Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g03410 Coffea canephora HOM05D004506 ORTHO05D005894 1.2e-97 359.8 178 100.0
Cc10_g00450 Coffea canephora HOM05D004506 ORTHO05D005894 4.1e-93 344.7 178 96.6
Cc02_g04480 Coffea canephora HOM05D004506 ORTHO05D005894 1.9e-45 186.4 96 96.9
Rhsim03G0164500 Rhododendron simsii HOM05D004506 ORTHO05D005894 3.8e-38 162.2 94 83.0
vmacro06819 Vaccinium macrocarpon HOM05D004506 ORTHO05D005894 1.4e-37 160.2 92 83.7
Oeu042536.1 Olea europaea HOM05D004506 ORTHO05D005894 9.3e-37 157.5 94 83.0
Migut.F00501 Erythranthe guttata HOM05D004506 ORTHO05D005894 2.1e-36 156.4 94 80.9
Cpa.g.sc13.280 Carica papaya HOM05D004506 ORTHO05D005894 7.9e-36 154.5 93 78.5
Peaxi162Scf00304g01360 Petunia axillaris HOM05D004506 ORTHO05D005894 7.9e-36 154.5 93 80.6
GSVIVG01017497001 Vitis vinifera HOM05D004506 ORTHO05D005894 7.9e-36 154.5 92 81.5
Dinv16855 Davidia involucrata HOM05D004506 ORTHO05D005894 1.3e-35 153.7 90 82.2
Glyma.04G130900 Glycine max HOM05D004506 ORTHO05D005894 1.3e-35 153.7 93 78.5
Peaxi162Scf00271g00832 Petunia axillaris HOM05D004506 ORTHO05D005894 1.3e-35 153.7 93 79.6
Actinidia13592 Actinidia chinensis HOM05D004506 ORTHO05D005894 1.8e-35 153.3 92 79.3
PSO017G3180 Papaver somniferum HOM05D004506 ORTHO05D005894 1.8e-35 153.3 90 81.1
CSS0039072 Camellia sinensis var. sinensis HOM05D004506 ORTHO05D005894 2.3e-35 152.9 92 79.3
Glyma.06G316900 Glycine max HOM05D004506 ORTHO05D005894 2.3e-35 152.9 93 77.4
A10p31480 Brassica napus HOM05D004506 ORTHO05D005894 3.9e-35 152.1 93 76.3
BraA10t45194Z Brassica rapa HOM05D004506 ORTHO05D005894 3.9e-35 152.1 93 76.3
Eucgr.K00176 Eucalyptus grandis HOM05D004506 ORTHO05D005894 3.9e-35 152.1 93 76.3
Lalb_Chr15g0079621 Lupinus albus HOM05D004506 ORTHO05D005894 3.9e-35 152.1 93 77.4
SGA_v2.0_scaffold2G01228 Striga asiatica HOM05D004506 ORTHO05D005894 3.9e-35 152.1 94 78.7
MBI04_g09533_MAGBIO Magnolia biondii HOM05D004506 ORTHO05D005894 5.1e-35 151.8 90 82.2
MBI04_g34093_MAGBIO Magnolia biondii HOM05D004506 ORTHO05D005894 5.1e-35 151.8 90 82.2
Phvul.005G010500 Phaseolus vulgaris HOM05D004506 ORTHO05D005894 5.1e-35 151.8 93 76.3
CAN.G330.6 Capsicum annuum HOM05D004506 ORTHO05D005894 6.7e-35 151.4 93 78.5
Solyc06g034150.4 Solanum lycopersicum HOM05D004506 ORTHO05D005894 6.7e-35 151.4 93 78.5
Sopen06g010810 Solanum pennellii HOM05D004506 ORTHO05D005894 6.7e-35 151.4 93 78.5
PGSC0003DMG400021582 Solanum tuberosum HOM05D004506 ORTHO05D005894 6.7e-35 151.4 93 78.5
BcaC06g32172 Brassica carinata HOM05D004506 ORTHO05D005894 1.5e-34 150.2 93 76.3
BolC9t59961H Brassica oleracea HOM05D004506 ORTHO05D005894 1.5e-34 150.2 93 76.3
Ca_14044_v3 Cicer arietinum L. HOM05D004506 ORTHO05D005894 1.5e-34 150.2 90 80.0
CiPaw.03G093800 Carya illinoinensis HOM05D004506 ORTHO05D005894 1.9e-34 149.8 92 78.3
Nitab4.5_0001358g0050 Nicotiana tabacum HOM05D004506 ORTHO05D005894 1.9e-34 149.8 93 76.3
Nitab4.5_0000262g0080 Nicotiana tabacum HOM05D004506 ORTHO05D005894 2.5e-34 149.4 90 78.9
Nitab4.5_0000448g0050 Nicotiana tabacum HOM05D004506 ORTHO05D005894 3.3e-34 149.1 93 76.3
Nitab4.5_0001267g0080 Nicotiana tabacum HOM05D004506 ORTHO05D005894 3.3e-34 149.1 93 76.3
PSO170G4268 Papaver somniferum HOM05D004506 ORTHO05D005894 3.3e-34 149.1 90 78.9
C09p72170 Brassica napus HOM05D004506 ORTHO05D005894 4.3e-34 148.7 93 75.3
CARHR208670 Cardamine hirsuta HOM05D004506 ORTHO05D005894 4.3e-34 148.7 93 75.3
Thhalv10013434m.g Eutrema salsugineum HOM05D004506 ORTHO05D005894 5.7e-34 148.3 93 76.3
Medtr3g008020 Medicago truncatula HOM05D004506 ORTHO05D005894 5.7e-34 148.3 90 77.8
TWI77G0110 Tripterygium wilfordii HOM05D004506 ORTHO05D005894 5.7e-34 148.3 94 74.5
Psat5g229120 Pisum sativum HOM05D004506 ORTHO05D005894 7.4e-34 147.9 90 77.8
Aqoxy7G00808 Aquilegia oxysepala HOM05D004506 ORTHO05D005894 9.7e-34 147.5 90 77.8
AT5G04620 Arabidopsis thaliana HOM05D004506 ORTHO05D005894 9.7e-34 147.5 93 74.2
Carub.0006s0354 Capsella rubella HOM05D004506 ORTHO05D005894 9.7e-34 147.5 93 74.2
DCAR_020180 Daucus carota HOM05D004506 ORTHO05D005894 9.7e-34 147.5 93 75.3
TPR.G12273 Trifolium pratense HOM05D004506 ORTHO05D005894 9.7e-34 147.5 90 78.9
TAR375G0145 Trochodendron aralioides HOM05D004506 ORTHO05D005894 9.7e-34 147.5 90 80.0
AL6G14250 Arabidopsis lyrata HOM05D004506 ORTHO05D005894 1.3e-33 147.1 93 73.1
Lj8A45T71 Lonicera japonica HOM05D004506 ORTHO05D005894 1.3e-33 147.1 93 76.3
Aa31LG11G5470 Aethionema arabicum HOM05D004506 ORTHO05D005894 2.2e-33 146.4 93 74.2
Thecc.03G151800 Theobroma cacao HOM05D004506 ORTHO05D005894 2.2e-33 146.4 93 73.1
Nn6g33875 Nelumbo nucifera HOM05D004506 ORTHO05D005894 2.8e-33 146.0 89 76.4
Potri.001G126700 Populus trichocarpa HOM05D004506 ORTHO05D005894 3.7e-33 145.6 90 75.6
Lj4g0017120 Lotus japonicus HOM05D004506 ORTHO05D005894 4.8e-33 145.2 90 76.7
Atru.chr1.848 Acer truncatum HOM05D004506 ORTHO05D005894 6.3e-33 144.8 89 77.5
Cfa008176 Carpinus fangiana HOM05D004506 ORTHO05D005894 6.3e-33 144.8 93 75.3
Sabra01G0097700 Salix brachista HOM05D004506 ORTHO05D005894 6.3e-33 144.8 93 73.1
MD15G1302100 Malus domestica HOM05D004506 ORTHO05D005894 8.2e-33 144.4 93 74.2
QL09p019790 Quercus lobata HOM05D004506 ORTHO05D005894 8.2e-33 144.4 93 73.1
arahy.Tifrunner.gnm1.ann1.95MHTD Arachis hypogaea HOM05D004506 ORTHO05D005894 1.1e-32 144.1 93 72.0
arahy.Tifrunner.gnm1.ann1.IFX0ZR Arachis hypogaea HOM05D004506 ORTHO05D005894 1.1e-32 144.1 93 72.0
Os10g0560900 Oryza sativa ssp. japonica HOM05D004506 ORTHO05D005894 1.1e-32 144.1 95 69.5
Manes.06G102500 Manihot esculenta HOM05D004506 ORTHO05D005894 1.4e-32 143.7 93 74.2
Prupe.2G274800 Prunus persica HOM05D004506 ORTHO05D005894 1.4e-32 143.7 93 74.2
QL09p019805 Quercus lobata HOM05D004506 ORTHO05D005894 1.4e-32 143.7 93 73.1
Ciclev10004861m.g Citrus clementina HOM05D004506 ORTHO05D005894 1.8e-32 143.3 89 77.5
Lj3g0001820 Lotus japonicus HOM05D004506 ORTHO05D005894 1.8e-32 143.3 90 75.6
Psat4g224080 Pisum sativum HOM05D004506 ORTHO05D005894 1.8e-32 143.3 99 73.7
Prupe.5G016200 Prunus persica HOM05D004506 ORTHO05D005894 1.8e-32 143.3 93 74.2
Sed0002724 Sechium edule HOM05D004506 ORTHO05D005894 1.8e-32 143.3 90 74.4
RcHm_v2.0_Chr1g0348931 Rosa chinensis HOM05D004506 ORTHO05D005894 2.4e-32 142.9 93 74.2
Sp6g38160 Schrenkiella parvula HOM05D004506 ORTHO05D005894 2.4e-32 142.9 125 61.6
FvH4_7g11000 Fragaria vesca HOM05D004506 ORTHO05D005894 3.1e-32 142.5 93 73.1
CsaV3_5G001240 Cucumis sativus L. HOM05D004506 ORTHO05D005894 4.1e-32 142.1 90 74.4
Duzib084G1159 Durio zibethinus HOM05D004506 ORTHO05D005894 5.3e-32 141.7 90 73.3
MELO3C005823.2 Cucumis melo HOM05D004506 ORTHO05D005894 6.9e-32 141.4 90 74.4
Gohir.A03G059500 Gossypium hirsutum HOM05D004506 ORTHO05D005894 6.9e-32 141.4 93 72.0
Gohir.D03G106400 Gossypium hirsutum HOM05D004506 ORTHO05D005894 6.9e-32 141.4 93 72.0
Gorai.003G112900 Gossypium raimondii HOM05D004506 ORTHO05D005894 6.9e-32 141.4 93 72.0
CANSAT56G3190 Cannabis sativa HOM05D004506 ORTHO05D005894 1.2e-31 140.6 89 75.3
ClCG01G001110 Citrullus lanatus HOM05D004506 ORTHO05D005894 1.2e-31 140.6 90 73.3
PGR042G2434 Punica granatum HOM05D004506 ORTHO05D005894 1.2e-31 140.6 90 72.2
SEGI_23386 Sequoiadendron giganteum HOM05D004506 ORTHO05D005894 1.2e-31 140.6 90 74.4
QL09p019769 Quercus lobata HOM05D004506 ORTHO05D005894 2.0e-31 139.8 93 72.0
Zm00001eb434390 Zea mays HOM05D004506 ORTHO05D005894 5.9e-31 138.3 90 73.3
HPP92_025562 Vanilla planifolia HOM05D004506 ORTHO05D005894 7.6e-31 137.9 93 67.7
ATR0057G043 Amborella trichopoda HOM05D004506 ORTHO05D005894 1.3e-30 137.1 94 68.1
COL.COLO4_14080 Corchorus olitorius HOM05D004506 ORTHO05D005894 1.3e-30 137.1 93 68.8
FAN10G0788 Fragaria x ananassa HOM05D004506 ORTHO05D005894 1.3e-30 137.1 99 68.7
CDE11G0103 Ceratophyllum demersum HOM05D004506 ORTHO05D005894 1.7e-30 136.7 90 71.1
Sc09g0010310 Simmondsia chinensis HOM05D004506 ORTHO05D005894 1.7e-30 136.7 90 72.2
Thecc.03G152000 Theobroma cacao HOM05D004506 ORTHO05D005894 1.7e-30 136.7 93 68.8
FAN10G1665 Fragaria x ananassa HOM05D004506 ORTHO05D005894 2.2e-30 136.3 99 68.7
FAN01G3128 Fragaria x ananassa HOM05D004506 ORTHO05D005894 2.9e-30 136.0 99 68.7
FAN03G0108 Fragaria x ananassa HOM05D004506 ORTHO05D005894 2.9e-30 136.0 99 68.7
FAN06G3057 Fragaria x ananassa HOM05D004506 ORTHO05D005894 2.9e-30 136.0 99 68.7
FAN06G3781 Fragaria x ananassa HOM05D004506 ORTHO05D005894 2.9e-30 136.0 99 68.7
Lj3g0005902 Lotus japonicus HOM05D004506 ORTHO05D005894 2.5e-29 132.9 90 71.1
AUR62012431 Chenopodium quinoa HOM05D004506 ORTHO05D005894 5.5e-29 131.7 89 70.8
Lj4g0011722 Lotus japonicus HOM05D004506 ORTHO05D005894 5.5e-29 131.7 90 70.0
Cpa.g.sc13.277 Carica papaya HOM05D004506 ORTHO05D005894 1.6e-28 130.2 92 67.4
Ah.16g104730 Amaranthus hybridus HOM05D004506 ORTHO05D005894 3.6e-28 129.0 89 68.5
EL10Ac2g04175 Beta vulgaris HOM05D004506 ORTHO05D005894 3.6e-28 129.0 89 68.5
COL.COLO4_14082 Corchorus olitorius HOM05D004506 ORTHO05D005894 3.6e-28 129.0 92 62.0
COL.COLO4_14084 Corchorus olitorius HOM05D004506 ORTHO05D005894 3.6e-28 129.0 91 65.9
AUR62031554 Chenopodium quinoa HOM05D004506 ORTHO05D005894 4.6e-28 128.6 89 71.9
ECA232G0243 Erigeron canadensis HOM05D004506 ORTHO05D005894 6.1e-28 128.3 93 69.9
Lsat_1_v5_gn_5_9361 Lactuca sativa HOM05D004506 ORTHO05D005894 7.9e-28 127.9 90 73.3
COL.COLO4_14083 Corchorus olitorius HOM05D004506 ORTHO05D005894 2.3e-27 126.3 90 64.4
HanXRQChr15g0485901 Helianthus annuus HOM05D004506 ORTHO05D005894 2.3e-27 126.3 91 71.4
Duzib205G1320 Durio zibethinus HOM05D004506 ORTHO05D005894 6.7e-27 124.8 92 60.9
COL.COLO4_15394 Corchorus olitorius HOM05D004506 ORTHO05D005894 1.9e-26 123.2 92 56.5
Mapoly0011s0111 Marchantia polymorpha HOM05D004506 ORTHO05D005894 8.2e-25 117.9 124 53.2
AagrBONN_evm.TU.Sc2ySwM_117.115 Anthoceros agrestis HOM05D004506 ORTHO05D005894 1.4e-24 117.1 94 62.8
Pp3c12_22290 Physcomitrium patens HOM05D004506 ORTHO05D005894 2.0e-23 113.2 92 56.5
SMO116G0299 Selaginella moellendorffii HOM05D004506 ORTHO05D005894 3.8e-22 109.0 92 58.7
Migut.F00496 Erythranthe guttata HOM05D004506 ORTHO05D005894 1.1e-21 107.5 94 62.8
MBI04_g34094_MAGBIO Magnolia biondii HOM05D004506 ORTHO05D005894 2.3e-19 99.8 90 58.9
Cre17.g733650 Chlamydomonas reinhardtii HOM05D004506 ORTHO05D005894 2.6e-18 96.3 92 55.4
Actinidia24985 Actinidia chinensis HOM05D004506 ORTHO05D005894 9.7e-18 94.4 92 55.4
Thecc.03G151900 Theobroma cacao HOM05D004506 ORTHO05D005894 1.7e-14 83.6 60 60.0
unitig_748.g7052 Utricularia gibba HOM05D004506 ORTHO05D005894 1.9e-13 80.1 54 72.2
MCO13G220 Micromonas commoda HOM05D004506 ORTHO05D005894 1.6e-12 77.0 92 45.7
Cfa008179 Carpinus fangiana HOM05D004506 ORTHO05D005894 1.1e-10 70.9 53 64.2
Gohir.D09G064600 Gossypium hirsutum HOM05D004506 ORTHO05D005894 6.3e-09 65.1 51 60.8
Gorai.009G362800 Gossypium raimondii HOM05D004506 ORTHO05D005894 6.3e-09 65.1 51 60.8
CBR_g51950 Chara braunii HOM05D004506 ORTHO05D005894 1.7e-06 57.0 37 75.7
Cfa008215 Carpinus fangiana HOM05D004506 ORTHO05D005894 2.2e-06 56.6 30 86.7


User provided reference genes

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