Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 4.5e-248 860.9 465 100.0
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 2.3e-151 539.7 467 64.2
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 6.6e-151 538.1 465 63.2
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 1.4e-148 530.4 466 63.1
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.2e-147 527.3 472 62.9
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 3.4e-147 525.8 464 62.9
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 7.1e-145 518.1 470 62.1
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 8.4e-138 494.6 475 59.6
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 1.6e-136 490.3 440 63.0
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 3.5e-136 489.2 475 58.9
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 6.7e-135 485.0 479 57.6
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 1.5e-134 483.8 471 58.8
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 1.5e-134 483.8 469 58.2
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 9.6e-134 481.1 478 56.5
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 3.7e-133 479.2 465 57.4
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 3.7e-133 479.2 479 56.8
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 8.1e-133 478.0 493 56.8
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 8.1e-133 478.0 493 56.8
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.4e-132 476.5 472 57.0
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 3.1e-132 476.1 483 58.2
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 4.0e-132 475.7 473 57.3
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 5.3e-132 475.3 455 58.9
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 3.4e-131 472.6 477 56.6
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 3.4e-131 472.6 475 56.6
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 5.8e-131 471.9 472 55.9
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 1.3e-130 470.7 484 56.8
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 2.2e-130 469.9 477 57.7
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 1.6e-128 463.8 475 56.8
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 1.6e-128 463.8 485 56.7
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 7.9e-128 461.5 455 57.6
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 8.7e-127 458.0 488 55.9
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 2.5e-126 456.4 477 57.7
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 2.8e-125 453.0 474 55.5
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 4.8e-125 452.2 477 56.8
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 6.3e-125 451.8 475 56.6
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 3.1e-124 449.5 485 56.1
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 6.9e-124 448.4 478 55.6
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.2e-123 447.6 473 54.1
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 1.5e-123 447.2 395 62.3
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 3.4e-123 446.0 289 85.5
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 1.3e-122 444.1 473 53.7
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 3.8e-122 442.6 467 53.7
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.2e-121 439.5 479 52.8
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.2e-120 437.6 476 55.5
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.1e-120 436.8 479 53.9
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.5e-120 436.0 479 53.7
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 6.1e-120 435.3 471 53.1
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 7.9e-120 434.9 473 55.2
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 1.5e-118 430.6 476 53.2
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.5e-118 430.6 472 52.5
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.2e-117 426.8 481 53.0
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 4.8e-117 425.6 468 55.1
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 8.2e-117 424.9 465 52.9
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 1.1e-116 424.5 488 53.1
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 4.1e-116 422.5 480 54.0
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.9e-116 421.8 405 57.3
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 9.0e-116 421.4 430 57.0
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 1.5e-115 420.6 405 57.0
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 1.5e-115 420.6 469 52.7
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.7e-115 418.3 469 51.4
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.6e-112 409.5 475 50.3
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.0e-111 407.9 475 50.1
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 3.7e-109 399.4 480 49.6
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.2e-107 394.4 329 64.7
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.0e-107 393.7 329 64.1
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.0e-107 393.7 491 50.1
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.7e-106 390.6 483 50.7
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.9e-106 389.8 333 63.7
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 7.2e-105 385.2 479 48.6
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 1.6e-104 384.0 467 48.0
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 7.9e-104 381.7 488 51.2
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 1.0e-103 381.3 472 51.7
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 1.1e-102 377.9 468 50.6
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 6.3e-101 372.1 487 49.5
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 1.8e-100 370.5 474 48.1
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 5.3e-100 369.0 483 48.7
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 5.3e-100 369.0 471 49.9
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 1.3e-98 364.4 478 50.6
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 2.2e-98 363.6 465 46.7
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 1.5e-97 360.9 467 49.9
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.9e-97 360.5 478 49.8
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.2e-97 358.6 351 56.4
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.2e-96 357.8 472 48.3
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.6e-96 357.5 480 46.7
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.7e-96 356.7 472 47.5
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.0e-96 355.1 484 46.9
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.7e-95 352.1 435 50.8
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 7.5e-94 348.6 401 51.4
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 1.8e-92 344.0 487 44.4
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.8e-92 344.0 472 45.6
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 4.1e-92 342.8 308 59.4
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 4.1e-92 342.8 436 50.2
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 4.5e-91 339.3 483 44.9
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.9e-91 339.0 466 45.7
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 1.7e-90 337.4 496 44.4
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.2e-90 337.0 470 47.9
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 8.5e-90 335.1 483 44.9
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 2.5e-89 333.6 499 41.9
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 4.2e-89 332.8 495 43.4
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 3.6e-88 329.7 472 44.9
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 1.0e-87 328.2 495 42.6
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.0e-87 326.6 470 46.4
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 1.2e-86 324.7 481 44.5
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 1.2e-86 324.7 481 44.5
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 3.7e-85 319.7 467 46.0
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.7e-85 319.7 464 46.8
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 1.4e-84 317.8 464 46.8
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 1.4e-84 317.8 475 43.2
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 1.7e-82 310.8 493 41.6
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.2e-80 304.7 498 40.8
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.7e-80 303.5 483 45.1
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.6e-80 303.1 474 43.0
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.6e-80 303.1 474 43.0
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-79 300.8 293 57.0
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-78 297.7 470 45.5
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.4e-78 296.6 354 50.0
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 1.4e-76 291.2 281 57.3
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.5e-73 281.2 337 51.0
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 2.2e-69 267.3 340 47.9
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.2e-69 267.3 346 47.1
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.0e-68 262.3 469 39.2
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 1.3e-66 258.1 318 51.9
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 3.9e-66 256.5 276 52.2
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 7.3e-65 252.3 400 41.5
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.8e-64 250.4 471 39.3
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 7.5e-62 242.3 186 67.2
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 2.9e-61 240.4 256 54.7
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 7.0e-60 235.7 490 36.9
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-55 221.1 237 54.0
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 1.8e-55 221.1 461 35.1
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 9.9e-46 188.7 192 58.3
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.4e-44 184.1 191 55.5
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.1e-43 181.0 156 63.5
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.7e-40 169.9 174 56.3
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.1e-39 168.7 182 52.7
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 2.4e-39 167.5 455 33.0
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.6e-38 164.1 169 57.4
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.8e-35 152.5 235 41.7
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 5.6e-33 146.4 307 37.8
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.6e-33 146.4 104 71.2
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.3e-33 146.0 144 56.2
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 6.2e-32 142.9 149 47.0
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 4.2e-28 130.2 88 76.1
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 5.1e-26 123.2 118 53.4
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 3.3e-25 120.6 258 38.4
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.4e-23 115.2 72 81.9
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 4.0e-23 113.6 107 53.3
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 8.7e-18 95.9 74 64.9
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.5e-17 95.1 98 53.1
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.9e-13 80.9 117 40.2
Nitab4.5_0003490g0010 Nicotiana tabacum HOM05D002503 ORTHO05D002810 1.6e-08 65.1 416 25.2
Sc21g0004980 Simmondsia chinensis HOM05D002125 ORTHO05D002105 1.6e-08 65.1 195 29.7
Duzib084G1134 Durio zibethinus HOM05D002503 ORTHO05D002810 3.7e-08 63.9 400 28.5
Nitab4.5_0001267g0140 Nicotiana tabacum HOM05D002503 ORTHO05D002810 3.7e-08 63.9 424 25.5
CARHR264100 Cardamine hirsuta HOM05D002503 ORTHO05D002810 8.2e-08 62.8 404 27.2
CAN.G48.42 Capsicum annuum HOM05D002503 ORTHO05D002810 1.4e-07 62.0 424 25.2
Sopen03g024090 Solanum pennellii HOM05D002503 ORTHO05D002810 1.4e-07 62.0 424 24.5
Solyc03g093310.3 Solanum lycopersicum HOM05D002503 ORTHO05D002810 1.8e-07 61.6 424 24.5
Manes.01G269900 Manihot esculenta HOM05D002503 ORTHO05D002810 3.1e-07 60.8 423 26.2
Ah.15g090380 Amaranthus hybridus HOM05D002125 ORTHO05D002105 5.3e-07 60.1 308 25.6
AUR62028939 Chenopodium quinoa HOM05D003317 ORTHO05D003696 5.3e-07 60.1 280 26.4
Duzib138G0734 Durio zibethinus HOM05D002503 ORTHO05D002810 5.3e-07 60.1 398 25.4
ClCG02G019190 Citrullus lanatus HOM05D002125 ORTHO05D002105 6.9e-07 59.7 197 30.5
Ciclev10004858m.g Citrus clementina HOM05D002503 ORTHO05D002810 6.9e-07 59.7 416 26.4
Actinidia13582 Actinidia chinensis HOM05D002503 ORTHO05D002810 9.0e-07 59.3 418 24.4
Actinidia29062 Actinidia chinensis HOM05D002125 ORTHO05D002105 9.0e-07 59.3 315 23.5
PGSC0003DMG400014829 Solanum tuberosum HOM05D002503 ORTHO05D002810 9.0e-07 59.3 424 24.1
MELO3C025685.2 Cucumis melo HOM05D002125 ORTHO05D002105 1.2e-06 58.9 217 29.5
AUR62025246 Chenopodium quinoa HOM05D003317 ORTHO05D003696 1.5e-06 58.5 280 26.1
Os08g0459100 Oryza sativa ssp. japonica HOM05D003317 ORTHO05D003696 1.5e-06 58.5 179 25.1
CsaV3_4G004000 Cucumis sativus L. HOM05D002503 ORTHO05D002810 2.6e-06 57.8 415 23.9
RcHm_v2.0_Chr2g0157391 Rosa chinensis HOM05D002813 ORTHO05D003203 2.6e-06 57.8 249 26.1
GSVIVG01024623001 Vitis vinifera HOM05D002125 ORTHO05D002105 2.6e-06 57.8 241 27.0
VMungo0331G0655 Vigna mungo HOM05D001219 ORTHO05D001017 3.4e-06 57.4 284 25.4
Migut.B01580 Erythranthe guttata HOM05D002503 ORTHO05D002810 4.5e-06 57.0 202 26.2
Aa31LG5G90 Aethionema arabicum HOM05D002503 ORTHO05D002810 5.9e-06 56.6 379 25.3
COL.COLO4_12472 Corchorus olitorius HOM05D002503 ORTHO05D002810 5.9e-06 56.6 398 24.6
Nn2g11037 Nelumbo nucifera HOM05D002125 ORTHO05D002105 7.6e-06 56.2 303 24.4
Nitab4.5_0007441g0040 Nicotiana tabacum HOM05D004871 ORTHO05D005755 7.6e-06 56.2 40 62.5
Oeu017788.1 Olea europaea HOM05D002503 ORTHO05D002810 7.6e-06 56.2 451 23.3
Sopen00g008950 Solanum pennellii HOM05D003317 ORTHO05D003696 7.6e-06 56.2 253 24.1
Sopen07g021250 Solanum pennellii HOM05D003317 ORTHO05D003696 7.6e-06 56.2 253 24.1
Zm00001eb040360 Zea mays HOM05D003317 ORTHO05D003696 7.6e-06 56.2 172 26.7
MELO3C015517.2 Cucumis melo HOM05D003317 ORTHO05D003696 1.0e-05 55.8 142 31.0


User provided reference genes

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