Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 9.7e-76 286.6 130 100.0
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 1.8e-74 282.3 127 100.0
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 5.2e-29 131.3 108 53.7
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.3e-24 116.7 115 47.8
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 8.6e-24 114.0 132 44.7
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.3e-23 112.1 103 49.5
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 5.6e-23 111.3 87 55.2
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.8e-22 109.0 105 46.7
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 2.8e-22 109.0 103 51.5
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 3.6e-22 108.6 114 44.7
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 8.1e-22 107.5 114 44.7
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 1.1e-21 107.1 98 49.0
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 1.1e-21 107.1 106 46.2
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 1.4e-21 106.7 118 41.5
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.4e-21 106.7 105 45.7
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.8e-21 106.3 106 46.2
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.8e-21 106.3 105 45.7
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 4.0e-21 105.1 120 42.5
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 5.2e-21 104.8 114 47.4
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 6.8e-21 104.4 101 43.6
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 6.8e-21 104.4 95 49.5
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.5e-20 103.2 121 47.9
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 2.0e-20 102.8 99 46.5
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 5.8e-20 101.3 118 44.1
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 5.8e-20 101.3 105 43.8
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 7.6e-20 100.9 112 41.1
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 9.9e-20 100.5 107 43.9
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 2.2e-19 99.4 117 40.2
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 4.9e-19 98.2 111 46.8
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 6.4e-19 97.8 122 41.8
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 8.4e-19 97.4 104 44.2
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 8.4e-19 97.4 101 44.6
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 1.4e-18 96.7 104 43.3
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 1.4e-18 96.7 100 45.0
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 1.9e-18 96.3 110 40.9
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 2.4e-18 95.9 103 40.8
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 2.4e-18 95.9 103 40.8
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 2.4e-18 95.9 103 40.8
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 3.2e-18 95.5 103 40.8
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 3.2e-18 95.5 104 41.3
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 7.1e-18 94.4 78 50.0
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 9.2e-18 94.0 103 41.7
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 9.2e-18 94.0 111 45.9
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 9.2e-18 94.0 111 45.9
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 9.2e-18 94.0 111 45.9
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.2e-17 93.6 111 45.9
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 1.2e-17 93.6 101 40.6
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.1e-17 92.8 128 39.1
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 2.7e-17 92.4 111 45.0
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 2.7e-17 92.4 101 39.6
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 3.5e-17 92.0 97 45.4
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 4.6e-17 91.7 122 36.9
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.0e-16 90.5 111 39.6
DCAR_008617 Daucus carota HOM05D007742 ORTHO05D004072 1.0e-16 90.5 105 46.7
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.3e-16 90.1 116 43.1
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 1.7e-16 89.7 105 40.0
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 2.3e-16 89.4 128 37.5
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 3.0e-16 89.0 99 40.4
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 5.1e-16 88.2 132 32.6
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 8.7e-16 87.4 105 39.0
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.9e-15 86.3 123 36.6
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 3.3e-15 85.5 127 33.9
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 7.3e-15 84.3 103 37.9
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 9.6e-15 84.0 127 33.9
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 9.6e-15 84.0 127 33.9
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 1.6e-14 83.2 127 33.9
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 2.8e-14 82.4 116 37.9
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 3.6e-14 82.0 117 37.6
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 3.6e-14 82.0 116 35.3
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.6e-14 82.0 93 40.9
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 4.8e-14 81.6 123 39.0
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.4e-13 80.1 99 38.4
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 9.0e-13 77.4 102 39.2
GSVIVG01032966001 Vitis vinifera HOM05D007742 ORTHO05D004072 9.0e-13 77.4 47 66.0
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 1.2e-12 77.0 118 38.1
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 1.5e-12 76.6 100 42.0
Dinv12439 Davidia involucrata HOM05D007742 ORTHO05D004072 1.5e-12 76.6 57 59.6
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 7.6e-12 74.3 107 37.4
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 1.3e-11 73.6 106 37.7
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.3e-11 73.6 95 40.0
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 1.7e-11 73.2 53 62.3
Lj7P618T64 Lonicera japonica HOM05D007742 ORTHO05D004072 3.8e-11 72.0 86 44.2
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 3.8e-11 72.0 119 33.6
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 6.4e-11 71.2 90 36.7
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 1.1e-10 70.5 114 34.2
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 1.1e-10 70.5 105 34.3
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 4.2e-10 68.6 91 41.8
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 5.4e-10 68.2 105 31.4
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 5.4e-10 68.2 114 33.3
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 9.3e-10 67.4 124 33.9
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.2e-09 67.0 101 37.6
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 2.1e-09 66.2 109 33.0
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 2.7e-09 65.9 114 34.2
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 3.5e-09 65.5 112 33.9
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 4.6e-09 65.1 87 35.6
MBI11_g02483_MAGBIO Magnolia biondii HOM05D056835 ORTHO05D004072 4.6e-09 65.1 45 62.2
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 6.0e-09 64.7 92 32.6
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 6.0e-09 64.7 100 36.0
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 6.0e-09 64.7 94 41.5
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 6.0e-09 64.7 86 36.0
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 6.0e-09 64.7 92 32.6
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 6.0e-09 64.7 97 39.2
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 7.8e-09 64.3 118 29.7
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 1.0e-08 63.9 50 52.0
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.3e-08 63.5 75 41.3
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.3e-08 63.5 40 60.0
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.7e-08 63.2 57 49.1
BolC3t13228H Brassica oleracea HOM05D009880 ORTHO05D004072 2.3e-08 62.8 68 39.7
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 3.0e-08 62.4 80 35.0
vmacro18395 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 3.0e-08 62.4 59 50.8
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 3.9e-08 62.0 59 49.2
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 5.1e-08 61.6 50 48.0
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 8.7e-08 60.8 48 52.1
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.1e-07 60.5 40 55.0
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 1.9e-07 59.7 50 46.0
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 1.9e-07 59.7 88 37.5
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 2.5e-07 59.3 87 36.8
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 2.5e-07 59.3 51 49.0
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.3e-07 58.9 51 47.1
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 3.3e-07 58.9 106 30.2
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 3.3e-07 58.9 50 46.0
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 3.3e-07 58.9 50 46.0
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 4.3e-07 58.5 62 45.2
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 5.6e-07 58.2 88 36.4
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 5.6e-07 58.2 57 47.4
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 9.6e-07 57.4 38 55.3
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 9.6e-07 57.4 38 55.3
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 9.6e-07 57.4 66 42.4
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 9.6e-07 57.4 48 47.9
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 1.3e-06 57.0 46 50.0
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.3e-06 57.0 54 40.7
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.3e-06 57.0 43 51.2
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.3e-06 57.0 43 51.2
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.3e-06 57.0 38 55.3
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.3e-06 57.0 38 55.3
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 1.6e-06 56.6 40 55.0
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 2.8e-06 55.8 46 52.2
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 8.1e-06 54.3 50 46.0


User provided reference genes

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