
Cfa007070 Carpinus fangiana HOM05D001343 ORTHO05D002008 1.2e-29 132.9 81 71.6
Migut.L00728 Erythranthe guttata HOM05D001343 ORTHO05D002008 1.2e-29 132.9 79 78.5
Psat2g149280 Pisum sativum HOM05D001343 ORTHO05D002008 1.2e-29 132.9 81 72.8
Manes.02G113400 Manihot esculenta HOM05D001343 ORTHO05D002008 2.0e-29 132.1 81 72.8
Gohir.A02G177400 Gossypium hirsutum HOM05D001343 ORTHO05D002008 2.6e-29 131.7 81 75.3
Gorai.003G002700 Gossypium raimondii HOM05D001343 ORTHO05D002008 2.6e-29 131.7 81 75.3
Lsat_1_v5_gn_2_73481 Lactuca sativa HOM05D001343 ORTHO05D002008 3.4e-29 131.3 81 69.1
Gohir.D03G002500 Gossypium hirsutum HOM05D001343 ORTHO05D002008 5.8e-29 130.6 81 75.3
Nn5g30965 Nelumbo nucifera HOM05D001343 ORTHO05D002008 5.8e-29 130.6 81 71.6
Prupe.7G181200 Prunus persica HOM05D001343 ORTHO05D002008 5.8e-29 130.6 81 74.1
TWI73G0978 Tripterygium wilfordii HOM05D001343 ORTHO05D002008 5.8e-29 130.6 81 72.8
MD02G1118500 Malus domestica HOM05D001343 ORTHO05D002008 7.6e-29 130.2 81 72.8
MD15G1232800 Malus domestica HOM05D001343 ORTHO05D002008 7.6e-29 130.2 81 74.1
Sed0003910 Sechium edule HOM05D001343 ORTHO05D002008 7.6e-29 130.2 81 74.1
Haze_03668 Corylus avellana HOM05D001343 ORTHO05D002008 1.3e-28 129.4 81 70.4
Atru.chr3.982 Acer truncatum HOM05D001343 ORTHO05D002008 1.7e-28 129.0 81 69.1
Actinidia17373 Actinidia chinensis HOM05D001343 ORTHO05D002008 2.2e-28 128.6 74 78.4
Phvul.003G269400 Phaseolus vulgaris HOM05D001343 ORTHO05D002008 2.9e-28 128.3 84 70.2
unitig_46.g18716 Utricularia gibba HOM05D001343 ORTHO05D002008 3.8e-28 127.9 84 69.0
CiPaw.08G180900 Carya illinoinensis HOM05D001343 ORTHO05D002008 4.9e-28 127.5 81 70.4
Gohir.D10G088900 Gossypium hirsutum HOM05D001343 ORTHO05D002008 4.9e-28 127.5 79 78.5
Gorai.011G097800 Gossypium raimondii HOM05D001343 ORTHO05D002008 4.9e-28 127.5 79 78.5
PGR119G2034 Punica granatum HOM05D001343 ORTHO05D002008 4.9e-28 127.5 81 67.9
SalBow5G3849 Salvia bowleyana HOM05D001343 ORTHO05D002008 4.9e-28 127.5 80 71.2
Ciclev10025215m.g Citrus clementina HOM05D001343 ORTHO05D002008 6.4e-28 127.1 81 67.9
Potri.005G100500 Populus trichocarpa HOM05D001343 ORTHO05D002008 8.4e-28 126.7 81 65.4
Sabra05G0083100 Salix brachista HOM05D001343 ORTHO05D002008 8.4e-28 126.7 81 65.4
DCAR_010124 Daucus carota HOM05D001343 ORTHO05D002008 1.9e-27 125.6 78 71.8
Gohir.A10G099200 Gossypium hirsutum HOM05D001343 ORTHO05D002008 5.5e-27 124.0 79 77.2
Lalb_Chr09g0334321 Lupinus albus HOM05D001343 ORTHO05D002008 5.5e-27 124.0 81 71.6
Cpa.g.sc6.341 Carica papaya HOM05D001343 ORTHO05D002008 7.1e-27 123.6 81 70.4
MSTRG.3624 Avicennia marina HOM05D001343 ORTHO05D002008 9.3e-27 123.2 81 70.4
GSVIVG01026652001 Vitis vinifera HOM05D001343 ORTHO05D002008 9.3e-27 123.2 81 69.1
FAN23G2867 Fragaria x ananassa HOM05D001343 ORTHO05D002008 1.6e-26 122.5 80 68.8
FAN26G0498 Fragaria x ananassa HOM05D001343 ORTHO05D002008 1.6e-26 122.5 80 68.8
Sc07g0001350 Simmondsia chinensis HOM05D001343 ORTHO05D002008 2.7e-26 121.7 79 65.8
FvH4_1g10490 Fragaria vesca HOM05D001343 ORTHO05D002008 4.6e-26 120.9 80 67.5
FAN19G0245 Fragaria x ananassa HOM05D001343 ORTHO05D002008 4.6e-26 120.9 80 67.5
FAN28G1835 Fragaria x ananassa HOM05D001343 ORTHO05D002008 7.9e-26 120.2 80 67.5
Aqoxy6G01681 Aquilegia oxysepala HOM05D001343 ORTHO05D002008 1.3e-25 119.4 81 64.2
Lsat_1_v5_gn_3_68101 Lactuca sativa HOM05D001343 ORTHO05D002008 1.8e-25 119.0 84 66.7
RcHm_v2.0_Chr2g0097371 Rosa chinensis HOM05D001343 ORTHO05D002008 1.8e-25 119.0 81 67.9
HanXRQChr15g0489761 Helianthus annuus HOM05D001343 ORTHO05D002008 3.0e-25 118.2 79 68.4
Hund19704 Selenicereus undatus HOM05D001343 ORTHO05D002008 3.0e-25 118.2 79 63.3
VMungo0251G1376 Vigna mungo HOM05D001343 ORTHO05D002008 3.0e-25 118.2 85 68.2
arahy.Tifrunner.gnm1.ann1.D09L8P Arachis hypogaea HOM05D001343 ORTHO05D002008 3.9e-25 117.9 82 67.1
arahy.Tifrunner.gnm1.ann1.Z935MC Arachis hypogaea HOM05D001343 ORTHO05D002008 3.9e-25 117.9 82 67.1
Migut.H02204 Erythranthe guttata HOM05D001343 ORTHO05D002008 3.9e-25 117.9 84 65.5
Eucgr.I02229 Eucalyptus grandis HOM05D001343 ORTHO05D002008 5.1e-25 117.5 81 64.2
AL5G31900 Arabidopsis lyrata HOM05D001343 ORTHO05D002008 8.7e-25 116.7 84 64.3
PSO675G7328 Papaver somniferum HOM05D001343 ORTHO05D002008 8.7e-25 116.7 81 63.0
PSO541G0001 Papaver somniferum HOM05D001343 ORTHO05D002008 1.1e-24 116.3 77 66.2
Thhalv10010223m.g Eutrema salsugineum HOM05D001343 ORTHO05D002008 1.5e-24 115.9 84 64.3
AT3G51460 Arabidopsis thaliana HOM05D001343 ORTHO05D002008 1.9e-24 115.5 84 63.1
QL06p052840 Quercus lobata HOM05D001343 ORTHO05D002008 1.9e-24 115.5 81 65.4
QL06p053730 Quercus lobata HOM05D001343 ORTHO05D002008 1.9e-24 115.5 81 65.4
Sp2g30670 Schrenkiella parvula HOM05D001343 ORTHO05D002008 1.9e-24 115.5 81 64.2
THA.LOC104821353 Tarenaya hassleriana HOM05D001343 ORTHO05D002008 1.9e-24 115.5 76 67.1
HanXRQChr16g0531841 Helianthus annuus HOM05D001343 ORTHO05D002008 3.3e-24 114.8 81 61.7
Sp5g10780 Schrenkiella parvula HOM05D001343 ORTHO05D002008 3.3e-24 114.8 84 64.3
Carub.0005s1784 Capsella rubella HOM05D001343 ORTHO05D002008 4.3e-24 114.4 84 63.1
AL8G45600 Arabidopsis lyrata HOM05D001343 ORTHO05D002008 5.6e-24 114.0 76 69.7
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 5.6e-24 114.0 81 64.2
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 5.6e-24 114.0 81 64.2
CARHR161040 Cardamine hirsuta HOM05D001343 ORTHO05D002008 5.6e-24 114.0 84 63.1
CANSAT25G0770 Cannabis sativa HOM05D001343 ORTHO05D002008 7.4e-24 113.6 81 60.5
AT5G66020 Arabidopsis thaliana HOM05D001343 ORTHO05D002008 9.6e-24 113.2 76 68.4
MBI12_g36337_MAGBIO Magnolia biondii HOM05D001343 ORTHO05D002008 9.6e-24 113.2 78 62.8
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.6e-23 112.5 79 64.6
Carub.0008s2849 Capsella rubella HOM05D001343 ORTHO05D002008 1.6e-23 112.5 76 68.4
CARHR281740 Cardamine hirsuta HOM05D001343 ORTHO05D002008 1.6e-23 112.5 76 68.4
ECA246G1836 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.6e-23 112.5 81 63.0
THA.LOC104819161 Tarenaya hassleriana HOM05D001343 ORTHO05D002008 2.1e-23 112.1 76 67.1
Lsat_1_v5_gn_8_112321 Lactuca sativa HOM05D001343 ORTHO05D002008 2.8e-23 111.7 79 62.0
A01p23440 Brassica napus HOM05D001343 ORTHO05D002008 4.8e-23 110.9 84 61.9
BraA01t02251Z Brassica rapa HOM05D001343 ORTHO05D002008 4.8e-23 110.9 84 61.9
BcaNung00384 Brassica carinata HOM05D001343 ORTHO05D002008 6.2e-23 110.5 84 61.9
SGA_v2.0_scaffold2G00957 Striga asiatica HOM05D001343 ORTHO05D002008 6.2e-23 110.5 82 62.2
Aa31LG1G25920 Aethionema arabicum HOM05D001343 ORTHO05D002008 1.1e-22 109.8 84 59.5
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.1e-22 109.8 76 65.8
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.1e-22 109.8 76 65.8
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.1e-22 109.8 76 65.8
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 3.1e-22 108.2 69 68.1
TAR628G0582 Trochodendron aralioides HOM05D001343 ORTHO05D002008 4.0e-22 107.8 70 67.1
ATR0661G546 Amborella trichopoda HOM05D001343 ORTHO05D002008 9.0e-22 106.7 81 58.0
ATR0686G064 Amborella trichopoda HOM05D001343 ORTHO05D002008 9.0e-22 106.7 81 58.0
BcaB01g00512 Brassica carinata HOM05D001343 ORTHO05D002008 9.0e-22 106.7 85 62.4
BcaNung05556 Brassica carinata HOM05D001343 ORTHO05D002008 9.0e-22 106.7 80 62.5
C08p26720 Brassica napus HOM05D001343 ORTHO05D002008 9.0e-22 106.7 80 62.5
BolC8t50285H Brassica oleracea HOM05D001343 ORTHO05D002008 9.0e-22 106.7 80 62.5
Nn1g09409 Nelumbo nucifera HOM05D001343 ORTHO05D002008 1.2e-21 106.3 81 59.3
A09p44620 Brassica napus HOM05D001343 ORTHO05D002008 3.4e-21 104.8 80 61.2
BraA09t39922Z Brassica rapa HOM05D001343 ORTHO05D002008 3.4e-21 104.8 80 61.2
C01p29070 Brassica napus HOM05D001343 ORTHO05D002008 2.2e-20 102.1 77 64.9
BolC1t02839H Brassica oleracea HOM05D001343 ORTHO05D002008 2.2e-20 102.1 77 64.9
ECA238G3197 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.9e-19 99.0 61 68.9
Os02g0554300 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D002008 1.8e-17 92.4 78 52.6
DCAR_014048 Daucus carota HOM05D001343 ORTHO05D002008 3.0e-17 91.7 78 56.4
SEGI_19241 Sequoiadendron giganteum HOM05D001343 ORTHO05D002008 5.1e-17 90.9 84 51.2
Peaxi162Scf00580g00310 Petunia axillaris HOM05D001343 ORTHO05D002008 6.7e-17 90.5 56 75.0
Zm00001eb243810 Zea mays HOM05D001343 ORTHO05D002008 6.7e-17 90.5 78 51.3
Hma1.2p1_0300F.1_g118110 Hydrangea macrophylla HOM05D001343 ORTHO05D002008 1.9e-16 89.0 48 85.4
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 2.5e-16 88.6 71 62.0
CAN.G328.14 Capsicum annuum HOM05D001343 ORTHO05D002008 2.8e-15 85.1 48 79.2
Nitab4.5_0002850g0090 Nicotiana tabacum HOM05D001343 ORTHO05D002008 2.8e-15 85.1 48 79.2
CSS0032440 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 6.3e-15 84.0 81 54.3
Zm00001eb181990 Zea mays HOM05D001343 ORTHO05D002008 6.3e-15 84.0 78 47.4
Os11g0309000 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D002008 1.1e-14 83.2 79 46.8
unitig_748.g7548 Utricularia gibba HOM05D001343 ORTHO05D002008 5.3e-14 80.9 64 53.1
Atru.chr9.68 Acer truncatum HOM05D001343 ORTHO05D037896 4.5e-13 77.8 65 52.3
AUR62037308 Chenopodium quinoa HOM05D001343 ORTHO05D002008 5.9e-13 77.4 48 70.8
AUR62002843 Chenopodium quinoa HOM05D001343 ORTHO05D002008 1.3e-12 76.3 48 68.8
EL10Ac4g07687 Beta vulgaris HOM05D001343 ORTHO05D002008 1.7e-12 75.9 46 69.6
Actinidia22905 Actinidia chinensis HOM05D001343 ORTHO05D037896 8.5e-12 73.6 53 66.0
Pp3c3_31010 Physcomitrium patens HOM05D001343 ORTHO05D002008 2.7e-10 68.6 79 41.8
SalBow3G4186 Salvia bowleyana HOM05D001343 ORTHO05D002008 2.7e-10 68.6 49 61.2
Pp3c4_950 Physcomitrium patens HOM05D001343 ORTHO05D002008 6.1e-10 67.4 77 41.6
AagrBONN_evm.TU.Sc2ySwM_228.3029 Anthoceros agrestis HOM05D001343 ORTHO05D002008 1.0e-09 66.6 73 38.4
A01p23240 Brassica napus HOM05D001343 ORTHO05D002008 3.9e-09 64.7 71 46.5
BraA01t02234Z Brassica rapa HOM05D001343 ORTHO05D002008 3.9e-09 64.7 71 46.5
BcaNung00367 Brassica carinata HOM05D001343 ORTHO05D002008 5.1e-09 64.3 73 46.6
SMO169G0043 Selaginella moellendorffii HOM05D001343 ORTHO05D002008 5.1e-09 64.3 81 40.7
Mapoly0029s0078 Marchantia polymorpha HOM05D001343 ORTHO05D002008 6.7e-09 63.9 76 39.5
SMO202G0015 Selaginella moellendorffii HOM05D001343 ORTHO05D002008 8.8e-09 63.5 81 40.7
BcaC09g50107 Brassica carinata HOM05D001343 ORTHO05D002008 1.5e-08 62.8 73 45.2
C01p28880 Brassica napus HOM05D001343 ORTHO05D002008 1.5e-08 62.8 73 45.2
BolC1t02820H Brassica oleracea HOM05D001343 ORTHO05D002008 1.5e-08 62.8 73 45.2
ATR0681G258 Amborella trichopoda HOM05D001343 ORTHO05D002008 4.3e-08 61.2 83 43.4
Nitab4.5_0006960g0020 Nicotiana tabacum HOM05D001343 ORTHO05D002008 4.3e-08 61.2 37 67.6
Pp3c8_5490 Physcomitrium patens HOM05D001343 ORTHO05D002008 4.3e-08 61.2 74 40.5
Nitab4.5_0000467g0020 Nicotiana tabacum HOM05D001343 ORTHO05D002008 1.3e-07 59.7 34 76.5
AL5G32290 Arabidopsis lyrata HOM05D001343 ORTHO05D002008 2.8e-07 58.5 73 42.5
Carub.0005s1818 Capsella rubella HOM05D001343 ORTHO05D002008 4.8e-07 57.8 84 40.5
AT3G51830 Arabidopsis thaliana HOM05D001343 ORTHO05D002008 6.3e-07 57.4 73 41.1
CARHR161460 Cardamine hirsuta HOM05D001343 ORTHO05D002008 6.3e-07 57.4 73 41.1
Sp5g10440 Schrenkiella parvula HOM05D001343 ORTHO05D002008 6.3e-07 57.4 73 41.1
Thhalv10010245m.g Eutrema salsugineum HOM05D001343 ORTHO05D002008 1.8e-06 55.8 73 41.1
Eucgr.K02976 Eucalyptus grandis HOM05D001343 ORTHO05D002008 2.4e-06 55.5 73 43.8
CANSAT35G1611 Cannabis sativa HOM05D001343 ORTHO05D002008 4.1e-06 54.7 73 45.2
Lsat_1_v5_gn_9_35180 Lactuca sativa HOM05D001343 ORTHO05D002008 4.1e-06 54.7 73 41.1
Nn2g10875 Nelumbo nucifera HOM05D001343 ORTHO05D002008 4.1e-06 54.7 83 41.0
CAN.G823.3 Capsicum annuum HOM05D001343 ORTHO05D002008 5.3e-06 54.3 79 49.4
DCAR_028860 Daucus carota HOM05D001343 ORTHO05D002008 6.9e-06 53.9 77 44.2
QL07p035143 Quercus lobata HOM05D001343 ORTHO05D002008 6.9e-06 53.9 73 41.1
Atru.chr8.2265 Acer truncatum HOM05D001170 ORTHO05D008741 9.1e-06 53.5 73 42.5
SMO146G0015 Selaginella moellendorffii HOM05D001343 ORTHO05D002008 9.1e-06 53.5 72 37.5
Sopen01g044160 Solanum pennellii HOM05D001343 ORTHO05D394329 9.1e-06 53.5 38 60.5


User provided reference genes

Program Settings