Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.8e-110 402.5 193 100.0
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 3.3e-104 381.7 193 93.3
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 3.3e-104 381.7 187 96.8
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 7.3e-104 380.6 193 93.3
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 7.3e-104 380.6 190 93.7
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 1.6e-103 379.4 187 95.7
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.6e-103 379.4 187 95.2
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 2.8e-103 378.6 193 92.7
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 3.6e-103 378.3 189 94.2
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 6.2e-103 377.5 187 94.7
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.4e-102 376.3 194 92.8
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 1.8e-102 375.9 193 92.2
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.4e-102 375.6 193 91.2
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 2.4e-102 375.6 193 91.7
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 3.1e-102 375.2 193 92.2
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 3.1e-102 375.2 193 92.2
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 3.1e-102 375.2 193 91.2
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.0e-102 374.8 193 92.2
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 5.3e-102 374.4 193 91.7
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 5.3e-102 374.4 193 93.3
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 6.9e-102 374.0 194 92.3
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 6.9e-102 374.0 185 95.1
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 9.0e-102 373.6 190 92.6
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 9.0e-102 373.6 193 92.2
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-101 373.2 193 91.7
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-101 373.2 193 91.7
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 1.2e-101 373.2 193 92.7
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.2e-101 373.2 185 95.7
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.2e-101 373.2 193 91.7
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 189 92.1
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 1.5e-101 372.9 193 91.7
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.0e-101 372.5 190 93.7
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 2.6e-101 372.1 189 92.1
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 2.6e-101 372.1 190 92.1
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 2.6e-101 372.1 193 92.2
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 4.5e-101 371.3 193 91.2
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.5e-101 371.3 193 92.2
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.5e-101 371.3 189 91.0
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.5e-101 371.3 193 92.2
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 5.8e-101 370.9 189 93.7
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 7.6e-101 370.5 188 91.5
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 9.9e-101 370.2 193 91.2
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 9.9e-101 370.2 183 94.5
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 9.9e-101 370.2 183 94.5
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 9.9e-101 370.2 193 91.2
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 9.9e-101 370.2 193 90.7
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 9.9e-101 370.2 193 92.2
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.9e-101 370.2 193 92.2
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.9e-101 370.2 193 92.2
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.9e-101 370.2 193 92.2
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.9e-101 370.2 193 92.2
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 9.9e-101 370.2 193 90.7
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.3e-100 369.8 193 91.7
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.7e-100 369.4 185 94.1
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 1.7e-100 369.4 185 94.1
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.7e-100 369.4 189 90.5
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.7e-100 369.4 201 88.6
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.7e-100 369.4 189 92.6
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 2.2e-100 369.0 193 91.2
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.9e-100 368.6 188 91.5
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 3.8e-100 368.2 193 90.7
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 3.8e-100 368.2 187 92.5
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 3.8e-100 368.2 186 91.9
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 4.9e-100 367.9 193 89.1
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 4.9e-100 367.9 193 90.7
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 4.9e-100 367.9 193 91.7
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 6.4e-100 367.5 193 91.2
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 8.4e-100 367.1 189 91.0
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 8.4e-100 367.1 189 91.0
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 8.4e-100 367.1 189 91.0
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 8.4e-100 367.1 189 91.0
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 1.1e-99 366.7 188 91.5
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.1e-99 366.7 193 90.2
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 1.1e-99 366.7 186 91.4
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.4e-99 366.3 186 91.9
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.4e-99 366.3 186 91.9
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.4e-99 366.3 193 90.2
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 1.4e-99 366.3 188 89.9
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.4e-99 366.3 185 92.4
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 1.9e-99 365.9 183 91.3
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.9e-99 365.9 189 89.9
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 1.9e-99 365.9 189 91.0
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 1.9e-99 365.9 189 91.0
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.4e-99 365.5 183 92.3
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 2.4e-99 365.5 186 90.9
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 3.2e-99 365.2 193 90.7
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 3.2e-99 365.2 193 89.6
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 5.4e-99 364.4 188 89.9
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 5.4e-99 364.4 188 91.5
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 7.1e-99 364.0 193 89.6
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 7.1e-99 364.0 183 93.4
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 9.3e-99 363.6 193 89.1
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 9.3e-99 363.6 189 90.5
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 9.3e-99 363.6 189 90.5
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 9.3e-99 363.6 186 91.4
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 1.2e-98 363.2 189 90.5
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.2e-98 363.2 193 89.6
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.6e-98 362.8 209 84.2
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 2.1e-98 362.5 186 90.3
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.5e-98 361.7 193 88.6
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 3.5e-98 361.7 196 87.8
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 4.6e-98 361.3 185 91.9
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 7.9e-98 360.5 188 89.9
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 7.9e-98 360.5 188 89.4
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 7.9e-98 360.5 188 89.4
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 7.9e-98 360.5 188 89.4
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 7.9e-98 360.5 188 88.8
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 7.9e-98 360.5 189 87.8
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 7.9e-98 360.5 193 89.6
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.8e-97 359.4 188 89.4
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.8e-97 359.4 188 89.4
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 3.0e-97 358.6 188 89.4
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 3.9e-97 358.2 188 89.4
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 3.9e-97 358.2 188 89.4
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 3.9e-97 358.2 186 89.8
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 6.7e-97 357.5 188 89.4
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 6.7e-97 357.5 188 89.4
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 6.7e-97 357.5 188 89.4
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 6.7e-97 357.5 187 89.8
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 8.7e-97 357.1 188 88.8
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 8.7e-97 357.1 187 89.3
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.1e-96 356.7 188 88.3
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.5e-96 356.3 193 88.1
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 2.5e-96 355.5 188 87.2
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 5.6e-96 354.4 193 87.6
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 7.4e-96 354.0 185 89.2
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 6.2e-95 350.9 188 87.2
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 2.4e-94 349.0 189 86.8
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 4.0e-94 348.2 188 86.7
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 5.3e-94 347.8 188 86.7
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 9.0e-94 347.1 182 87.4
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.2e-93 346.7 188 87.2
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 3.4e-93 345.1 181 89.0
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 1.7e-92 342.8 191 82.2
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 2.2e-92 342.4 259 68.7
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 4.9e-92 341.3 182 87.4
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.5e-91 339.0 189 88.9
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 7.4e-88 327.4 187 79.1
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 7.4e-88 327.4 182 84.6
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 8.2e-87 323.9 191 80.1
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 2.6e-85 318.9 162 91.4
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-82 309.7 188 80.3
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 5.1e-81 304.7 152 91.4
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 7.2e-75 284.3 142 92.3
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 1.6e-74 283.1 143 93.0
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 3.9e-73 278.5 140 92.1
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.1e-72 276.9 141 92.2
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 4.8e-71 271.6 130 96.2
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.1e-67 260.4 188 72.9
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.5e-67 259.2 194 69.6
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 7.9e-66 254.2 151 81.5
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.8e-65 253.1 136 86.8
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.8e-65 253.1 128 87.5
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.0e-65 252.3 163 77.3
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 3.6e-58 228.8 188 54.3
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 1.0e-57 227.3 187 56.7
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 3.7e-55 218.8 166 69.3
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 9.7e-48 194.1 157 66.2
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-43 179.9 90 91.1
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.2e-43 179.1 90 87.8
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.1e-42 174.9 90 86.7
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.4e-40 168.7 87 85.1
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.5e-40 167.9 157 58.0
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.5e-40 167.9 103 74.8
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.7e-39 166.8 87 83.9
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 2.8e-39 166.0 87 83.9
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.1e-38 164.1 87 83.9
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.8e-38 163.3 87 82.8
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.8e-38 163.3 87 82.8
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 1.7e-36 156.8 103 78.6
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 8.6e-36 154.5 141 58.9
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.5e-35 151.8 87 80.5
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.4e-32 142.5 79 79.7
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 3.7e-31 139.0 69 82.6
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 8.3e-31 137.9 70 95.7
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.8e-26 122.9 62 85.5
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.8e-26 122.9 62 85.5
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.8e-26 122.9 62 85.5
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.8e-26 122.9 62 85.5
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.8e-26 122.9 62 85.5
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.8e-26 122.9 62 85.5
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 1.8e-17 93.6 52 92.3
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 1.9e-14 83.6 44 84.1
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 3.5e-13 79.3 44 84.1


User provided reference genes

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