Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 0.0e+00 1471.8 751 100.0
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 8.8e-238 827.4 779 60.1
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 9.5e-216 754.2 672 59.8
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 2.8e-215 752.7 760 57.4
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.5e-213 746.9 772 55.2
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 1.3e-212 743.8 765 56.1
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 7.8e-210 734.6 763 54.0
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 4.7e-207 725.3 779 54.3
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 2.3e-206 723.0 615 62.8
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 7.6e-205 718.0 772 53.0
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 8.3e-204 714.5 772 52.7
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 1.9e-203 713.4 727 54.9
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 1.6e-202 710.3 817 50.3
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.3e-201 707.2 617 60.8
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 2.3e-201 706.4 774 53.5
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 8.6e-201 704.5 776 52.7
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.2e-199 700.7 726 53.2
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.4e-198 697.2 695 57.1
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 2.0e-197 693.3 760 54.2
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 7.6e-197 691.4 826 50.0
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 2.2e-196 689.9 770 52.3
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 6.4e-196 688.3 768 52.2
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 6.4e-196 688.3 729 54.3
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 6.4e-196 688.3 720 54.9
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 5.4e-195 685.3 627 57.6
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 5.4e-195 685.3 723 54.1
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 1.0e-193 681.0 758 54.1
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 1.3e-193 680.6 772 50.9
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 1.3e-193 680.6 769 54.0
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 3.3e-192 676.0 650 57.7
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 4.3e-192 675.6 782 51.8
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 1.3e-191 674.1 772 51.2
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 6.2e-191 671.8 779 52.2
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 8.1e-191 671.4 743 51.1
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.8e-190 670.2 686 54.5
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.2e-189 667.5 782 49.9
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 2.0e-189 666.8 763 51.5
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.6e-189 666.4 660 56.5
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 4.2e-187 659.1 767 50.7
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 1.2e-186 657.5 771 51.9
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 7.9e-186 654.8 783 50.7
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 7.9e-186 654.8 612 56.5
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.3e-185 654.1 776 50.1
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.7e-185 653.7 778 50.4
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 3.9e-185 652.5 784 50.8
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 8.7e-185 651.4 769 51.1
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.9e-184 650.2 808 48.4
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 1.9e-184 650.2 767 50.7
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 2.5e-184 649.8 731 51.7
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 4.3e-184 649.0 827 49.6
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 1.3e-183 647.5 599 57.3
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 1.6e-183 647.1 782 50.3
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 6.2e-183 645.2 828 48.3
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 8.1e-183 644.8 782 49.7
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 1.1e-182 644.4 767 49.4
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 1.4e-182 644.0 766 51.8
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 5.3e-182 642.1 653 53.4
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 9.0e-182 641.3 764 49.3
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 9.9e-181 637.9 775 49.8
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 4.9e-180 635.6 774 48.3
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 8.4e-180 634.8 780 48.5
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 5.5e-179 632.1 766 50.9
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 6.0e-178 628.6 801 47.7
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 6.7e-177 625.2 674 53.4
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 1.3e-175 620.9 778 48.5
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 6.9e-174 615.1 586 56.3
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 2.6e-173 613.2 767 49.5
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 1.7e-172 610.5 786 48.9
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 1.1e-171 607.8 780 48.5
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 1.1e-171 607.8 680 51.5
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 1.4e-171 607.4 763 47.2
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 3.2e-171 606.3 791 47.9
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 5.5e-171 605.5 639 52.7
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 9.3e-171 604.7 791 47.5
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 2.1e-170 603.6 657 51.9
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 6.0e-170 602.1 766 48.4
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 2.5e-168 596.7 787 47.6
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 5.7e-168 595.5 692 49.7
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 1.3e-167 594.3 662 52.3
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 2.2e-164 583.6 761 47.8
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 1.9e-163 580.5 763 48.1
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 4.6e-162 575.9 756 47.4
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.1e-160 571.2 628 50.8
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.5e-160 570.9 488 60.5
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 3.3e-160 569.7 749 47.3
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 2.8e-159 566.6 668 49.6
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 5.3e-158 562.4 784 46.0
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 2.2e-156 557.0 788 43.0
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 2.2e-156 557.0 756 43.1
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 6.5e-156 555.4 624 50.5
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 2.6e-149 533.5 634 47.3
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 9.7e-136 488.4 507 53.8
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 1.3e-132 478.0 416 60.6
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 6.5e-132 475.7 611 47.6
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 4.5e-125 453.0 488 53.3
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 3.2e-123 446.8 711 40.6
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.3e-116 424.1 545 49.2
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 5.7e-112 409.5 670 41.2
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 2.5e-107 394.0 718 37.6
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 8.0e-106 389.0 672 38.2
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 2.1e-98 364.4 601 41.1
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 2.3e-97 360.9 742 35.7
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 4.1e-94 350.1 466 46.1
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 4.7e-90 336.7 498 41.8
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 1.6e-77 295.0 377 48.3
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 6.9e-73 279.6 798 29.7
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 1.9e-59 235.0 681 30.5
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 2.0e-56 224.9 411 39.7
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.2e-53 215.7 226 54.0
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 5.1e-52 210.3 323 43.0
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 3.6e-45 187.6 243 42.4
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 1.3e-42 179.1 205 51.2
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 6.3e-34 150.2 570 24.7
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 1.4e-30 139.0 261 42.1
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.2e-29 136.0 129 56.6
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 5.7e-27 127.1 622 22.2
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.2e-24 119.4 116 54.3
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 4.7e-21 107.5 207 39.1
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 8.8e-20 103.2 94 58.5
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-18 99.4 144 45.1
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 8.2e-18 96.7 122 45.9
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 7.7e-16 90.1 92 57.6
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 6.1e-13 80.5 76 56.6
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 6.8e-12 77.0 109 42.2
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 5.7e-11 73.9 111 42.3
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 9.8e-11 73.2 172 27.9
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 9.1e-09 66.6 97 51.5
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.9e-07 61.6 145 33.8
Nitab4.5_0013630g0020 Nicotiana tabacum HOM05D000463 ORTHO05D001294 8.6e-07 60.1 60 38.3
Nitab4.5_0002383g0090 Nicotiana tabacum HOM05D000463 ORTHO05D001294 1.5e-06 59.3 60 38.3
Nitab4.5_0000207g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 1.9e-06 58.9 60 38.3
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 1.9e-06 58.9 60 38.3
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 2.5e-06 58.5 60 38.3
Migut.H01182 Erythranthe guttata HOM05D000463 ORTHO05D001294 2.5e-06 58.5 88 31.8
Migut.M00816 Erythranthe guttata HOM05D000463 ORTHO05D001294 2.5e-06 58.5 60 36.7
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 2.5e-06 58.5 60 38.3
Peaxi162Scf00027g00271 Petunia axillaris HOM05D000463 ORTHO05D001294 2.5e-06 58.5 60 38.3
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 2.5e-06 58.5 60 40.0
Peaxi162Scf00000g04012 Petunia axillaris HOM05D000463 ORTHO05D001294 3.2e-06 58.2 60 38.3
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 3.2e-06 58.2 60 38.3
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 3.2e-06 58.2 66 36.4
Gohir.D04G143800 Gossypium hirsutum HOM05D000463 ORTHO05D001294 4.2e-06 57.8 60 40.0
Gorai.012G129300 Gossypium raimondii HOM05D000463 ORTHO05D001294 4.2e-06 57.8 60 40.0
Nitab4.5_0001551g0050 Nicotiana tabacum HOM05D000463 ORTHO05D001294 4.2e-06 57.8 60 38.3
Solyc07g063200.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 4.2e-06 57.8 60 38.3
Sopen07g031390 Solanum pennellii HOM05D000463 ORTHO05D001294 4.2e-06 57.8 60 38.3
PGSC0003DMG400012421 Solanum tuberosum HOM05D000114 ORTHO05D000075 4.2e-06 57.8 60 38.3
MSTRG.6838 Avicennia marina HOM05D000463 ORTHO05D001294 5.5e-06 57.4 60 35.0
Nitab4.5_0000662g0220 Nicotiana tabacum HOM05D000463 ORTHO05D001294 5.5e-06 57.4 60 35.0
Oeu019332.1 Olea europaea HOM05D000463 ORTHO05D001294 5.5e-06 57.4 60 35.0
Dinv08303 Davidia involucrata HOM05D000463 ORTHO05D001294 7.2e-06 57.0 60 36.7
Dinv20167 Davidia involucrata HOM05D000463 ORTHO05D001294 7.2e-06 57.0 60 36.7
Peaxi162Scf00069g01319 Petunia axillaris HOM05D000463 ORTHO05D001294 7.2e-06 57.0 60 40.0
Rhsim04G0020400 Rhododendron simsii HOM05D000463 ORTHO05D001294 7.2e-06 57.0 60 36.7
Actinidia35252 Actinidia chinensis HOM05D000300 ORTHO05D000383 9.5e-06 56.6 60 36.7
MSTRG.14363 Avicennia marina HOM05D000463 ORTHO05D001294 9.5e-06 56.6 60 36.7
Hma1.2p1_1738F.1_g299990 Hydrangea macrophylla HOM05D000463 ORTHO05D001294 9.5e-06 56.6 60 36.7
RhsimUnG0031800 Rhododendron simsii HOM05D000463 ORTHO05D001294 9.5e-06 56.6 60 36.7
unitig_744.g24406 Utricularia gibba HOM05D000463 ORTHO05D004638 9.5e-06 56.6 60 41.7
HPP92_015150 Vanilla planifolia HOM05D000463 ORTHO05D001294 9.5e-06 56.6 60 40.0


User provided reference genes

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