Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 1.7e-126 456.1 239 100.0
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 4.7e-52 208.8 240 52.1
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 5.1e-46 188.7 210 51.4
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.5e-45 187.2 235 48.5
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 9.6e-45 184.5 211 49.3
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.6e-44 183.7 220 49.1
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 4.7e-44 182.2 246 46.7
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 6.2e-44 181.8 233 47.6
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 1.1e-43 181.0 221 50.2
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 5.2e-43 178.7 255 46.3
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 1.2e-42 177.6 246 44.3
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 2.0e-42 176.8 239 47.3
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 9.9e-42 174.5 224 46.0
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 1.7e-41 173.7 216 47.2
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 1.7e-41 173.7 215 47.9
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 2.2e-41 173.3 213 48.8
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.9e-41 172.9 235 44.3
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 3.8e-41 172.6 230 47.8
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 3.8e-41 172.6 215 47.9
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.1e-40 171.0 216 46.8
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 2.4e-40 169.9 226 46.0
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 2.4e-40 169.9 242 46.3
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 9.3e-40 167.9 230 47.0
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 2.7e-39 166.4 212 49.1
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 7.8e-39 164.9 211 43.6
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 1.0e-38 164.5 223 46.6
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 3.0e-38 162.9 229 40.6
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 6.6e-38 161.8 222 45.9
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 1.1e-37 161.0 214 48.1
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 1.5e-37 160.6 235 47.7
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 1.9e-37 160.2 237 44.3
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 3.3e-37 159.5 207 45.9
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 3.3e-37 159.5 220 46.8
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 5.6e-37 158.7 214 47.7
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 1.6e-36 157.1 239 45.6
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 2.1e-36 156.8 241 44.0
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 1.1e-35 154.5 214 46.7
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 1.1e-35 154.5 245 44.5
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 1.1e-35 154.5 235 44.3
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 1.4e-35 154.1 217 47.0
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 1.8e-35 153.7 228 45.2
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 1.8e-35 153.7 228 44.7
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 1.8e-35 153.7 237 44.7
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 4.0e-35 152.5 233 45.5
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 5.3e-35 152.1 216 44.9
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 6.9e-35 151.8 230 44.3
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 1.5e-34 150.6 231 43.3
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 2.0e-34 150.2 222 41.9
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 2.0e-34 150.2 210 41.4
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 2.0e-34 150.2 207 45.9
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 2.0e-34 150.2 229 44.5
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 2.6e-34 149.8 232 44.8
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 3.4e-34 149.4 210 43.3
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 4.5e-34 149.1 228 43.9
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 4.5e-34 149.1 230 46.5
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 4.5e-34 149.1 234 43.6
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 5.8e-34 148.7 227 45.8
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 7.6e-34 148.3 209 43.5
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 9.9e-34 147.9 219 40.6
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 1.3e-33 147.5 237 42.6
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 1.7e-33 147.1 238 41.2
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 2.2e-33 146.7 244 42.6
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 2.9e-33 146.4 216 43.5
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 4.9e-33 145.6 218 45.0
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 8.4e-33 144.8 233 43.3
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 8.4e-33 144.8 232 44.8
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 1.4e-32 144.1 216 40.7
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 1.4e-32 144.1 216 44.0
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 2.4e-32 143.3 219 44.3
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 3.2e-32 142.9 219 43.4
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 7.1e-32 141.7 214 40.2
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 1.6e-31 140.6 228 41.7
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 1.6e-31 140.6 208 44.2
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 2.1e-31 140.2 229 38.9
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 2.1e-31 140.2 213 43.7
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 3.5e-31 139.4 212 42.0
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 3.5e-31 139.4 229 38.9
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 3.5e-31 139.4 216 44.9
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 3.5e-31 139.4 207 43.0
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 4.6e-31 139.0 207 44.4
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 4.6e-31 139.0 233 41.2
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 6.0e-31 138.7 215 39.5
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 1.0e-30 137.9 220 44.5
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.8e-30 137.1 215 42.3
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 3.9e-30 136.0 237 41.4
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 3.9e-30 136.0 215 41.9
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 5.1e-30 135.6 234 41.9
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 8.7e-30 134.8 229 41.0
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 1.1e-29 134.4 212 38.2
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 1.9e-29 133.7 236 41.9
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 5.6e-29 132.1 185 43.2
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 4.8e-28 129.0 230 40.9
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 1.1e-27 127.9 241 39.4
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 1.1e-27 127.9 196 37.8
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.1e-27 127.9 217 40.1
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 1.1e-27 127.9 164 48.8
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 1.8e-27 127.1 253 37.2
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 3.1e-27 126.3 214 38.8
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 3.1e-27 126.3 206 43.2
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 1.2e-26 124.4 203 41.9
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 3.4e-26 122.9 163 45.4
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.3e-25 120.9 171 40.4
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 1.7e-25 120.6 222 35.6
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 2.2e-25 120.2 237 36.7
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 4.9e-25 119.0 232 34.1
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 6.4e-25 118.6 176 47.2
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 2.1e-23 113.6 244 36.1
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 2.1e-23 113.6 243 35.8
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 5.1e-22 109.0 212 36.8
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 1.5e-21 107.5 210 32.9
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 1.3e-20 104.4 208 33.2
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 2.8e-20 103.2 245 33.1
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 3.7e-20 102.8 217 32.3
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 8.2e-20 101.7 247 34.4
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 8.2e-20 101.7 235 32.3
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 8.2e-20 101.7 209 30.6
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.8e-19 100.5 221 32.6
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 1.8e-19 100.5 208 32.7
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 2.4e-19 100.1 208 32.7
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 6.9e-19 98.6 129 46.5
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 9.0e-19 98.2 238 29.8
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 9.0e-19 98.2 195 32.3
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 1.2e-18 97.8 249 32.9
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 1.7e-17 94.0 246 31.7
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 3.8e-17 92.8 246 31.3
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 4.9e-17 92.4 238 31.5
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 8.4e-17 91.7 246 32.5
CDE02G4410 Ceratophyllum demersum HOM05D001668 ORTHO05D005522 1.4e-16 90.9 202 34.2
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 7.1e-16 88.6 230 32.6
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 9.3e-16 88.2 250 31.2
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 9.3e-16 88.2 239 32.6
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 9.3e-16 88.2 233 30.5
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 1.2e-15 87.8 241 31.5
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 1.6e-15 87.4 241 31.5
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 3.0e-14 83.2 248 31.5
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 1.1e-13 81.3 239 32.2
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 1.3e-12 77.8 235 29.4
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 2.2e-12 77.0 129 38.8
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 2.2e-12 77.0 248 29.8
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 4.8e-12 75.9 248 29.4
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 4.8e-12 75.9 104 41.3
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 5.3e-11 72.4 245 30.6
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 5.3e-11 72.4 245 30.6
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 9.0e-11 71.6 111 41.4
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 2.0e-10 70.5 96 45.8
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 3.4e-10 69.7 245 30.2
CSS0015165 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 7.7e-10 68.6 123 35.8
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 1.0e-09 68.2 108 37.0
Aa31LG8G6630 Aethionema arabicum HOM05D003097 ORTHO05D003437 1.1e-08 64.7 186 28.0
Pp3c11_20170 Physcomitrium patens HOM05D003097 ORTHO05D005522 1.9e-08 63.9 111 35.1
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 4.2e-08 62.8 94 37.2
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 4.2e-08 62.8 94 38.3
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 4.2e-08 62.8 118 34.7
SGA_v2.0_scaffold80G25871 Striga asiatica HOM05D003097 ORTHO05D003437 5.5e-08 62.4 113 37.2
TWI75G0491 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 1.2e-07 61.2 103 35.9
Dinv33630 Davidia involucrata HOM05D003097 ORTHO05D003437 2.7e-07 60.1 105 36.2
BcaNung03019 Brassica carinata HOM05D003097 ORTHO05D003437 3.6e-07 59.7 78 43.6
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 3.6e-07 59.7 113 35.4
Phvul.003G016700 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 4.6e-07 59.3 183 29.0
Thhalv10026039m.g Eutrema salsugineum HOM05D003097 ORTHO05D003437 1.0e-06 58.2 68 45.6
C02p18750 Brassica napus HOM05D003097 ORTHO05D003437 1.4e-06 57.8 75 45.3
Atru.chr5.3226 Acer truncatum HOM05D003097 ORTHO05D003437 1.8e-06 57.4 74 45.9
Sabra09G0099100 Salix brachista HOM05D003097 ORTHO05D003437 1.8e-06 57.4 187 27.8
Sp7g33840 Schrenkiella parvula HOM05D003097 ORTHO05D003437 1.8e-06 57.4 67 47.8
Gohir.A03G203100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 2.3e-06 57.0 63 46.0
Gohir.D02G224400 Gossypium hirsutum HOM05D003097 ORTHO05D003437 2.3e-06 57.0 63 46.0
BraA01t00253Z Brassica rapa HOM05D003097 ORTHO05D003437 5.1e-06 55.8 75 45.3
BraA03t15471Z Brassica rapa HOM05D003097 ORTHO05D003437 5.1e-06 55.8 105 34.3
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 6.7e-06 55.5 179 30.7
BcaNung00768 Brassica carinata HOM05D003097 ORTHO05D003437 6.7e-06 55.5 75 45.3
MD16G1216000 Malus domestica HOM05D001139 ORTHO05D000936 6.7e-06 55.5 163 31.3


User provided reference genes

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