Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g22420 Coffea canephora HOM05D003159 ORTHO05D003780 1.9e-30 135.2 69 100.0
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 3.4e-27 124.4 69 92.8
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 1.5e-22 109.0 66 80.3
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 4.3e-22 107.5 66 80.3
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 9.6e-22 106.3 66 78.8
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 1.6e-21 105.5 66 78.8
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 3.6e-21 104.4 66 77.3
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 6.2e-21 103.6 66 78.8
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 1.1e-20 102.8 66 77.3
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 1.1e-20 102.8 66 77.3
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 1.1e-20 102.8 66 77.3
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 4.0e-20 100.9 64 76.6
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 6.9e-20 100.1 66 75.8
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 2.0e-19 98.6 66 74.2
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 3.4e-19 97.8 66 72.7
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 3.4e-19 97.8 66 72.7
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 7.6e-19 96.7 66 74.2
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 1.3e-18 95.9 63 76.2
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 1.7e-18 95.5 65 75.4
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 2.2e-18 95.1 65 73.8
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 2.9e-18 94.7 67 71.6
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 3.8e-18 94.4 66 71.2
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 3.8e-18 94.4 65 70.8
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 3.8e-18 94.4 66 71.2
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 6.4e-18 93.6 65 69.2
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 6.4e-18 93.6 65 72.3
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 8.4e-18 93.2 66 69.7
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 8.4e-18 93.2 65 70.8
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 1.4e-17 92.4 67 71.6
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.4e-17 92.4 65 70.8
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 1.9e-17 92.0 65 69.2
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 1.9e-17 92.0 65 70.8
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.9e-17 92.0 65 70.8
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 1.9e-17 92.0 65 69.2
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 1.9e-17 92.0 69 68.1
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 1.9e-17 92.0 69 68.1
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 2.4e-17 91.7 65 70.8
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 2.4e-17 91.7 65 70.8
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 3.2e-17 91.3 65 69.2
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 3.2e-17 91.3 65 69.2
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 3.2e-17 91.3 65 69.2
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 3.2e-17 91.3 65 69.2
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 3.2e-17 91.3 65 69.2
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 4.2e-17 90.9 65 67.7
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 5.4e-17 90.5 66 68.2
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 7.1e-17 90.1 66 66.7
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 7.1e-17 90.1 74 64.9
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 1.2e-16 89.4 65 69.2
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 1.2e-16 89.4 65 67.7
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 1.2e-16 89.4 65 67.7
Sabra19G0025900 Salix brachista HOM05D003159 ORTHO05D003780 1.2e-16 89.4 65 67.7
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.2e-16 89.4 65 67.7
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 1.6e-16 89.0 66 66.7
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 1.6e-16 89.0 66 66.7
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.6e-16 89.0 65 69.2
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.6e-16 89.0 65 69.2
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.6e-16 89.0 65 69.2
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 1.6e-16 89.0 65 67.7
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 1.6e-16 89.0 65 66.2
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 1.6e-16 89.0 65 66.2
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 2.1e-16 88.6 65 67.7
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 2.1e-16 88.6 65 67.7
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 2.1e-16 88.6 66 66.7
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 2.1e-16 88.6 65 67.7
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 2.7e-16 88.2 65 69.2
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 2.7e-16 88.2 65 66.2
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 3.5e-16 87.8 65 66.2
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 3.5e-16 87.8 65 67.7
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 3.5e-16 87.8 57 77.2
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 4.6e-16 87.4 65 69.2
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 4.6e-16 87.4 66 65.2
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 6.0e-16 87.0 65 66.2
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 7.8e-16 86.7 66 66.7
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 7.8e-16 86.7 66 66.7
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 1.0e-15 86.3 65 63.1
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 1.0e-15 86.3 65 63.1
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 1.0e-15 86.3 65 63.1
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 1.0e-15 86.3 65 63.1
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.0e-15 86.3 65 66.2
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 1.0e-15 86.3 65 63.1
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 1.3e-15 85.9 65 66.2
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 1.3e-15 85.9 65 66.2
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 1.3e-15 85.9 67 68.7
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 1.7e-15 85.5 65 67.7
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 1.7e-15 85.5 65 63.1
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 1.7e-15 85.5 65 63.1
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 1.7e-15 85.5 65 63.1
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 1.7e-15 85.5 65 63.1
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 1.7e-15 85.5 65 63.1
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 1.7e-15 85.5 65 63.1
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 1.7e-15 85.5 66 63.6
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 1.7e-15 85.5 66 63.6
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 3.0e-15 84.7 63 69.8
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 3.0e-15 84.7 65 66.2
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.9e-15 84.3 65 64.6
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 3.9e-15 84.3 66 62.1
Gorai.007G279200 Gossypium raimondii HOM05D003159 ORTHO05D003780 3.9e-15 84.3 65 64.6
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 3.9e-15 84.3 65 66.2
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 5.1e-15 84.0 65 61.5
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 5.1e-15 84.0 57 73.7
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 6.6e-15 83.6 66 66.7
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 1.9e-14 82.0 65 63.1
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.9e-14 82.0 65 63.1
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 4.3e-14 80.9 51 80.4
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.6e-14 80.5 65 63.1
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 5.6e-14 80.5 67 62.7
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 7.3e-14 80.1 61 65.6
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 9.6e-14 79.7 65 60.0
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 1.6e-13 79.0 61 63.9
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 2.1e-13 78.6 61 63.9
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 8.1e-13 76.6 111 44.1
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 1.1e-12 76.3 66 59.1
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 1.8e-12 75.5 61 63.9
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.8e-12 75.5 63 60.3
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 2.4e-12 75.1 64 62.5
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 3.1e-12 74.7 61 60.7
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 4.0e-12 74.3 65 61.5
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 5.3e-12 73.9 64 57.8
BcaC04g20281 Brassica carinata HOM05D003159 ORTHO05D003780 6.9e-12 73.6 61 57.4
C09p45540 Brassica napus HOM05D003159 ORTHO05D003780 6.9e-12 73.6 61 57.4
BolC9t57426H Brassica oleracea HOM05D003159 ORTHO05D003780 6.9e-12 73.6 61 57.4
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 6.9e-12 73.6 65 60.0
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 9.0e-12 73.2 56 67.9
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 9.9e-11 69.7 67 53.7
BcaB02g09259 Brassica carinata HOM05D003159 ORTHO05D003780 1.3e-10 69.3 57 57.9
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.3e-10 69.3 67 50.7
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 2.2e-10 68.6 64 56.2
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 2.9e-10 68.2 63 57.1
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 2.9e-10 68.2 65 53.8
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 3.8e-10 67.8 67 52.2
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 4.9e-10 67.4 64 56.2
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 1.1e-09 66.2 47 68.1
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.4e-09 65.9 55 67.3
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 1.6e-08 62.4 67 47.8
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 3.5e-08 61.2 63 49.2
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 4.6e-08 60.8 68 44.1
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 6.0e-08 60.5 38 81.6
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 6.0e-08 60.5 64 51.6
FAN02G2337 Fragaria x ananassa HOM05D003159 ORTHO05D003780 7.9e-08 60.1 62 53.2
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 7.9e-08 60.1 67 47.8
TAR406G0002 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.8e-07 58.9 65 52.3
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 2.3e-07 58.5 63 47.6
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 3.0e-07 58.2 63 46.0
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 3.0e-07 58.2 38 78.9
FAN05G1365 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.1e-06 56.2 62 51.6
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 1.5e-06 55.8 38 76.3
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 3.3e-06 54.7 37 75.7
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 3.3e-06 54.7 36 77.8


User provided reference genes

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