Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 1.8e-243 845.5 435 100.0
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 9.5e-192 673.7 439 80.6
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 3.6e-191 671.8 433 80.1
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.5e-189 666.4 433 79.9
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 7.5e-189 664.1 433 79.7
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 9.8e-189 663.7 428 79.4
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 2.7e-186 655.6 428 78.5
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 1.1e-184 650.2 428 77.3
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 4.7e-183 644.8 433 76.7
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 8.0e-183 644.0 433 76.7
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.0e-181 639.4 434 75.3
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 2.9e-180 635.6 428 75.9
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 2.9e-180 635.6 433 75.1
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 8.3e-180 634.0 435 75.4
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.4e-179 633.3 435 75.6
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 3.2e-179 632.1 433 74.4
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 5.4e-179 631.3 433 74.4
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 2.7e-178 629.0 433 73.9
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 3.9e-177 625.2 428 75.5
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 4.3e-176 621.7 435 73.8
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 4.3e-176 621.7 424 74.8
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.2e-175 620.2 433 73.0
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.1e-175 619.4 423 76.1
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 4.7e-175 618.2 426 74.9
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.4e-174 616.7 427 74.2
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 1.8e-174 616.3 427 75.2
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 5.2e-174 614.8 427 74.2
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 6.8e-174 614.4 426 74.4
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.2e-173 613.6 427 74.5
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.5e-173 613.2 428 73.1
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.0e-173 612.8 428 74.1
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 4.4e-173 611.7 435 73.3
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 4.4e-173 611.7 426 73.2
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 7.5e-173 610.9 433 70.9
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 3.7e-172 608.6 435 72.4
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.7e-172 608.6 428 73.6
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 4.9e-172 608.2 428 73.6
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.9e-172 608.2 428 73.4
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.4e-172 607.8 428 72.4
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 6.4e-172 607.8 426 72.3
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.9e-171 606.3 435 71.3
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 5.4e-171 604.7 427 72.6
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.2e-170 603.6 428 72.4
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.2e-170 603.6 426 73.0
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.6e-170 603.2 428 72.2
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 2.7e-170 602.4 428 72.7
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.7e-169 599.7 426 72.5
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 2.3e-169 599.4 426 72.1
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 3.0e-169 599.0 434 69.6
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 6.6e-169 597.8 428 73.4
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.1e-168 597.0 435 72.0
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 9.5e-168 594.0 427 72.6
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 9.5e-168 594.0 426 70.9
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 1.6e-167 593.2 427 70.7
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.1e-167 592.8 426 71.1
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 8.1e-167 590.9 426 70.7
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 1.4e-166 590.1 427 70.5
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.0e-166 588.6 428 71.3
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 4.0e-166 588.6 423 71.4
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 5.2e-166 588.2 435 72.0
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 8.9e-166 587.4 430 68.4
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 8.9e-166 587.4 433 69.3
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.3e-164 583.6 429 72.3
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 3.7e-164 582.0 428 70.6
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.9e-163 579.7 427 71.4
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 4.1e-163 578.6 461 67.2
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 5.4e-163 578.2 426 72.3
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 5.4e-163 578.2 428 70.8
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 2.1e-162 576.2 430 68.4
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 3.0e-161 572.4 428 69.2
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 5.1e-161 571.6 423 66.2
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 6.6e-161 571.2 460 67.0
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 4.3e-160 568.5 433 70.0
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 5.6e-160 568.2 428 69.9
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 7.3e-160 567.8 422 71.1
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.2e-159 567.0 433 70.2
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.1e-159 566.2 468 64.5
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 3.6e-159 565.5 405 72.1
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 5.2e-158 561.6 433 67.2
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.2e-157 560.5 444 68.2
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.7e-156 556.6 430 67.4
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 2.9e-156 555.8 428 67.8
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.9e-155 553.1 423 66.7
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 7.1e-155 551.2 427 67.4
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 4.6e-154 548.5 428 66.6
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 3.3e-152 542.3 426 66.4
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 2.1e-151 539.7 427 68.6
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 3.6e-151 538.9 429 65.3
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 4.8e-151 538.5 428 65.2
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 6.9e-150 534.6 430 64.9
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 9.0e-150 534.3 430 64.9
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.2e-149 533.9 430 64.0
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.2e-149 533.9 429 64.8
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 2.2e-148 529.6 430 64.4
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 3.8e-148 528.9 429 64.6
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 3.8e-148 528.9 385 72.2
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 4.9e-148 528.5 429 64.3
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 6.4e-148 528.1 425 64.7
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 2.3e-145 519.6 429 63.9
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 8.7e-145 517.7 428 63.6
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 1.1e-144 517.3 428 63.1
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 1.1e-144 517.3 428 63.1
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.5e-144 516.9 421 62.5
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.9e-144 516.5 428 64.7
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.9e-144 516.5 324 80.2
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 2.5e-144 516.2 428 63.3
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 9.6e-144 514.2 429 63.2
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 3.6e-143 512.3 428 63.3
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 3.6e-143 512.3 429 63.2
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 4.8e-143 511.9 429 63.2
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 8.1e-143 511.1 313 82.4
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.8e-142 510.0 431 62.4
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 4.5e-141 505.4 445 63.1
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.8e-141 505.0 428 64.7
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 1.9e-139 500.0 359 68.5
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 9.3e-139 497.7 430 61.4
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 1.6e-138 496.9 427 62.1
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 2.1e-138 496.5 383 66.8
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.5e-138 495.7 419 62.1
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 2.3e-137 493.0 447 59.5
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 9.6e-136 487.6 387 65.1
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.1e-127 459.9 431 55.0
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 4.8e-127 458.8 431 54.5
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 2.4e-126 456.4 428 54.9
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 3.3e-120 436.0 455 51.9
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 4.5e-117 425.6 389 61.4
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 1.9e-115 420.2 399 58.6
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 7.9e-114 414.8 432 51.9
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.0e-108 397.9 286 69.9
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 8.5e-108 394.8 241 83.0
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 9.4e-107 391.3 238 83.6
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.1e-102 377.9 436 53.9
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 7.0e-102 375.2 337 60.8
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 2.9e-100 369.8 355 57.2
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.6e-98 364.0 356 56.7
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.9e-71 273.5 436 39.2
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 2.8e-66 256.9 325 47.1
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.0e-66 255.4 214 64.0
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 2.7e-61 240.4 338 39.9
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 7.3e-59 232.3 176 69.9
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 2.2e-55 220.7 380 40.5
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 3.7e-55 219.9 194 60.3
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.1e-49 201.8 305 42.6
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 2.3e-49 200.7 194 55.7
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 5.1e-44 183.0 142 62.7
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 4.4e-40 169.9 253 45.5
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 1.7e-36 157.9 319 32.3
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.2e-32 145.2 150 54.7
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 3.2e-30 137.1 105 68.6
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.2e-26 122.9 119 52.9
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 3.4e-24 117.1 76 75.0
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 4.9e-23 113.2 125 48.0
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.1e-22 112.1 78 71.8
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.1e-22 112.1 78 71.8
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 4.2e-14 83.6 131 42.7
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 3.5e-13 80.5 48 81.2
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.1e-11 75.5 70 61.4
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 1.3e-10 72.0 53 73.6
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.0e-08 64.7 49 63.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.0e-08 64.7 49 63.3
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.0e-08 64.7 52 63.5
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 3.8e-07 60.5 52 55.8
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 6.5e-07 59.7 37 70.3
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 1.4e-06 58.5 202 23.8
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 1.4e-06 58.5 202 24.3
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.9e-06 58.2 202 24.3
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 1.9e-06 58.2 202 24.8
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 1.9e-06 58.2 202 24.8
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 2.5e-06 57.8 202 24.8
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 2.5e-06 57.8 202 24.8
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 2.5e-06 57.8 202 24.8
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 2.5e-06 57.8 202 24.3
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 2.5e-06 57.8 202 24.3
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 3.2e-06 57.4 202 24.3
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 3.2e-06 57.4 202 24.3
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 3.2e-06 57.4 202 23.8
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.2e-06 57.4 48 54.2
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 4.2e-06 57.0 202 24.3
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 4.2e-06 57.0 202 23.8
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 4.2e-06 57.0 202 24.3
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 4.2e-06 57.0 48 54.2
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 5.5e-06 56.6 202 24.3


User provided reference genes

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