Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 9.0e-207 723.4 377 100.0
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 1.0e-133 480.7 376 65.4
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 1.1e-132 477.2 376 65.4
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 3.3e-132 475.7 376 65.4
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 4.3e-132 475.3 376 65.4
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 1.2e-131 473.8 376 65.2
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 1.2e-131 473.8 376 65.7
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 2.8e-131 472.6 376 66.2
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 2.8e-131 472.6 376 65.7
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 3.6e-131 472.2 376 64.9
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 1.1e-130 470.7 376 64.1
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 4.0e-130 468.8 376 64.9
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 4.4e-129 465.3 377 65.0
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 4.9e-128 461.8 376 63.8
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 4.1e-127 458.8 375 62.9
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 2.7e-126 456.1 383 62.9
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 2.3e-125 453.0 377 63.7
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 4.7e-123 445.3 376 60.9
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 8.1e-123 444.5 377 62.3
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 1.1e-122 444.1 376 60.6
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 2.4e-122 443.0 376 60.9
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 5.2e-122 441.8 379 60.2
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 2.6e-121 439.5 376 60.1
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 7.6e-121 438.0 376 61.4
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 2.9e-120 436.0 376 60.9
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 2.7e-118 429.5 377 61.0
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 3.5e-118 429.1 383 59.8
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 7.8e-118 427.9 376 60.9
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 1.5e-116 423.7 376 60.1
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 9.6e-116 421.0 382 60.2
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 3.6e-115 419.1 377 58.4
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 6.2e-115 418.3 378 59.3
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 1.4e-114 417.2 397 59.4
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.8e-114 416.8 377 58.1
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.4e-114 416.4 377 58.4
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 3.1e-114 416.0 376 58.2
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 6.9e-114 414.8 376 62.2
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 7.6e-113 411.4 377 59.4
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 9.9e-113 411.0 377 58.1
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 1.7e-112 410.2 377 59.4
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 4.9e-112 408.7 378 59.8
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 8.4e-112 407.9 381 58.0
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 2.4e-111 406.4 376 57.4
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 2.4e-111 406.4 376 58.8
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 4.2e-111 405.6 376 60.1
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 1.2e-110 404.1 376 56.9
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 1.0e-109 401.0 376 58.8
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 3.0e-109 399.4 377 59.2
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 3.0e-109 399.4 376 56.6
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 1.1e-108 397.5 381 57.0
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 1.5e-108 397.1 377 57.8
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 5.6e-108 395.2 378 55.8
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 1.6e-107 393.7 378 55.6
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 4.8e-107 392.1 377 56.2
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 1.1e-106 391.0 376 59.6
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 3.1e-106 389.4 377 57.8
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 9.0e-106 387.9 380 57.1
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 1.5e-105 387.1 376 57.2
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 2.0e-105 386.7 380 55.8
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 1.4e-103 380.6 376 57.7
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 1.6e-102 377.1 380 57.4
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 1.6e-102 377.1 378 56.1
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 4.6e-102 375.6 380 53.4
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 1.3e-101 374.0 376 56.6
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 3.0e-101 372.9 332 57.8
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 9.6e-100 367.9 376 54.3
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 1.3e-99 367.5 398 53.8
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 8.1e-99 364.8 336 56.2
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 1.1e-98 364.4 380 53.2
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 3.1e-98 362.8 380 53.7
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 3.1e-98 362.8 380 53.7
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 4.0e-98 362.5 389 50.9
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 1.3e-96 357.5 380 52.4
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 1.4e-95 354.0 376 54.3
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 2.5e-95 353.2 380 52.1
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 4.2e-95 352.4 380 52.1
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 2.1e-94 350.1 384 51.0
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 4.6e-94 349.0 380 51.1
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 7.9e-94 348.2 379 52.0
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 7.9e-94 348.2 384 50.5
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 1.3e-93 347.4 380 51.1
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 3.0e-93 346.3 376 51.1
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 1.1e-92 344.4 340 54.1
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 5.7e-92 342.0 384 50.5
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 9.6e-92 341.3 384 50.8
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 4.8e-91 339.0 404 48.3
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 1.4e-90 337.4 376 52.9
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 6.9e-90 335.1 381 50.4
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 1.4e-87 327.4 384 49.5
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 1.9e-87 327.0 387 48.6
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 9.0e-82 308.1 380 47.9
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 1.8e-77 293.9 256 57.4
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 2.6e-76 290.0 284 56.3
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 1.2e-70 271.2 317 51.7
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 6.1e-70 268.9 225 64.9
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 8.8e-69 265.0 390 42.3
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 1.3e-67 261.2 256 53.9
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.7e-64 250.8 198 62.6
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 1.5e-63 247.7 388 39.9
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 1.6e-57 227.6 381 38.6
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 5.5e-55 219.2 168 68.5
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 2.0e-52 210.7 233 49.8
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 5.7e-52 209.1 169 68.6
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 7.5e-52 208.8 170 62.4
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 3.8e-48 196.4 378 36.2
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 2.8e-46 190.3 379 36.1
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 1.2e-44 184.9 180 55.6
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.4e-37 161.4 165 51.5
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 1.2e-36 158.3 271 36.9
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 1.3e-27 128.3 160 48.1
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 6.4e-27 125.9 161 46.6
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 1.1e-26 125.2 158 44.3
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.9e-26 124.4 189 38.6
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.4e-26 122.9 189 38.6
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 2.5e-23 114.0 168 44.0
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 2.6e-20 104.0 144 46.5
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 2.2e-19 100.9 164 32.9
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 1.6e-14 84.7 70 58.6
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 3.4e-12 77.0 82 48.8
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 9.9e-12 75.5 99 40.4
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.3e-11 75.1 92 43.5
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 3.8e-11 73.6 87 49.4
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 1.0e-08 65.5 439 23.0
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.2e-06 58.5 68 44.1


User provided reference genes

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