Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00440 Coffea canephora HOM05D002973 ORTHO05D003383 2.9e-58 228.4 120 100.0
GSVIVG01001843001 Vitis vinifera HOM05D002973 ORTHO05D003383 5.2e-31 137.9 104 67.3
CSS0002062 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D003383 1.1e-30 136.7 108 62.0
Dinv25691 Davidia involucrata HOM05D002973 ORTHO05D003383 1.1e-30 136.7 106 64.2
Hma1.2p1_1484F.1_g286320 Hydrangea macrophylla HOM05D002973 ORTHO05D003383 2.8e-29 132.1 102 65.7
Lsat_1_v5_gn_4_185701 Lactuca sativa HOM05D002973 ORTHO05D003383 1.8e-28 129.4 104 59.6
Rhsim08G0046000 Rhododendron simsii HOM05D002973 ORTHO05D003383 1.8e-28 129.4 106 65.1
Nn3g16556 Nelumbo nucifera HOM05D002973 ORTHO05D003383 2.6e-27 125.6 104 62.5
MBI11_g02884_MAGBIO Magnolia biondii HOM05D002973 ORTHO05D003383 3.5e-27 125.2 104 61.5
Aqoxy3G01440 Aquilegia oxysepala HOM05D002973 ORTHO05D003383 4.5e-27 124.8 104 59.6
Lj7A606G74 Lonicera japonica HOM05D002973 ORTHO05D003383 1.0e-26 123.6 110 59.1
Nn4g22430 Nelumbo nucifera HOM05D002973 ORTHO05D003383 1.3e-26 123.2 104 61.5
TAR371G1231 Trochodendron aralioides HOM05D000557 ORTHO05D003383 3.8e-26 121.7 102 59.8
RcHm_v2.0_Chr4g0431621 Rosa chinensis HOM05D002973 ORTHO05D003383 7.2e-25 117.5 104 56.7
PSO478G4301 Papaver somniferum HOM05D002973 ORTHO05D003383 9.4e-25 117.1 104 57.7
vmacro18317 Vaccinium macrocarpon HOM05D002973 ORTHO05D003383 9.4e-25 117.1 153 48.4
TAR374G0550 Trochodendron aralioides HOM05D002973 ORTHO05D003383 1.2e-24 116.7 104 57.7
TAR622G0734 Trochodendron aralioides HOM05D002973 ORTHO05D003383 1.2e-24 116.7 104 58.7
Cpa.g.sc1453.1 Carica papaya HOM05D002973 ORTHO05D003383 2.1e-24 115.9 104 56.7
MBI06_g28881_MAGBIO Magnolia biondii HOM05D002973 ORTHO05D003383 2.1e-24 115.9 104 57.7
ATR0686G092 Amborella trichopoda HOM05D002973 ORTHO05D003383 3.6e-24 115.2 103 57.3
HanXRQChr15g0487061 Helianthus annuus HOM05D002973 ORTHO05D003383 3.6e-24 115.2 105 59.0
Manes.12G016000 Manihot esculenta HOM05D002973 ORTHO05D003383 4.7e-24 114.8 104 54.8
PSO017G6775 Papaver somniferum HOM05D002973 ORTHO05D003383 6.1e-24 114.4 104 56.7
Cfa009306 Carpinus fangiana HOM05D002973 ORTHO05D003383 1.4e-23 113.2 104 55.8
FAN17G2795 Fragaria x ananassa HOM05D002973 ORTHO05D003383 1.4e-23 113.2 104 54.8
Eucgr.B03456 Eucalyptus grandis HOM05D002973 ORTHO05D003383 1.8e-23 112.8 104 53.8
FAN07G2476 Fragaria x ananassa HOM05D002973 ORTHO05D003383 1.8e-23 112.8 104 54.8
FAN22G1164 Fragaria x ananassa HOM05D002973 ORTHO05D003383 2.3e-23 112.5 104 54.8
MD16G1109700 Malus domestica HOM05D002973 ORTHO05D003383 2.3e-23 112.5 104 54.8
Prupe.1G235200 Prunus persica HOM05D002973 ORTHO05D003383 2.3e-23 112.5 104 54.8
CAN.G34.18 Capsicum annuum HOM05D002973 ORTHO05D003383 4.0e-23 111.7 105 55.2
CiPaw.06G063000 Carya illinoinensis HOM05D002973 ORTHO05D003383 4.0e-23 111.7 104 54.8
Manes.13G014800 Manihot esculenta HOM05D002973 ORTHO05D003383 4.0e-23 111.7 104 52.9
FvH4_4g24610 Fragaria vesca HOM05D002973 ORTHO05D003383 6.7e-23 110.9 104 53.8
FAN12G0612 Fragaria x ananassa HOM05D002973 ORTHO05D003383 6.7e-23 110.9 104 53.8
Gohir.D05G312500 Gossypium hirsutum HOM05D002973 ORTHO05D003383 1.2e-22 110.2 104 55.8
Gorai.009G333800 Gossypium raimondii HOM05D002973 ORTHO05D003383 1.2e-22 110.2 104 55.8
Lalb_Chr08g0230741 Lupinus albus HOM05D002973 ORTHO05D003383 1.5e-22 109.8 105 53.3
CDE09G1054 Ceratophyllum demersum HOM05D002973 ORTHO05D003383 2.0e-22 109.4 104 51.9
Glyma.18G010000 Glycine max HOM05D002973 ORTHO05D003383 2.0e-22 109.4 104 52.9
Aa31LG1G1580 Aethionema arabicum HOM05D002973 ORTHO05D003383 2.6e-22 109.0 116 50.9
Gohir.A05G311400 Gossypium hirsutum HOM05D002973 ORTHO05D003383 2.6e-22 109.0 104 54.8
Thecc.02G273000 Theobroma cacao HOM05D002973 ORTHO05D003383 2.6e-22 109.0 104 54.8
BcaB02g06447 Brassica carinata HOM05D002973 ORTHO05D003383 3.3e-22 108.6 104 53.8
COL.COLO4_23606 Corchorus olitorius HOM05D002973 ORTHO05D003383 3.3e-22 108.6 104 54.8
Peaxi162Scf00128g00824 Petunia axillaris HOM05D002973 ORTHO05D003383 3.3e-22 108.6 104 55.8
BolC8t52192H Brassica oleracea HOM05D002973 ORTHO05D003383 4.4e-22 108.2 110 50.0
CANSAT64G0445 Cannabis sativa HOM05D002973 ORTHO05D003383 4.4e-22 108.2 106 54.7
Dinv14789 Davidia involucrata HOM05D002973 ORTHO05D003383 4.4e-22 108.2 105 55.2
Potri.008G179700 Populus trichocarpa HOM05D002973 ORTHO05D003383 4.4e-22 108.2 104 53.8
A09p62970 Brassica napus HOM05D002973 ORTHO05D003383 5.7e-22 107.8 110 50.0
BraA09t41655Z Brassica rapa HOM05D002973 ORTHO05D003383 5.7e-22 107.8 110 50.0
ATR0712G015 Amborella trichopoda HOM05D002973 ORTHO05D003383 7.5e-22 107.5 102 54.9
Haze_12337 Corylus avellana HOM05D002973 ORTHO05D003383 7.5e-22 107.5 109 53.2
CDE02G4381 Ceratophyllum demersum HOM05D002973 ORTHO05D003383 9.7e-22 107.1 104 50.0
Peaxi162Scf00797g00110 Petunia axillaris HOM05D002973 ORTHO05D003383 9.7e-22 107.1 102 54.9
BcaC07g41640 Brassica carinata HOM05D002973 ORTHO05D003383 1.3e-21 106.7 104 51.0
Gorai.008G163200 Gossypium raimondii HOM05D002973 ORTHO05D003383 1.3e-21 106.7 105 53.3
Potri.010G055000 Populus trichocarpa HOM05D002973 ORTHO05D003383 1.3e-21 106.7 104 53.8
Actinidia08093 Actinidia chinensis HOM05D002973 ORTHO05D003383 1.7e-21 106.3 105 50.5
C08p46420 Brassica napus HOM05D002973 ORTHO05D003383 1.7e-21 106.3 110 49.1
Phvul.001G258700 Phaseolus vulgaris HOM05D002973 ORTHO05D003383 1.7e-21 106.3 104 51.9
Duzib251G0262 Durio zibethinus HOM05D002973 ORTHO05D003383 2.8e-21 105.5 104 53.8
Sed0004209 Sechium edule HOM05D002973 ORTHO05D003383 2.8e-21 105.5 101 50.5
Duzib268G1148 Durio zibethinus HOM05D002973 ORTHO05D003383 3.7e-21 105.1 119 50.4
Gohir.D12G151700 Gossypium hirsutum HOM05D002973 ORTHO05D003383 3.7e-21 105.1 105 52.4
Aqoxy2G02323 Aquilegia oxysepala HOM05D002973 ORTHO05D003383 4.8e-21 104.8 105 53.3
Cpa.g.sc130.35 Carica papaya HOM05D002973 ORTHO05D003383 4.8e-21 104.8 109 49.5
Cc11_g16470 Coffea canephora HOM05D002973 ORTHO05D003383 4.8e-21 104.8 105 53.3
Dinv18161 Davidia involucrata HOM05D002973 ORTHO05D003383 4.8e-21 104.8 105 53.3
Dinv18165 Davidia involucrata HOM05D002973 ORTHO05D003383 4.8e-21 104.8 105 53.3
VMungo1383G0404 Vigna mungo HOM05D002973 ORTHO05D003383 4.8e-21 104.8 104 51.9
BcaC05g25245 Brassica carinata HOM05D002973 ORTHO05D003383 6.3e-21 104.4 106 52.8
PSO782G4746 Papaver somniferum HOM05D002973 ORTHO05D003383 8.3e-21 104.0 103 52.4
BcaB08g34296 Brassica carinata HOM05D002973 ORTHO05D003383 1.1e-20 103.6 109 53.2
C05p11300 Brassica napus HOM05D002973 ORTHO05D003383 1.4e-20 103.2 103 53.4
BolC5t29879H Brassica oleracea HOM05D002973 ORTHO05D003383 1.4e-20 103.2 103 53.4
MELO3C010724.2 Cucumis melo HOM05D002973 ORTHO05D003383 1.8e-20 102.8 101 51.5
CsaV3_2G025280 Cucumis sativus L. HOM05D002973 ORTHO05D003383 1.8e-20 102.8 101 51.5
BraA06t24149Z Brassica rapa HOM05D002973 ORTHO05D003383 2.4e-20 102.4 104 52.9
CSS0005812 Camellia sinensis var. sinensis HOM05D002973 ORTHO05D003383 2.4e-20 102.4 110 59.1
Lj6A820T77 Lonicera japonica HOM05D002973 ORTHO05D003383 2.4e-20 102.4 108 50.9
Atru.chr11.2229 Acer truncatum HOM05D002973 ORTHO05D003383 4.1e-20 101.7 110 51.8
AL1G25210 Arabidopsis lyrata HOM05D002973 ORTHO05D003383 4.1e-20 101.7 107 52.3
EL10Ac6g13424 Beta vulgaris HOM05D002973 ORTHO05D003383 4.1e-20 101.7 112 48.2
BcaC09g50376 Brassica carinata HOM05D002973 ORTHO05D003383 4.1e-20 101.7 108 50.9
Lalb_Chr07g0187271 Lupinus albus HOM05D002973 ORTHO05D003383 4.1e-20 101.7 104 50.0
Lalb_Chr13g0294121 Lupinus albus HOM05D002973 ORTHO05D003383 4.1e-20 101.7 104 50.0
PSO063G2262 Papaver somniferum HOM05D002973 ORTHO05D003383 4.1e-20 101.7 104 53.8
PGR102G2150 Punica granatum HOM05D002973 ORTHO05D003383 4.1e-20 101.7 128 43.8
SGA_v2.0_scaffold87G27122 Striga asiatica HOM05D002973 ORTHO05D003383 4.1e-20 101.7 109 50.5
AT1G13450 Arabidopsis thaliana HOM05D002973 ORTHO05D003383 5.3e-20 101.3 105 51.4
Cc00_g33210 Coffea canephora HOM05D002973 ORTHO05D003383 5.3e-20 101.3 70 90.0
Ciclev10031750m.g Citrus clementina HOM05D002973 ORTHO05D003383 7.0e-20 100.9 101 50.5
Ah.03g133800 Amaranthus hybridus HOM05D002973 ORTHO05D003383 9.1e-20 100.5 116 44.8
Aqoxy5G03548 Aquilegia oxysepala HOM05D002973 ORTHO05D003383 9.1e-20 100.5 102 48.0
Carub.0005s0384 Capsella rubella HOM05D002973 ORTHO05D003383 9.1e-20 100.5 99 54.5
AUR62024171 Chenopodium quinoa HOM05D002973 ORTHO05D003383 9.1e-20 100.5 124 46.0
Sp1g11920 Schrenkiella parvula HOM05D002973 ORTHO05D003383 9.1e-20 100.5 108 50.0
Solyc12g077540.3 Solanum lycopersicum HOM05D002973 ORTHO05D003383 9.1e-20 100.5 104 51.9
Sopen12g028110 Solanum pennellii HOM05D002973 ORTHO05D003383 9.1e-20 100.5 104 51.9
Actinidia36170 Actinidia chinensis HOM05D003882 ORTHO05D004598 1.2e-19 100.1 108 54.6
AT3G25990 Arabidopsis thaliana HOM05D002973 ORTHO05D003383 1.2e-19 100.1 106 52.8
Thhalv10004359m.g Eutrema salsugineum HOM05D002973 ORTHO05D003383 1.2e-19 100.1 105 51.4
Lj6g0020522 Lotus japonicus HOM05D002973 ORTHO05D003383 1.2e-19 100.1 104 50.0
RcHm_v2.0_Chr2g0174361 Rosa chinensis HOM05D002973 ORTHO05D003383 1.2e-19 100.1 109 48.6
ClCG08G017350 Citrullus lanatus HOM05D002973 ORTHO05D003383 1.6e-19 99.8 101 50.5
Prupe.3G300500 Prunus persica HOM05D002973 ORTHO05D003383 1.6e-19 99.8 118 45.8
A02p34230 Brassica napus HOM05D002973 ORTHO05D003383 2.7e-19 99.0 100 53.0
FvH4_6g52740 Fragaria vesca HOM05D002973 ORTHO05D003383 2.7e-19 99.0 123 45.5
MSTRG.7970 Avicennia marina HOM05D002973 ORTHO05D003383 3.5e-19 98.6 108 45.4
A06p09590 Brassica napus HOM05D002973 ORTHO05D003383 3.5e-19 98.6 104 51.9
FAN02G4470 Fragaria x ananassa HOM05D002973 ORTHO05D003383 3.5e-19 98.6 122 45.9
THA.LOC104805259 Tarenaya hassleriana HOM05D002973 ORTHO05D003383 3.5e-19 98.6 100 51.0
BcaC03g17309 Brassica carinata HOM05D002973 ORTHO05D003383 4.5e-19 98.2 100 53.0
C02p52580 Brassica napus HOM05D002973 ORTHO05D003383 4.5e-19 98.2 100 53.0
FAN14G1133 Fragaria x ananassa HOM05D002973 ORTHO05D003383 4.5e-19 98.2 122 45.9
AL5G14650 Arabidopsis lyrata HOM05D002973 ORTHO05D003383 5.9e-19 97.8 106 54.7
MD17G1017400 Malus domestica HOM05D002973 ORTHO05D003383 5.9e-19 97.8 112 51.8
BraA02t08437Z Brassica rapa HOM05D002973 ORTHO05D003383 7.7e-19 97.4 100 52.0
Ca_16491_v3 Cicer arietinum L. HOM05D002973 ORTHO05D003383 7.7e-19 97.4 102 52.0
FAN09G3245 Fragaria x ananassa HOM05D002973 ORTHO05D003383 7.7e-19 97.4 122 45.1
Psat5g093120 Pisum sativum HOM05D002973 ORTHO05D003383 7.7e-19 97.4 102 52.9
Sp2g15210 Schrenkiella parvula HOM05D002973 ORTHO05D003383 1.3e-18 96.7 105 49.5
TPR.G22433 Trifolium pratense HOM05D002973 ORTHO05D003383 1.7e-18 96.3 102 51.0
Gohir.A01G156400 Gossypium hirsutum HOM05D002973 ORTHO05D003383 2.2e-18 95.9 102 49.0
Hma1.2p1_0079F.1_g041680 Hydrangea macrophylla HOM05D002973 ORTHO05D003383 2.2e-18 95.9 107 47.7
TWI36G0464 Tripterygium wilfordii HOM05D002973 ORTHO05D003383 2.2e-18 95.9 109 48.6
BolC2t11333H Brassica oleracea HOM05D002973 ORTHO05D003383 2.9e-18 95.5 100 52.0
ECA232G2650 Erigeron canadensis HOM05D002973 ORTHO05D003383 2.9e-18 95.5 104 47.1
GSVIVG01010324001 Vitis vinifera HOM05D002973 ORTHO05D003383 3.8e-18 95.1 71 62.0
BcaB07g30244 Brassica carinata HOM05D002973 ORTHO05D003383 5.0e-18 94.7 100 52.0
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 6.5e-18 94.4 119 41.2
Gorai.002G190600 Gossypium raimondii HOM05D002973 ORTHO05D003383 1.1e-17 93.6 116 46.6
Aqoxy5G03547 Aquilegia oxysepala HOM05D002973 ORTHO05D003383 1.5e-17 93.2 102 47.1
unitig_22.g6417 Utricularia gibba HOM05D002973 ORTHO05D003383 1.5e-17 93.2 102 45.1
Migut.E00236 Erythranthe guttata HOM05D002973 ORTHO05D003383 1.9e-17 92.8 101 50.5
Dinv33381 Davidia involucrata HOM05D002973 ORTHO05D003383 3.2e-17 92.0 102 51.0
Oeu049162.2 Olea europaea HOM05D002973 ORTHO05D003383 3.2e-17 92.0 136 40.4
Medtr3g085960 Medicago truncatula HOM05D002973 ORTHO05D003383 9.4e-17 90.5 102 50.0
arahy.Tifrunner.gnm1.ann1.KSGU3T Arachis hypogaea HOM05D002973 ORTHO05D003383 1.2e-16 90.1 161 38.5
unitig_8.g3142 Utricularia gibba HOM05D002973 ORTHO05D003383 1.2e-16 90.1 102 44.1
MD13G1109800 Malus domestica HOM05D002973 ORTHO05D003383 2.1e-16 89.4 104 45.2
Ah.02g130540 Amaranthus hybridus HOM05D002973 ORTHO05D003383 2.7e-16 89.0 110 42.7
ECA246G3587 Erigeron canadensis HOM05D002973 ORTHO05D003383 2.7e-16 89.0 104 42.3
Lsat_1_v5_gn_3_29420 Lactuca sativa HOM05D002973 ORTHO05D003383 2.7e-16 89.0 114 42.1
arahy.Tifrunner.gnm1.ann1.UJ6U13 Arachis hypogaea HOM05D002973 ORTHO05D003383 3.6e-16 88.6 165 38.2
HanXRQChr06g0174821 Helianthus annuus HOM05D002973 ORTHO05D003383 2.3e-15 85.9 105 42.9
Hund25434 Selenicereus undatus HOM05D002973 ORTHO05D003383 3.0e-15 85.5 113 44.2
Thhalv10007959m.g Eutrema salsugineum HOM05D002973 ORTHO05D003383 4.0e-15 85.1 101 44.6
Zm00001eb425230 Zea mays HOM05D002973 ORTHO05D003383 5.2e-15 84.7 116 40.5
Duzib248G0932 Durio zibethinus HOM05D002973 ORTHO05D003383 1.2e-14 83.6 119 43.7
CARHR013800 Cardamine hirsuta HOM05D002973 ORTHO05D003383 3.4e-14 82.0 109 43.1
DCAR_007020 Daucus carota HOM05D002973 ORTHO05D003383 4.4e-14 81.6 104 40.4
Eucgr.J02286 Eucalyptus grandis HOM05D002973 ORTHO05D003383 9.8e-14 80.5 67 53.7
HPP92_006268 Vanilla planifolia HOM05D002973 ORTHO05D003383 2.2e-13 79.3 102 42.2
HanXRQChr17g0540041 Helianthus annuus HOM05D002973 ORTHO05D003383 6.3e-13 77.8 105 42.9
Os04g0486400 Oryza sativa ssp. japonica HOM05D002973 ORTHO05D003383 1.4e-12 76.6 112 42.9
Sc11g0000710 Simmondsia chinensis HOM05D002973 ORTHO05D003383 1.8e-12 76.3 100 43.0
Hund06061 Selenicereus undatus HOM05D002973 ORTHO05D003383 2.4e-12 75.9 121 39.7
SEGI_30628 Sequoiadendron giganteum HOM05D002973 ORTHO05D003383 2.4e-12 75.9 107 43.0
AUR62005563 Chenopodium quinoa HOM05D002973 ORTHO05D003383 3.1e-12 75.5 159 34.0
MD06G1052100 Malus domestica HOM05D002973 ORTHO05D003383 3.1e-12 75.5 98 43.9
SEGI_15672 Sequoiadendron giganteum HOM05D002973 ORTHO05D003383 9.1e-12 73.9 101 40.6
TAR629G2091 Trochodendron aralioides HOM05D002973 ORTHO05D003383 1.6e-11 73.2 104 43.3
CSS0038373 Camellia sinensis var. sinensis HOM05D002973 ORTHO05D003383 2.9e-10 68.9 43 69.8
CSS0011594 Camellia sinensis var. sinensis HOM05D002973 ORTHO05D003383 3.8e-10 68.6 40 72.5
CSS0036606 Camellia sinensis var. sinensis HOM05D002973 ORTHO05D003383 3.8e-10 68.6 40 72.5
CSS0037791 Camellia sinensis var. sinensis HOM05D002973 ORTHO05D003383 3.8e-10 68.6 59 64.4
Cc00_g33850 Coffea canephora HOM05D002973 ORTHO05D003383 1.5e-09 66.6 42 97.6
Nitab4.5_0000581g0190 Nicotiana tabacum HOM05D002973 ORTHO05D003383 1.2e-08 63.5 104 39.4
Nitab4.5_0001898g0070 Nicotiana tabacum HOM05D002973 ORTHO05D003383 1.2e-08 63.5 104 39.4
QL03p055293 Quercus lobata HOM05D002973 ORTHO05D003383 2.1e-08 62.8 47 59.6
Sabra08G0137300 Salix brachista HOM05D002973 ORTHO05D003383 3.6e-08 62.0 43 65.1
Sabra10G0050000 Salix brachista HOM05D002973 ORTHO05D003383 3.6e-08 62.0 46 60.9
TWI75G0368 Tripterygium wilfordii HOM05D002973 ORTHO05D003383 4.0e-07 58.5 59 54.2
Migut.K00687 Erythranthe guttata HOM05D002973 ORTHO05D003383 3.4e-06 55.5 101 33.7
FAN01G2002 Fragaria x ananassa HOM05D002973 ORTHO05D003383 9.8e-06 53.9 59 49.2


User provided reference genes

Program Settings