Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 1.0e-221 773.1 389 100.0
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.3e-123 447.2 394 62.2
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 1.7e-123 446.8 360 67.2
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 2.2e-123 446.4 394 62.2
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 3.0e-120 436.0 390 60.3
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 8.6e-120 434.5 296 75.7
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 2.5e-119 433.0 385 62.1
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 4.3e-119 432.2 395 63.8
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 6.2e-118 428.3 361 63.4
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 6.2e-118 428.3 380 62.9
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 2.4e-117 426.4 398 60.6
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 3.1e-117 426.0 397 61.0
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 3.4e-116 422.5 392 61.0
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 4.4e-116 422.2 389 62.0
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 4.4e-116 422.2 390 62.6
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 7.6e-116 421.4 323 68.1
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 9.9e-116 421.0 392 60.5
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 2.2e-115 419.9 397 58.7
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 2.2e-115 419.9 375 61.6
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 3.8e-115 419.1 397 59.7
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 3.8e-115 419.1 357 63.9
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 1.9e-114 416.8 288 74.7
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 3.2e-114 416.0 398 60.3
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 4.2e-114 415.6 288 73.3
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 7.1e-114 414.8 359 63.5
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 9.3e-114 414.5 390 59.0
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 9.3e-114 414.5 381 60.9
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 9.3e-114 414.5 288 73.3
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 9.3e-114 414.5 291 72.9
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.6e-113 413.7 305 69.8
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 1.6e-113 413.7 392 60.2
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 1.6e-113 413.7 280 74.3
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 2.1e-113 413.3 288 74.3
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 2.7e-113 412.9 291 71.8
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 3.5e-113 412.5 298 70.8
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 4.6e-113 412.1 250 79.2
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 6.0e-113 411.8 395 59.5
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 6.0e-113 411.8 295 71.5
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 3.9e-112 409.1 292 69.9
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 6.6e-112 408.3 381 58.8
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 8.7e-112 407.9 267 75.3
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 4.3e-111 405.6 381 61.4
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 5.6e-111 405.2 402 60.2
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 5.6e-111 405.2 283 73.1
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 7.3e-111 404.8 308 68.8
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 1.3e-110 404.1 295 70.5
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 3.6e-110 402.5 346 63.3
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 8.1e-110 401.4 287 71.8
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 1.1e-109 401.0 284 70.4
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.1e-109 399.4 295 69.8
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 2.6e-108 396.4 257 76.3
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 2.6e-108 396.4 394 58.1
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 5.8e-108 395.2 262 74.8
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 5.8e-108 395.2 291 69.1
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 9.9e-108 394.4 306 67.0
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 1.4e-106 390.6 261 74.3
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 4.2e-106 389.0 397 57.9
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 7.1e-106 388.3 388 54.4
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 7.1e-106 388.3 277 70.8
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 2.7e-105 386.3 286 68.2
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 2.7e-105 386.3 332 61.1
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 1.0e-104 384.4 286 67.8
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 1.0e-104 384.4 319 65.2
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 1.3e-104 384.0 320 63.4
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 1.3e-104 384.0 290 67.9
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 1.7e-104 383.6 285 68.1
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.7e-104 383.6 295 66.8
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 3.0e-104 382.9 262 72.1
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 6.6e-104 381.7 280 67.5
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 6.6e-104 381.7 277 67.5
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.9e-103 380.2 288 67.0
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 5.6e-103 378.6 267 69.7
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.3e-102 377.5 404 52.7
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 4.8e-102 375.6 310 62.9
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 6.2e-102 375.2 314 62.1
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 1.1e-101 374.4 301 64.1
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.1e-101 374.4 372 57.5
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 4.0e-101 372.5 315 61.6
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 5.3e-101 372.1 315 61.9
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 1.2e-100 370.9 318 60.7
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 7.6e-100 368.2 261 69.7
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 9.9e-100 367.9 286 65.0
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 2.2e-99 366.7 310 62.3
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 1.1e-98 364.4 314 60.5
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 3.2e-98 362.8 281 65.8
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.3e-95 352.4 284 63.4
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 8.1e-94 348.2 201 82.6
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 1.0e-88 331.3 300 57.7
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 4.5e-84 315.8 383 52.5
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 5.7e-79 298.9 245 62.4
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 1.1e-77 294.7 225 62.7
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 2.0e-76 290.4 313 48.9
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 3.8e-75 286.2 245 57.1
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.6e-73 280.8 237 52.7
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 7.9e-73 278.5 290 60.3
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 3.0e-72 276.6 290 60.0
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 9.7e-71 271.6 397 47.1
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 2.2e-70 270.4 209 66.0
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 1.8e-69 267.3 287 57.5
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.0e-67 261.5 280 53.6
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 2.3e-64 250.4 198 63.6
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 3.0e-64 250.0 243 48.6
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 8.8e-64 248.4 238 49.2
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.5e-55 221.1 185 60.0
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 5.5e-50 202.6 114 80.7
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 2.7e-49 200.3 172 52.9
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 6.1e-49 199.1 185 58.9
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.3e-46 191.4 238 39.9
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 5.4e-45 186.0 241 43.2
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.0e-39 167.5 120 68.3
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 2.8e-38 163.7 221 40.7
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 1.4e-32 144.8 222 44.1
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 1.4e-29 134.8 234 41.5
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 2.3e-27 127.5 137 54.0
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 3.3e-26 123.6 147 50.3
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 3.6e-25 120.2 129 58.9
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 5.2e-24 116.3 106 60.4
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 2.4e-21 107.5 75 72.0
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 5.2e-16 89.7 218 31.2
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 2.9e-14 84.0 66 66.7
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 1.2e-09 68.6 35 80.0
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 6.2e-09 66.2 141 33.3
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 4.0e-08 63.5 142 30.3
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 4.0e-08 63.5 141 31.9
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 5.2e-08 63.2 197 28.4
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.6e-07 60.8 142 29.6
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 3.4e-07 60.5 196 28.1
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 4.4e-07 60.1 195 28.7
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 4.4e-07 60.1 141 32.6
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 5.8e-07 59.7 139 30.2
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 1.3e-06 58.5 145 30.3
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 2.2e-06 57.8 149 29.5
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 2.2e-06 57.8 194 28.4
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 2.9e-06 57.4 141 31.2
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 2.9e-06 57.4 190 26.3
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 2.9e-06 57.4 141 30.5
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 3.7e-06 57.0 141 29.8
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 4.9e-06 56.6 193 26.9
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 8.4e-06 55.8 141 31.2
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 8.4e-06 55.8 141 31.2


User provided reference genes

Program Settings