Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g23460 Coffea canephora HOM05D006383 ORTHO05D007815 1.4e-150 536.2 261 100.0
Nitab4.5_0021341g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 2.4e-121 439.1 243 84.0
Solyc01g056340.4 Solanum lycopersicum HOM05D006383 ORTHO05D007815 6.8e-121 437.6 243 83.5
Sopen01g020390 Solanum pennellii HOM05D006383 ORTHO05D007815 7.6e-120 434.1 243 83.5
Lj8A304T42 Lonicera japonica HOM05D006383 ORTHO05D007815 1.7e-119 433.0 253 81.8
GSVIVG01027490001 Vitis vinifera HOM05D006383 ORTHO05D007815 6.4e-119 431.0 246 82.5
CSS0026217 Camellia sinensis var. sinensis HOM05D006383 ORTHO05D007815 1.4e-118 429.9 243 81.9
Actinidia07537 Actinidia chinensis HOM05D006383 ORTHO05D007815 1.2e-117 426.8 243 81.9
Nn1g08377 Nelumbo nucifera HOM05D006383 ORTHO05D007815 2.1e-117 426.0 243 80.2
DCAR_020439 Daucus carota HOM05D006383 ORTHO05D007815 4.6e-117 424.9 247 82.6
HanXRQChr10g0309251 Helianthus annuus HOM05D006383 ORTHO05D007815 4.6e-117 424.9 244 82.4
Nitab4.5_0007118g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 1.0e-116 423.7 266 76.3
Lsat_1_v5_gn_5_82200 Lactuca sativa HOM05D006383 ORTHO05D007815 2.3e-116 422.5 253 79.4
Rhsim01G0101600 Rhododendron simsii HOM05D006383 ORTHO05D007815 3.9e-116 421.8 245 80.8
ECA234G1746 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.1e-115 420.2 243 80.2
Peaxi162Scf00005g01511 Petunia axillaris HOM05D006383 ORTHO05D007815 1.1e-115 420.2 278 73.7
Medtr5g008710 Medicago truncatula HOM05D006383 ORTHO05D007815 1.5e-115 419.9 245 79.6
TAR317G0001 Trochodendron aralioides HOM05D006383 ORTHO05D007815 1.9e-115 419.5 247 78.5
Duzib248G1218 Durio zibethinus HOM05D006383 ORTHO05D007815 2.5e-115 419.1 246 80.5
Glyma.01G231700 Glycine max HOM05D006383 ORTHO05D007815 5.6e-115 417.9 246 77.6
CANSAT01G2053 Cannabis sativa HOM05D006383 ORTHO05D007815 7.3e-115 417.5 242 78.9
TPR.G38040 Trifolium pratense HOM05D006383 ORTHO05D007815 6.2e-114 414.5 246 77.6
LjContig00222g0014398 Lotus japonicus HOM05D006383 ORTHO05D007815 8.1e-114 414.1 242 78.5
Glyma.11G014600 Glycine max HOM05D006383 ORTHO05D007815 1.1e-113 413.7 247 77.3
Dinv26644 Davidia involucrata HOM05D006383 ORTHO05D007815 1.4e-113 413.3 243 80.7
QL10p065235 Quercus lobata HOM05D006383 ORTHO05D007815 4.0e-113 411.8 245 76.7
Haze_11088 Corylus avellana HOM05D006383 ORTHO05D007815 1.5e-112 409.8 245 76.7
Hund03213 Selenicereus undatus HOM05D006383 ORTHO05D007815 2.0e-112 409.5 246 76.8
Migut.L01608 Erythranthe guttata HOM05D006383 ORTHO05D007815 2.6e-112 409.1 244 77.9
CAN.G40.1 Capsicum annuum HOM05D006383 ORTHO05D007815 5.8e-112 407.9 247 78.5
Sc26g0001410 Simmondsia chinensis HOM05D006383 ORTHO05D007815 3.8e-111 405.2 246 77.2
Psat2g186800 Pisum sativum HOM05D006383 ORTHO05D007815 6.4e-111 404.4 246 74.8
Lalb_Chr05g0211431 Lupinus albus HOM05D006383 ORTHO05D007815 8.4e-111 404.1 240 78.3
Phvul.002G035400 Phaseolus vulgaris HOM05D006383 ORTHO05D007815 1.9e-110 402.9 247 75.7
EL10Ac3g06365 Beta vulgaris HOM05D006383 ORTHO05D007815 4.2e-110 401.7 247 73.3
CiPaw.02G126400 Carya illinoinensis HOM05D006383 ORTHO05D007815 1.2e-109 400.2 248 75.8
TWI79G0526 Tripterygium wilfordii HOM05D006383 ORTHO05D007815 2.1e-109 399.4 243 75.3
Cfa008544 Carpinus fangiana HOM05D006383 ORTHO05D007815 3.5e-109 398.7 247 75.3
Prupe.2G049900 Prunus persica HOM05D006383 ORTHO05D007815 4.6e-109 398.3 244 76.6
Ah.07g203930 Amaranthus hybridus HOM05D000443 ORTHO05D001278 7.9e-109 397.5 247 72.9
PGSC0003DMG400031459 Solanum tuberosum HOM05D006383 ORTHO05D007815 1.0e-108 397.1 219 84.9
Hma1.2p1_0122F.1_g057520 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 3.9e-108 395.2 245 76.7
Atru.chr4.4 Acer truncatum HOM05D006383 ORTHO05D007815 8.7e-108 394.0 243 75.7
Potri.013G161700 Populus trichocarpa HOM05D006383 ORTHO05D007815 1.1e-107 393.7 247 74.9
VMungo1215G1626 Vigna mungo HOM05D006383 ORTHO05D007815 4.3e-107 391.7 244 73.8
Manes.15G189200 Manihot esculenta HOM05D006383 ORTHO05D007815 9.6e-107 390.6 248 73.4
Sabra13G0129300 Salix brachista HOM05D006383 ORTHO05D007815 1.6e-106 389.8 253 72.3
SGA_v2.0_scaffold222G42760 Striga asiatica HOM05D006383 ORTHO05D007815 2.4e-105 386.0 246 72.8
Eucgr.E01781 Eucalyptus grandis HOM05D006383 ORTHO05D007815 3.4e-104 382.1 243 74.5
Aqoxy1G01561 Aquilegia oxysepala HOM05D006383 ORTHO05D007815 4.5e-104 381.7 241 72.6
PSO063G0245 Papaver somniferum HOM05D006383 ORTHO05D007815 9.9e-104 380.6 245 73.9
RcHm_v2.0_Chr1g0329651 Rosa chinensis HOM05D006383 ORTHO05D007815 1.7e-103 379.8 243 73.7
PSO782G2360 Papaver somniferum HOM05D006383 ORTHO05D007815 3.8e-103 378.6 245 73.9
Gohir.A04G110100 Gossypium hirsutum HOM05D006383 ORTHO05D007815 6.4e-103 377.9 244 73.8
MD02G1269900 Malus domestica HOM05D006383 ORTHO05D007815 6.4e-103 377.9 241 74.7
CDE09G0807 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 8.4e-103 377.5 246 70.7
Gohir.D04G150300 Gossypium hirsutum HOM05D006383 ORTHO05D007815 1.1e-102 377.1 244 73.8
HPP92_027515 Vanilla planifolia HOM05D006383 ORTHO05D007815 1.1e-102 377.1 245 70.6
Gorai.012G136900 Gossypium raimondii HOM05D006383 ORTHO05D007815 1.9e-102 376.3 244 73.4
unitig_8.g3541 Utricularia gibba HOM05D006383 ORTHO05D007815 2.4e-102 375.9 241 72.6
ClCG05G002590 Citrullus lanatus HOM05D006383 ORTHO05D007815 9.3e-102 374.0 244 73.8
PGR042G0734 Punica granatum HOM05D006383 ORTHO05D007815 2.1e-101 372.9 245 71.0
MELO3C006225.2 Cucumis melo HOM05D006383 ORTHO05D007815 6.0e-101 371.3 249 71.5
AUR62030094 Chenopodium quinoa HOM05D006383 ORTHO05D007815 1.3e-100 370.2 243 69.5
Zm00001eb341540 Zea mays HOM05D006383 ORTHO05D007815 4.3e-99 365.2 242 67.4
Zm00001eb317230 Zea mays HOM05D006383 ORTHO05D007815 2.1e-98 362.8 242 66.5
AL6G44030 Arabidopsis lyrata HOM05D006383 ORTHO05D007815 2.4e-97 359.4 244 70.5
Os01g0104600 Oryza sativa ssp. japonica HOM05D006383 ORTHO05D007815 3.1e-97 359.0 244 66.0
THA.LOC104813077 Tarenaya hassleriana HOM05D006383 ORTHO05D007815 3.1e-97 359.0 247 68.4
Sed0006461 Sechium edule HOM05D006383 ORTHO05D007815 4.0e-97 358.6 244 70.9
Sp6g07220 Schrenkiella parvula HOM05D006383 ORTHO05D007815 2.6e-96 355.9 244 69.7
FAN03G2677 Fragaria x ananassa HOM05D006383 ORTHO05D007815 7.6e-96 354.4 245 69.0
AT4G10180 Arabidopsis thaliana HOM05D006383 ORTHO05D007815 2.2e-95 352.8 246 70.3
FAN10G0291 Fragaria x ananassa HOM05D006383 ORTHO05D007815 3.8e-95 352.1 245 68.6
BcaB01g02763 Brassica carinata HOM05D006383 ORTHO05D007815 4.9e-95 351.7 244 68.9
FAN06G4711 Fragaria x ananassa HOM05D006383 ORTHO05D007815 6.5e-95 351.3 251 67.3
Thhalv10028566m.g Eutrema salsugineum HOM05D006383 ORTHO05D007815 8.4e-95 350.9 244 68.4
FvH4_7g04420 Fragaria vesca HOM05D006383 ORTHO05D007815 8.4e-95 350.9 245 68.2
FAN06G0936 Fragaria x ananassa HOM05D006383 ORTHO05D007815 2.5e-94 349.4 245 67.8
SalBow3G0737 Salvia bowleyana HOM05D006383 ORTHO05D007815 9.3e-94 347.4 206 76.7
SalBow5G2916 Salvia bowleyana HOM05D006383 ORTHO05D007815 9.3e-94 347.4 206 76.7
BolC3t15801H Brassica oleracea HOM05D006383 ORTHO05D007815 1.2e-93 347.1 244 67.2
Carub.0006s2874 Capsella rubella HOM05D006383 ORTHO05D007815 1.6e-93 346.7 241 69.7
A03p28870 Brassica napus HOM05D006383 ORTHO05D007815 2.1e-93 346.3 244 67.2
C03p34900 Brassica napus HOM05D006383 ORTHO05D007815 2.1e-93 346.3 244 66.8
BraA03t12085Z Brassica rapa HOM05D006383 ORTHO05D007815 2.1e-93 346.3 244 67.2
BcaC01g04690 Brassica carinata HOM05D006383 ORTHO05D007815 2.7e-93 345.9 244 66.8
FAN01G1101 Fragaria x ananassa HOM05D006383 ORTHO05D007815 3.5e-93 345.5 245 67.8
CARHR256640 Cardamine hirsuta HOM05D006383 ORTHO05D007815 6.0e-93 344.7 249 66.7
Oeu021235.1 Olea europaea HOM05D006383 ORTHO05D007815 2.2e-87 326.2 254 66.5
Aa31LG9G11770 Aethionema arabicum HOM05D006383 ORTHO05D007815 3.5e-85 318.9 228 66.7
Mapoly0064s0101 Marchantia polymorpha HOM05D006383 ORTHO05D007815 6.9e-81 304.7 243 59.7
SMO351G0573 Selaginella moellendorffii HOM05D006383 ORTHO05D007815 4.2e-78 295.4 243 56.0
ATR0620G042 Amborella trichopoda HOM05D006383 ORTHO05D007815 9.4e-78 294.3 196 68.4
AagrBONN_evm.TU.Sc2ySwM_228.1213 Anthoceros agrestis HOM05D006383 ORTHO05D007815 9.4e-78 294.3 248 57.3
Ciclev10015119m.g Citrus clementina HOM05D006383 ORTHO05D007815 4.3e-75 285.4 170 79.4
Pp3c21_10400 Physcomitrium patens HOM05D006383 ORTHO05D007815 5.7e-75 285.0 245 55.5
Pp3c11_18250 Physcomitrium patens HOM05D006383 ORTHO05D007815 2.2e-74 283.1 249 57.0
Pp3c19_5540 Physcomitrium patens HOM05D006383 ORTHO05D007815 1.1e-70 270.8 245 52.7
Ca_24479_v3 Cicer arietinum L. HOM05D006383 ORTHO05D007815 3.2e-70 269.2 219 62.6
SHI24488 Sapria himalayana HOM05D006383 ORTHO05D007815 4.1e-65 252.3 222 55.4
Thecc.02G151200 Theobroma cacao HOM05D006383 ORTHO05D007815 1.5e-62 243.8 149 78.5
CsaV3_3G010030 Cucumis sativus L. HOM05D006383 ORTHO05D007815 3.2e-62 242.7 243 53.9
CBR_g19443 Chara braunii HOM05D006383 ORTHO05D007815 9.7e-59 231.1 275 44.0
CiPaw.01G204500 Carya illinoinensis HOM05D006383 ORTHO05D007815 9.4e-46 188.0 120 73.3
HPP92_022397 Vanilla planifolia HOM05D006383 ORTHO05D007815 2.9e-26 123.2 81 69.1
Cre13.g571560 Chlamydomonas reinhardtii HOM05D006383 ORTHO05D007815 5.6e-22 109.0 250 28.0
PRCOL_00006914 Prasinoderma coloniale HOM05D006383 ORTHO05D007815 1.1e-20 104.8 318 26.4
Hma1.2p1_0122F.1_g057530 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 3.7e-18 96.3 54 87.0
CDE11G0182 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 4.1e-17 92.8 244 29.9
arahy.Tifrunner.gnm1.ann1.W6TY16 Arachis hypogaea HOM05D000199 ORTHO05D007815 6.8e-12 75.5 69 63.8
MCO10G269 Micromonas commoda HOM05D006383 ORTHO05D007815 5.8e-11 72.4 333 23.4


User provided reference genes

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