Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 0.0e+00 1203.0 613 100.0
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 1.0e-199 700.7 620 62.4
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 2.3e-199 699.5 619 61.9
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 4.9e-194 681.8 620 60.3
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 8.4e-194 681.0 620 60.3
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 2.4e-193 679.5 621 59.4
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 2.7e-192 676.0 619 60.6
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 2.8e-189 666.0 615 60.3
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 1.5e-187 660.2 626 58.6
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 4.9e-186 655.2 617 58.7
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 4.2e-185 652.1 611 57.6
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 9.3e-185 651.0 617 56.9
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 1.7e-183 646.7 594 57.4
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 8.7e-183 644.4 615 57.2
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 3.3e-182 642.5 617 57.5
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 9.6e-182 641.0 615 57.4
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 2.8e-181 639.4 614 56.2
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 1.2e-179 634.0 578 59.2
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 4.4e-179 632.1 617 57.5
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 1.1e-177 627.5 654 54.7
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 1.1e-177 627.5 627 55.7
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 3.5e-176 622.5 624 55.4
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 6.0e-176 621.7 522 60.3
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 3.9e-175 619.0 650 54.5
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 2.8e-173 612.8 680 52.1
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 1.4e-172 610.5 630 54.3
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 3.1e-172 609.4 633 53.1
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 5.3e-172 608.6 617 56.2
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 6.9e-172 608.2 626 55.6
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 3.4e-171 605.9 582 57.2
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 3.4e-171 605.9 620 54.7
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 2.2e-170 603.2 629 54.4
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 2.9e-170 602.8 624 53.5
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 2.9e-170 602.8 624 55.1
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 2.9e-170 602.8 618 53.2
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.2e-169 599.4 619 53.6
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 5.5e-169 598.6 623 54.1
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 5.5e-169 598.6 624 55.0
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.6e-168 597.0 637 52.1
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 2.1e-168 596.7 620 55.2
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 1.1e-166 590.9 543 57.3
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 3.3e-166 589.3 517 59.8
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 8.1e-165 584.7 625 53.0
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 1.8e-164 583.6 618 52.9
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 3.1e-164 582.8 605 54.7
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 6.9e-164 581.6 612 53.3
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 1.5e-163 580.5 570 54.4
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 1.7e-162 577.0 593 54.3
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 2.2e-162 576.6 634 49.8
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 3.8e-162 575.9 614 51.8
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 2.5e-161 573.2 586 54.3
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 4.2e-161 572.4 572 53.7
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 1.2e-160 570.9 553 56.2
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 1.8e-159 567.0 621 50.9
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 1.1e-158 564.3 642 51.6
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 1.1e-158 564.3 623 52.6
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 5.7e-158 562.0 573 53.2
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 5.7e-158 562.0 548 55.3
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 7.4e-158 561.6 622 51.0
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 2.1e-157 560.1 559 54.2
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 2.1e-157 560.1 602 53.5
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 4.8e-157 558.9 610 52.5
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 1.1e-156 557.8 587 53.7
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 1.4e-156 557.4 631 50.6
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 1.4e-156 557.4 539 54.5
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 1.1e-153 547.7 549 54.1
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 5.5e-153 545.4 516 56.2
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 2.7e-152 543.1 609 50.7
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 1.9e-150 537.0 598 51.0
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 2.5e-150 536.6 618 49.2
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 2.5e-150 536.6 622 48.7
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 3.7e-149 532.7 603 49.6
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 1.1e-148 531.2 575 51.0
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 6.9e-148 528.5 665 47.5
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 2.6e-147 526.6 609 48.9
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 7.7e-147 525.0 553 51.0
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 7.7e-147 525.0 655 49.5
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 3.8e-146 522.7 491 58.2
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 8.5e-146 521.5 622 50.2
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 1.1e-145 521.2 564 50.2
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 7.2e-145 518.5 624 47.4
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 3.6e-144 516.2 546 52.4
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 1.4e-143 514.2 572 50.7
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 2.5e-142 510.0 605 48.6
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 1.7e-141 507.3 554 52.3
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.4e-140 503.4 418 61.2
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 6.9e-140 501.9 614 46.4
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 6.9e-140 501.9 576 49.0
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 6.9e-140 501.9 576 49.0
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 1.7e-138 497.3 514 52.1
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 2.2e-138 496.9 606 47.9
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 2.5e-137 493.4 571 50.8
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 1.4e-132 477.6 568 48.1
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 3.6e-128 463.0 604 45.2
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 4.8e-125 452.6 639 44.1
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 9.8e-118 428.3 525 45.9
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 1.1e-116 424.9 408 52.9
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 2.3e-87 327.4 459 44.0
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 3.1e-87 327.0 523 39.4
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 1.3e-85 321.6 467 39.0
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 2.4e-84 317.4 534 36.9
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 1.9e-81 307.8 632 35.4
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 4.2e-68 263.5 301 51.8
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 3.4e-54 217.2 196 59.7
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 2.9e-53 214.2 319 38.6
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.0e-50 204.1 208 51.4
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 4.5e-38 163.7 580 27.2
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 6.5e-29 133.3 449 29.0
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 2.5e-28 131.3 123 56.9
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.5e-25 122.1 569 25.7
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 4.4e-25 120.6 369 29.5
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 2.0e-17 95.1 68 63.2
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 3.5e-14 84.3 90 52.2
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 3.5e-14 84.3 90 52.2
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 4.5e-14 84.0 90 52.2
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 4.5e-14 84.0 90 52.2
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.7e-13 82.0 192 33.3
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 1.5e-09 68.9 203 30.5
Pp3c22_21030 Physcomitrium patens HOM05D004977 ORTHO05D006454 1.6e-06 58.9 323 22.6


User provided reference genes

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