Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 6.2e-271 936.8 449 100.0
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 5.1e-140 501.9 450 54.7
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 2.1e-109 400.2 448 45.3
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.5e-99 367.5 458 43.0
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.3e-98 364.4 454 41.6
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.2e-98 363.6 386 46.6
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 2.4e-97 360.1 457 40.7
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 1.5e-96 357.5 456 42.8
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.2e-95 353.6 457 42.5
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 3.8e-95 352.8 455 40.7
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.9e-94 350.5 449 39.4
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 3.6e-93 346.3 460 42.6
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 4.4e-91 339.3 459 38.3
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 3.7e-90 336.3 456 39.0
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.7e-90 336.3 455 38.9
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 6.3e-90 335.5 455 39.6
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 8.2e-90 335.1 454 37.4
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 1.4e-89 334.3 456 39.5
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 4.1e-89 332.8 454 38.5
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 7.0e-89 332.0 457 40.5
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 9.1e-89 331.6 456 37.9
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.2e-88 331.3 456 38.4
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 4.5e-88 329.3 457 41.1
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 2.2e-87 327.0 416 41.3
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.9e-87 326.6 463 41.7
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.9e-86 323.9 458 38.4
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 5.5e-86 322.4 411 40.6
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 9.4e-86 321.6 456 38.6
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.2e-85 321.2 455 38.5
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 6.1e-85 318.9 457 38.9
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 8.0e-85 318.5 457 37.2
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 1.0e-84 318.2 455 39.6
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 4.0e-84 316.2 455 37.1
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 4.0e-84 316.2 457 38.3
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 6.8e-84 315.5 454 37.0
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 1.2e-83 314.7 455 38.9
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.5e-83 314.3 456 37.3
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 4.4e-83 312.8 443 39.7
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 5.7e-83 312.4 458 37.6
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 5.7e-83 312.4 460 37.2
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 1.3e-82 311.2 455 37.1
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 1.7e-82 310.8 455 36.9
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 1.4e-81 307.8 460 38.5
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.8e-81 307.4 451 37.0
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 4.1e-81 306.2 459 36.8
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 5.3e-81 305.8 479 36.1
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 9.1e-81 305.1 505 35.2
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 1.6e-80 304.3 316 49.4
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 2.0e-80 303.9 452 36.9
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 3.5e-80 303.1 455 37.1
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 1.7e-79 300.8 458 36.2
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.7e-79 300.8 455 36.3
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 3.8e-79 299.7 455 36.0
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 5.0e-79 299.3 453 36.0
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 6.5e-79 298.9 379 42.0
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 1.9e-78 297.4 540 32.4
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 6.1e-77 292.4 296 50.0
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 2.3e-76 290.4 470 35.5
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 5.2e-76 289.3 384 40.9
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 3.4e-75 286.6 469 35.2
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 5.7e-75 285.8 448 32.8
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 5.4e-73 279.3 456 35.1
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 5.4e-73 279.3 445 35.7
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 9.1e-73 278.5 410 35.6
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.7e-71 274.2 447 35.3
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.9e-71 273.5 453 34.2
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 6.6e-71 272.3 446 35.4
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.5e-70 271.2 482 34.0
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 2.5e-70 270.4 458 34.5
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 2.5e-70 270.4 452 33.6
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 5.5e-70 269.2 468 35.7
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 5.5e-70 269.2 379 40.4
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 7.2e-70 268.9 453 33.8
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 9.5e-70 268.5 436 36.7
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.1e-69 267.3 455 33.6
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 3.6e-69 266.5 449 39.0
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 3.0e-68 263.5 461 35.8
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.0e-68 263.1 436 36.2
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 5.2e-68 262.7 464 34.3
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.5e-67 261.2 518 33.6
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 2.0e-67 260.8 453 35.3
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 2.6e-67 260.4 387 37.7
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.6e-67 260.4 446 35.0
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.6e-67 260.4 446 35.0
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.6e-67 260.4 429 36.4
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 2.6e-67 260.4 469 35.0
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.4e-67 260.0 429 36.4
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.7e-67 259.2 429 36.1
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 7.5e-67 258.8 453 34.4
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.3e-66 258.1 469 31.8
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 1.3e-66 258.1 446 34.3
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 2.2e-66 257.3 447 34.0
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 6.3e-66 255.8 448 34.4
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.4e-65 254.6 447 33.3
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.8e-65 254.2 457 35.0
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 2.4e-65 253.8 459 34.4
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 3.2e-65 253.4 445 33.7
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 3.2e-65 253.4 459 34.0
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 5.4e-65 252.7 382 38.2
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 7.0e-65 252.3 456 33.6
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 7.0e-65 252.3 451 34.6
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 7.0e-65 252.3 451 34.6
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.6e-64 251.1 456 33.6
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 1.6e-64 251.1 470 34.0
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.0e-64 250.8 456 33.3
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.9e-63 246.9 403 37.5
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 6.6e-63 245.7 458 34.3
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.9e-62 244.2 383 36.3
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.3e-62 243.0 490 31.4
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.2e-61 241.5 475 34.3
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.2e-61 241.5 456 34.0
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.7e-61 239.6 457 33.0
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.8e-60 237.7 486 31.9
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 3.2e-57 226.9 482 33.2
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.7e-56 223.8 468 32.9
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.0e-55 221.9 471 33.3
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 8.6e-55 218.8 472 33.7
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 8.6e-55 218.8 471 33.5
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 5.6e-54 216.1 447 32.0
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 7.3e-54 215.7 443 32.5
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.1e-52 211.8 458 32.1
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 4.0e-52 209.9 308 36.0
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.2e-51 208.4 255 42.7
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 3.4e-51 206.8 309 38.5
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 5.8e-51 206.1 461 30.8
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 4.9e-50 203.0 472 30.1
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 7.1e-49 199.1 492 30.9
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 2.1e-48 197.6 459 32.2
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 6.0e-48 196.1 451 31.5
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 2.5e-46 190.7 460 30.7
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 3.3e-46 190.3 460 30.7
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 5.6e-46 189.5 338 35.5
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 1.6e-45 188.0 463 29.8
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 3.6e-45 186.8 460 29.8
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 3.6e-45 186.8 460 29.8
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.1e-44 183.7 294 37.4
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 1.1e-41 175.3 425 30.1
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 1.9e-41 174.5 237 37.6
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 2.4e-41 174.1 267 39.0
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 2.4e-41 174.1 417 30.0
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.2e-41 173.7 317 31.9
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 4.1e-41 173.3 261 36.0
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 7.1e-33 146.0 250 32.8
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 9.3e-33 145.6 198 41.9
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 3.9e-31 140.2 352 29.5
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 3.9e-31 140.2 291 34.0
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.3e-30 136.7 137 48.2
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.6e-29 134.8 196 42.3
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 1.7e-26 124.8 418 26.3
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.4e-26 122.9 127 47.2
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 5.3e-20 103.2 141 41.1
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 6.9e-20 102.8 194 32.0
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.0e-19 101.3 160 36.2
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 1.5e-14 85.1 174 29.3
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 3.1e-12 77.4 89 44.9
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.9e-10 70.9 130 36.2
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 3.0e-07 60.8 81 40.7
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 3.0e-07 60.8 113 33.6
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 5.7e-06 56.6 61 42.6
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 7.4e-06 56.2 47 55.3


User provided reference genes

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