Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 9.9e-192 673.3 348 100.0
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 4.2e-142 508.4 312 82.1
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 9.4e-142 507.3 286 87.4
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 9.4e-142 507.3 312 81.7
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.2e-141 506.9 340 78.2
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.0e-140 503.8 326 79.1
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 2.3e-140 502.7 342 76.0
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 3.0e-140 502.3 330 78.2
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 3.9e-140 501.9 310 81.0
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 5.1e-140 501.5 279 87.5
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 1.5e-139 500.0 345 75.7
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 1.5e-139 500.0 347 75.2
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 1.3e-138 496.9 350 75.1
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 4.8e-138 495.0 345 75.1
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 6.3e-138 494.6 322 79.5
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 1.4e-137 493.4 292 83.2
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 1.4e-137 493.4 349 73.6
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 1.8e-137 493.0 342 76.0
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 1.8e-137 493.0 337 76.3
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 2.4e-137 492.7 346 75.4
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 5.3e-137 491.5 344 75.0
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.5e-136 490.0 345 73.9
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 1.5e-136 490.0 347 72.9
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.0e-136 489.6 339 73.7
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 2.0e-136 489.6 339 78.8
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 2.6e-136 489.2 281 85.1
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 2.6e-136 489.2 340 74.7
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 3.5e-136 488.8 340 72.4
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 4.5e-136 488.4 333 76.9
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 4.5e-136 488.4 346 73.7
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 4.5e-136 488.4 344 74.4
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 5.9e-136 488.0 283 84.8
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 7.7e-136 487.6 293 82.9
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 1.7e-135 486.5 348 74.1
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 2.2e-135 486.1 340 73.8
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 2.9e-135 485.7 353 72.0
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 3.8e-135 485.3 278 86.3
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 6.5e-135 484.6 338 74.6
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 1.1e-134 483.8 301 80.1
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.9e-134 483.0 274 85.4
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 3.2e-134 482.3 289 81.3
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 3.2e-134 482.3 344 73.0
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.2e-134 482.3 349 73.4
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.2e-134 481.9 274 85.4
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 7.2e-134 481.1 293 79.9
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 7.2e-134 481.1 283 83.0
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 7.2e-134 481.1 328 76.5
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 7.2e-134 481.1 340 73.2
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 9.4e-134 480.7 342 71.6
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 1.2e-133 480.3 272 85.3
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 6.1e-133 478.0 275 85.5
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 8.0e-133 477.6 279 84.6
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 8.0e-133 477.6 287 81.2
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.0e-132 477.2 283 82.3
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 1.8e-132 476.5 284 80.6
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 3.0e-132 475.7 283 82.0
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 8.8e-132 474.2 278 83.5
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 8.8e-132 474.2 282 81.9
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 1.5e-131 473.4 286 80.1
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 1.5e-131 473.4 285 81.4
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 2.0e-131 473.0 281 82.9
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 4.4e-131 471.9 278 82.7
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 4.4e-131 471.9 278 82.4
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 4.4e-131 471.9 278 82.4
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 4.4e-131 471.9 340 71.8
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 4.4e-131 471.9 296 80.1
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 4.4e-131 471.9 287 81.5
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 5.7e-131 471.5 279 81.7
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 7.5e-131 471.1 302 78.1
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 9.7e-131 470.7 297 77.1
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 1.7e-130 469.9 278 81.7
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.7e-130 469.9 299 78.3
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 2.2e-130 469.5 278 81.7
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 2.2e-130 469.5 278 81.7
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 2.8e-130 469.2 278 81.7
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 2.8e-130 469.2 280 81.4
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 4.8e-130 468.4 278 81.3
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 4.8e-130 468.4 296 78.4
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 4.8e-130 468.4 346 70.5
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 1.1e-129 467.2 278 82.4
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 1.4e-129 466.8 269 84.0
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 2.0e-128 463.0 311 76.8
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 3.2e-126 455.7 285 78.9
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 7.2e-126 454.5 270 81.9
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 8.0e-125 451.1 326 70.6
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 1.4e-124 450.3 301 76.1
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 5.2e-124 448.4 326 70.2
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 8.8e-124 447.6 311 72.0
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 8.8e-124 447.6 301 75.7
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.7e-122 443.4 261 84.7
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 1.8e-121 439.9 318 69.8
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 2.0e-120 436.4 340 69.7
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 7.7e-120 434.5 327 68.5
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.5e-110 403.7 272 76.8
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 3.6e-109 399.1 304 70.7
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 5.7e-107 391.7 211 91.5
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 2.7e-104 382.9 248 74.6
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 3.9e-103 379.0 236 79.7
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 8.0e-101 371.3 234 78.6
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.8e-100 370.2 233 76.8
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 5.2e-100 368.6 244 78.7
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 1.7e-98 363.6 305 60.7
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 5.4e-97 358.6 262 66.4
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 1.1e-94 350.9 256 73.0
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.8e-93 346.3 202 80.7
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.7e-93 345.5 257 70.8
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.2e-90 336.7 266 68.0
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 6.0e-88 328.6 257 66.1
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 1.9e-86 323.6 189 82.0
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.9e-82 308.9 322 56.2
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 4.6e-80 302.4 263 55.9
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 1.2e-75 287.7 158 87.3
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 3.6e-69 266.2 162 78.4
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 1.9e-62 243.8 206 63.1
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 5.8e-59 232.3 159 74.8
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 3.1e-52 209.9 299 42.5
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 4.9e-50 202.6 118 86.4
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 6.5e-50 202.2 128 77.3
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 1.4e-49 201.1 167 62.3
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 3.2e-49 199.9 283 42.4
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 5.1e-47 192.6 116 81.9
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 2.1e-45 187.2 223 48.0
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 2.8e-45 186.8 127 74.0
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 5.3e-36 156.0 239 43.1
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 2.9e-34 150.2 304 35.2
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.6e-32 143.3 74 93.2
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 5.3e-28 129.4 72 84.7
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 1.2e-27 128.3 76 78.9
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 4.5e-27 126.3 283 31.1
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 5.0e-26 122.9 73 80.8
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 7.9e-24 115.5 336 28.3
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 7.4e-22 109.0 121 56.2
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.2e-21 107.5 117 49.6
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 3.0e-15 87.0 80 60.0
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 2.0e-14 84.3 70 65.7
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 5.0e-10 69.7 43 76.7
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 1.1e-09 68.6 139 35.3
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 2.3e-07 60.8 59 59.3
FvH4_6g53451 Fragaria vesca HOM05D005629 ORTHO05D196308 4.0e-07 60.1 74 45.9
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 1.2e-06 58.5 50 64.0
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 2.0e-06 57.8 44 63.6


User provided reference genes

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